ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basde09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK106188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 319 5e-84
2dbj|AK104453.1| Oryza sativa (japonica cultivar-group) cDNA clon... 319 5e-84
3dbj|AK099185.1| Oryza sativa (japonica cultivar-group) cDNA clon... 319 5e-84
4dbj|AK060020.1| Oryza sativa (japonica cultivar-group) cDNA clon... 319 5e-84
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 196 5e-47
6dbj|AP006839.2| Oryza sativa (japonica cultivar-group) genomic D... 196 5e-47
7ref|XM_477429.1| Oryza sativa (japonica cultivar-group), mRNA 60 8e-06
8emb|AJ620335.1| Oryza sativa (indica cultivar-group) mRNA for E3... 60 8e-06
9dbj|AK067254.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 8e-06
10emb|AJ867287.1| Oryza sativa (indica cultivar-group) mRNA for ub... 60 8e-06
11gb|AY105141.1| Zea mays PCO120313 mRNA sequence 52 0.002
12ref|NM_197199.1| Oryza sativa (japonica cultivar-group) unknown ... 46 0.12
13gb|AY639952.1| Avicennia marina putative protein (Am900550) mRNA... 46 0.12
14gb|AC138553.3| Ornithorhynchus anatinus clone OA_Bb-524H4, compl... 44 0.47
15gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 42 1.8
16gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 gen... 42 1.8
17dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
18emb|AL954687.17| Zebrafish DNA sequence from clone CH211-202B2 i... 42 1.8
19gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
20gb|BT013133.1| Lycopersicon esculentum clone 114426R, mRNA sequence 40 7.3
21emb|AL732327.6| Human DNA sequence from clone RP11-387P24 on chr... 40 7.3
22ref|XM_967583.1| PREDICTED: Tribolium castaneum similar to CG136... 40 7.3
23dbj|AK171019.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 7.3
24emb|AJ621377.1| Tetraodon nigroviridis partial Penelope-like ele... 40 7.3
25dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
26gb|AF532115.1| Mus musculus strain 129/SvJ BAC clone citb553n23 ... 40 7.3
27gb|AF532112.1| Mus musculus strain 129/SvJ BAC clone citb20h22 f... 40 7.3
28gb|AC007386.3| Homo sapiens BAC clone RP11-359K10 from 2, comple... 40 7.3
29gb|AC001231.3| Homo sapiens chromosome 17, clone CTB-44J6, compl... 40 7.3
30gb|AY147930.1| Expression vector pFerX8, complete sequence 40 7.3
31gb|AC104770.10| Homo sapiens chromosome 17, clone RP11-960B9, co... 40 7.3
32dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
33dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
34gb|AC005960.1|AC005960 Mus musculus chromosome 17 BAC citb20h22 ... 40 7.3
35emb|AL844533.11| Mouse DNA sequence from clone RP23-299K8 on chr... 40 7.3
36gb|AC170746.3| Loxodonta africana clone VMRC15-355K9, complete s... 40 7.3
37gb|AE017226.1| Treponema denticola ATCC 35405, complete genome 40 7.3
38emb|CR956641.9| Mouse DNA sequence from clone RP23-77N9 on chrom... 40 7.3 
>dbj|AK106188.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-D10, full
           insert sequence
          Length = 1173

 Score =  319 bits (161), Expect = 5e-84
 Identities = 283/323 (87%), Gaps = 3/323 (0%)
 Strand = Plus / Plus

                                                                       
Query: 209 tgtccctcaggggctccctcaaggccctcgaagccgatatccaccacgccaacaccctgg 268
           |||||||||||||||| |||||||| || ||||| ||||||||||| |||||||||||||
Sbjct: 217 tgtccctcaggggctctctcaaggcgcttgaagctgatatccaccatgccaacaccctgg 276

                                                                       
Query: 269 cgcatgctatccacagggcctatggcggcacctgcgtgcagatgaggctgtcctacagct 328
           |||||||||| |||||||||||||| ||  |||| ||||||||||||||||| |||||||
Sbjct: 277 cgcatgctatacacagggcctatgggggtgcctgtgtgcagatgaggctgtcttacagct 336

                                                                       
Query: 329 ccatggctccaatcatcctcaaccttatccagtggatggactgcagctgctccctctcct 388
           ||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || |
Sbjct: 337 ccatggctccaatcatccttaacctcatccagtggatggattgcagctgctccctttcat 396

                                                                       
Query: 389 acaccctccccagctacctgggcctcctggaggttcttgtctacaaggtttatgttgatg 448
           | |||||||| || ||||| || ||||| ||||||||||| |||||||| ||||||||||
Sbjct: 397 ataccctccctagttacctaggtctccttgaggttcttgtgtacaaggtatatgttgatg 456

                                                                       
Query: 449 gggatgcatccatatccac---catagaaaggcgagcgagcctcaaagaattctacgcca 505
            |||||| || ||||||||   ||| |||||| |||| |||||||| |||||||| ||  
Sbjct: 457 aggatgcctctatatccaccaacattgaaaggagagcaagcctcaaggaattctatgctg 516

                                  
Query: 506 taatatacccctacttgcaacaa 528
           ||||||| || | ||||||||||
Sbjct: 517 taatatatccattcttgcaacaa 539
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>dbj|AK104453.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H10, full
           insert sequence
          Length = 1290

 Score =  319 bits (161), Expect = 5e-84
 Identities = 283/323 (87%), Gaps = 3/323 (0%)
 Strand = Plus / Plus

                                                                       
Query: 209 tgtccctcaggggctccctcaaggccctcgaagccgatatccaccacgccaacaccctgg 268
           |||||||||||||||| |||||||| || ||||| ||||||||||| |||||||||||||
Sbjct: 217 tgtccctcaggggctctctcaaggcgcttgaagctgatatccaccatgccaacaccctgg 276

                                                                       
Query: 269 cgcatgctatccacagggcctatggcggcacctgcgtgcagatgaggctgtcctacagct 328
           |||||||||| |||||||||||||| ||  |||| ||||||||||||||||| |||||||
Sbjct: 277 cgcatgctatacacagggcctatgggggtgcctgtgtgcagatgaggctgtcttacagct 336

                                                                       
Query: 329 ccatggctccaatcatcctcaaccttatccagtggatggactgcagctgctccctctcct 388
           ||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || |
Sbjct: 337 ccatggctccaatcatccttaacctcatccagtggatggattgcagctgctccctttcat 396

                                                                       
Query: 389 acaccctccccagctacctgggcctcctggaggttcttgtctacaaggtttatgttgatg 448
           | |||||||| || ||||| || ||||| ||||||||||| |||||||| ||||||||||
Sbjct: 397 ataccctccctagttacctaggtctccttgaggttcttgtgtacaaggtatatgttgatg 456

                                                                       
Query: 449 gggatgcatccatatccac---catagaaaggcgagcgagcctcaaagaattctacgcca 505
            |||||| || ||||||||   ||| |||||| |||| |||||||| |||||||| ||  
Sbjct: 457 aggatgcctctatatccaccaacattgaaaggagagcaagcctcaaggaattctatgctg 516

                                  
Query: 506 taatatacccctacttgcaacaa 528
           ||||||| || | ||||||||||
Sbjct: 517 taatatatccattcttgcaacaa 539
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>dbj|AK099185.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105K15, full
           insert sequence
          Length = 1291

 Score =  319 bits (161), Expect = 5e-84
 Identities = 283/323 (87%), Gaps = 3/323 (0%)
 Strand = Plus / Plus

                                                                       
Query: 209 tgtccctcaggggctccctcaaggccctcgaagccgatatccaccacgccaacaccctgg 268
           |||||||||||||||| |||||||| || ||||| ||||||||||| |||||||||||||
Sbjct: 218 tgtccctcaggggctctctcaaggcgcttgaagctgatatccaccatgccaacaccctgg 277

                                                                       
Query: 269 cgcatgctatccacagggcctatggcggcacctgcgtgcagatgaggctgtcctacagct 328
           |||||||||| |||||||||||||| ||  |||| ||||||||||||||||| |||||||
Sbjct: 278 cgcatgctatacacagggcctatgggggtgcctgtgtgcagatgaggctgtcttacagct 337

                                                                       
Query: 329 ccatggctccaatcatcctcaaccttatccagtggatggactgcagctgctccctctcct 388
           ||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || |
Sbjct: 338 ccatggctccaatcatccttaacctcatccagtggatggattgcagctgctccctttcat 397

                                                                       
Query: 389 acaccctccccagctacctgggcctcctggaggttcttgtctacaaggtttatgttgatg 448
           | |||||||| || ||||| || ||||| ||||||||||| |||||||| ||||||||||
Sbjct: 398 ataccctccctagttacctaggtctccttgaggttcttgtgtacaaggtatatgttgatg 457

                                                                       
Query: 449 gggatgcatccatatccac---catagaaaggcgagcgagcctcaaagaattctacgcca 505
            |||||| || ||||||||   ||| |||||| |||| |||||||| |||||||| ||  
Sbjct: 458 aggatgcctctatatccaccaacattgaaaggagagcaagcctcaaggaattctatgctg 517

                                  
Query: 506 taatatacccctacttgcaacaa 528
           ||||||| || | ||||||||||
Sbjct: 518 taatatatccattcttgcaacaa 540
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>dbj|AK060020.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-G11, full
           insert sequence
          Length = 1296

 Score =  319 bits (161), Expect = 5e-84
 Identities = 283/323 (87%), Gaps = 3/323 (0%)
 Strand = Plus / Plus

                                                                       
Query: 209 tgtccctcaggggctccctcaaggccctcgaagccgatatccaccacgccaacaccctgg 268
           |||||||||||||||| |||||||| || ||||| ||||||||||| |||||||||||||
Sbjct: 217 tgtccctcaggggctctctcaaggcgcttgaagctgatatccaccatgccaacaccctgg 276

                                                                       
Query: 269 cgcatgctatccacagggcctatggcggcacctgcgtgcagatgaggctgtcctacagct 328
           |||||||||| |||||||||||||| ||  |||| ||||||||||||||||| |||||||
Sbjct: 277 cgcatgctatacacagggcctatgggggtgcctgtgtgcagatgaggctgtcttacagct 336

                                                                       
Query: 329 ccatggctccaatcatcctcaaccttatccagtggatggactgcagctgctccctctcct 388
           ||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || |
Sbjct: 337 ccatggctccaatcatccttaacctcatccagtggatggattgcagctgctccctttcat 396

                                                                       
Query: 389 acaccctccccagctacctgggcctcctggaggttcttgtctacaaggtttatgttgatg 448
           | |||||||| || ||||| || ||||| ||||||||||| |||||||| ||||||||||
Sbjct: 397 ataccctccctagttacctaggtctccttgaggttcttgtgtacaaggtatatgttgatg 456

                                                                       
Query: 449 gggatgcatccatatccac---catagaaaggcgagcgagcctcaaagaattctacgcca 505
            |||||| || ||||||||   ||| |||||| |||| |||||||| |||||||| ||  
Sbjct: 457 aggatgcctctatatccaccaacattgaaaggagagcaagcctcaaggaattctatgctg 516

                                  
Query: 506 taatatacccctacttgcaacaa 528
           ||||||| || | ||||||||||
Sbjct: 517 taatatatccattcttgcaacaa 539
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  196 bits (99), Expect = 5e-47
 Identities = 153/171 (89%)
 Strand = Plus / Plus

                                                                            
Query: 267      ggcgcatgctatccacagggcctatggcggcacctgcgtgcagatgaggctgtcctacag 326
                |||||||||||| |||||||||||||| ||  |||| ||||||||||||||||| |||||
Sbjct: 39422812 ggcgcatgctatacacagggcctatgggggtgcctgtgtgcagatgaggctgtcttacag 39422871

                                                                            
Query: 327      ctccatggctccaatcatcctcaaccttatccagtggatggactgcagctgctccctctc 386
                ||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||
Sbjct: 39422872 ctccatggctccaatcatccttaacctcatccagtggatggattgcagctgctccctttc 39422931

                                                                   
Query: 387      ctacaccctccccagctacctgggcctcctggaggttcttgtctacaaggt 437
                 || |||||||| || ||||| || ||||| ||||||||||| ||||||||
Sbjct: 39422932 atataccctccctagttacctaggtctccttgaggttcttgtgtacaaggt 39422982



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                           
Query: 209      tgtccctcaggggctccctcaaggccctcgaagccgatatccaccacgccaacaccctg 267
                |||||||||||||||| |||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 39422544 tgtccctcaggggctctctcaaggcgcttgaagctgatatccaccatgccaacaccctg 39422602
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>dbj|AP006839.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             fosmid clone:OSJNOa108M02
          Length = 38208

 Score =  196 bits (99), Expect = 5e-47
 Identities = 153/171 (89%)
 Strand = Plus / Plus

                                                                         
Query: 267   ggcgcatgctatccacagggcctatggcggcacctgcgtgcagatgaggctgtcctacag 326
             |||||||||||| |||||||||||||| ||  |||| ||||||||||||||||| |||||
Sbjct: 33336 ggcgcatgctatacacagggcctatgggggtgcctgtgtgcagatgaggctgtcttacag 33395

                                                                         
Query: 327   ctccatggctccaatcatcctcaaccttatccagtggatggactgcagctgctccctctc 386
             ||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||
Sbjct: 33396 ctccatggctccaatcatccttaacctcatccagtggatggattgcagctgctccctttc 33455

                                                                
Query: 387   ctacaccctccccagctacctgggcctcctggaggttcttgtctacaaggt 437
              || |||||||| || ||||| || ||||| ||||||||||| ||||||||
Sbjct: 33456 atataccctccctagttacctaggtctccttgaggttcttgtgtacaaggt 33506



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                        
Query: 209   tgtccctcaggggctccctcaaggccctcgaagccgatatccaccacgccaacaccctg 267
             |||||||||||||||| |||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 33068 tgtccctcaggggctctctcaaggcgcttgaagctgatatccaccatgccaacaccctg 33126
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>ref|XM_477429.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1107

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 87/106 (82%)
 Strand = Plus / Plus

                                                                       
Query: 224 ccctcaaggccctcgaagccgatatccaccacgccaacaccctggcgcatgctatccaca 283
           |||||||||| || || ||||| |||||||| ||||||||| ||||  |||||||||| |
Sbjct: 208 ccctcaaggcactggaggccgacatccaccatgccaacaccatggctaatgctatccaga 267

                                                         
Query: 284 gggcctatggcggcacctgcgtgcagatgaggctgtcctacagctc 329
           ||  |||||| ||  | || |||||||||||| |||| | ||||||
Sbjct: 268 ggaactatggtggagcatgtgtgcagatgaggttgtcgtgcagctc 313
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>emb|AJ620335.1| Oryza sativa (indica cultivar-group) mRNA for E3 ubiquitin ligase
           (ubl gene)
          Length = 762

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 87/106 (82%)
 Strand = Plus / Plus

                                                                       
Query: 224 ccctcaaggccctcgaagccgatatccaccacgccaacaccctggcgcatgctatccaca 283
           |||||||||| || || ||||| |||||||| ||||||||| ||||  |||||||||| |
Sbjct: 47  ccctcaaggcactggaggccgacatccaccatgccaacaccatggctaatgctatccaga 106

                                                         
Query: 284 gggcctatggcggcacctgcgtgcagatgaggctgtcctacagctc 329
           ||  |||||| ||  | || |||||||||||| |||| | ||||||
Sbjct: 107 ggaactatggtggagcatgtgtgcagatgaggttgtcgtgcagctc 152
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>dbj|AK067254.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099E09, full
           insert sequence
          Length = 1107

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 87/106 (82%)
 Strand = Plus / Plus

                                                                       
Query: 224 ccctcaaggccctcgaagccgatatccaccacgccaacaccctggcgcatgctatccaca 283
           |||||||||| || || ||||| |||||||| ||||||||| ||||  |||||||||| |
Sbjct: 208 ccctcaaggcactggaggccgacatccaccatgccaacaccatggctaatgctatccaga 267

                                                         
Query: 284 gggcctatggcggcacctgcgtgcagatgaggctgtcctacagctc 329
           ||  |||||| ||  | || |||||||||||| |||| | ||||||
Sbjct: 268 ggaactatggtggagcatgtgtgcagatgaggttgtcgtgcagctc 313
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>emb|AJ867287.1| Oryza sativa (indica cultivar-group) mRNA for ubiquitin ligase E3
           (ubl gene)
          Length = 762

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 87/106 (82%)
 Strand = Plus / Plus

                                                                       
Query: 224 ccctcaaggccctcgaagccgatatccaccacgccaacaccctggcgcatgctatccaca 283
           |||||||||| || || ||||| |||||||| ||||||||| ||||  |||||||||| |
Sbjct: 47  ccctcaaggcactggaggccgacatccaccatgccaacaccatggctaatgctatccaga 106

                                                         
Query: 284 gggcctatggcggcacctgcgtgcagatgaggctgtcctacagctc 329
           ||  |||||| ||  | || |||||||||||| |||| | ||||||
Sbjct: 107 ggaactatggtggagcatgtgtgcagatgaggttgtcgtgcagctc 152
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>gb|AY105141.1| Zea mays PCO120313 mRNA sequence
          Length = 1248

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 216 caggggctccctcaaggccctcgaagccgatatccaccacgccaacaccctggc 269
           ||||| |||| ||||||  |||||||| || ||||| |||||||||||||||||
Sbjct: 189 cagggactccatcaaggtgctcgaagctgacatccagcacgccaacaccctggc 242
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>ref|NM_197199.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0078O01.6), mRNA
          Length = 1073

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 235 ctcgaagccgatatccaccacgccaacaccctggc 269
           |||||||| || ||||| |||||||||||||||||
Sbjct: 34  ctcgaagctgacatccagcacgccaacaccctggc 68
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>gb|AY639952.1| Avicennia marina putative protein (Am900550) mRNA, complete cds
          Length = 964

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 235 ctcgaagccgatatccaccacgccaacaccctggc 269
           |||||||||||||| || || ||||||||||||||
Sbjct: 173 ctcgaagccgatattcaacatgccaacaccctggc 207
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>gb|AC138553.3| Ornithorhynchus anatinus clone OA_Bb-524H4, complete sequence
          Length = 144677

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 380    ccctctcctacaccctccccag 401
              ||||||||||||||||||||||
Sbjct: 100888 ccctctcctacaccctccccag 100867
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 398     ccagctacctgggcctcctgg 418
               |||||||||||||||||||||
Sbjct: 4821835 ccagctacctgggcctcctgg 4821855
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>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete
             sequence
          Length = 146664

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 235   ctcgaagccgatatccaccacgccaacaccctg 267
             |||||||| || ||||| |||||||||||||||
Sbjct: 65948 ctcgaagctgacatccagcacgccaacaccctg 65980
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 235      ctcgaagccgatatccaccacgccaacaccctg 267
                |||||||| || ||||| |||||||||||||||
Sbjct: 18562537 ctcgaagctgacatccagcacgccaacaccctg 18562569
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>emb|AL954687.17| Zebrafish DNA sequence from clone CH211-202B2 in linkage group 19,
              complete sequence
          Length = 191582

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 10     cacccacaccccaacagcaca 30
              |||||||||||||||||||||
Sbjct: 171758 cacccacaccccaacagcaca 171778
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 235      ctcgaagccgatatccaccacgccaacaccctg 267
                |||||||| || ||||| |||||||||||||||
Sbjct: 18572990 ctcgaagctgacatccagcacgccaacaccctg 18573022
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>gb|BT013133.1| Lycopersicon esculentum clone 114426R, mRNA sequence
          Length = 1327

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 430 tacaaggtttatgttgatgg 449
           ||||||||||||||||||||
Sbjct: 438 tacaaggtttatgttgatgg 457
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>emb|AL732327.6| Human DNA sequence from clone RP11-387P24 on chromosome X Contains
            part of the SH3KBP1 gene for SH3-domain kinase binding
            protein 1 (CIN85), complete sequence
          Length = 190325

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 364  atggactgcagctgctccct 383
            ||||||||||||||||||||
Sbjct: 6821 atggactgcagctgctccct 6840
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>ref|XM_967583.1| PREDICTED: Tribolium castaneum similar to CG13676-PA (LOC661426),
            mRNA
          Length = 2632

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 104  ctccccctcgcccaagtctc 123
            ||||||||||||||||||||
Sbjct: 2051 ctccccctcgcccaagtctc 2070
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>dbj|AK171019.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630218K08
            product:tripartite motif protein 26, full insert sequence
          Length = 4337

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 209  tgtccctcaggggctccctc 228
            ||||||||||||||||||||
Sbjct: 1978 tgtccctcaggggctccctc 1997
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>emb|AJ621377.1| Tetraodon nigroviridis partial Penelope-like element Poseidon_Tet
          Length = 2881

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 412  ctcctggaggttcttgtcta 431
            ||||||||||||||||||||
Sbjct: 1301 ctcctggaggttcttgtcta 1282
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 188      tgcttcacggcggccggccg 207
                ||||||||||||||||||||
Sbjct: 21072458 tgcttcacggcggccggccg 21072439
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>gb|AF532115.1| Mus musculus strain 129/SvJ BAC clone citb553n23 from the MHC region,
             complete sequence
          Length = 161729

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   tgtccctcaggggctccctc 228
             ||||||||||||||||||||
Sbjct: 93986 tgtccctcaggggctccctc 94005
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>gb|AF532112.1| Mus musculus strain 129/SvJ BAC clone citb20h22 from the MHC region,
             complete sequence
          Length = 172199

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   tgtccctcaggggctccctc 228
             ||||||||||||||||||||
Sbjct: 21294 tgtccctcaggggctccctc 21313
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>gb|AC007386.3| Homo sapiens BAC clone RP11-359K10 from 2, complete sequence
          Length = 176742

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 380    ccctctcctacaccctcccc 399
              ||||||||||||||||||||
Sbjct: 101110 ccctctcctacaccctcccc 101091
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>gb|AC001231.3| Homo sapiens chromosome 17, clone CTB-44J6, complete sequence
          Length = 134457

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  cggcggccggccgctgtccc 214
            ||||||||||||||||||||
Sbjct: 2149 cggcggccggccgctgtccc 2130
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>gb|AY147930.1| Expression vector pFerX8, complete sequence
          Length = 17787

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 216   caggggctccctcaaggccc 235
             ||||||||||||||||||||
Sbjct: 12847 caggggctccctcaaggccc 12866
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>gb|AC104770.10| Homo sapiens chromosome 17, clone RP11-960B9, complete sequence
          Length = 188574

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 195  cggcggccggccgctgtccc 214
            ||||||||||||||||||||
Sbjct: 4550 cggcggccggccgctgtccc 4569
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>dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0431A03
          Length = 149500

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    tgcttcacggcggccggccg 207
              ||||||||||||||||||||
Sbjct: 138633 tgcttcacggcggccggccg 138614
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>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0413H11
          Length = 147655

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   tgcttcacggcggccggccg 207
             ||||||||||||||||||||
Sbjct: 43668 tgcttcacggcggccggccg 43649
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>gb|AC005960.1|AC005960 Mus musculus chromosome 17 BAC citb20h22 from the MHC region, complete
             sequence
          Length = 158414

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   tgtccctcaggggctccctc 228
             ||||||||||||||||||||
Sbjct: 21277 tgtccctcaggggctccctc 21296
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>emb|AL844533.11| Mouse DNA sequence from clone RP23-299K8 on chromosome 2, complete
              sequence
          Length = 183820

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 381    cctctcctacaccctcccca 400
              ||||||||||||||||||||
Sbjct: 145408 cctctcctacaccctcccca 145389
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>gb|AC170746.3| Loxodonta africana clone VMRC15-355K9, complete sequence
          Length = 122744

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 512   acccctacttgcaacaaatt 531
             ||||||||||||||||||||
Sbjct: 53136 acccctacttgcaacaaatt 53117
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>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 436     gtttatgttgatggggatgc 455
               ||||||||||||||||||||
Sbjct: 2413022 gtttatgttgatggggatgc 2413003
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>emb|CR956641.9| Mouse DNA sequence from clone RP23-77N9 on chromosome 17, complete
              sequence
          Length = 202624

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    tgtccctcaggggctccctc 228
              ||||||||||||||||||||
Sbjct: 164325 tgtccctcaggggctccctc 164306


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,137,341
Number of Sequences: 3902068
Number of extensions: 4137341
Number of successful extensions: 85778
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 85585
Number of HSP's gapped (non-prelim): 195
length of query: 537
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 514
effective length of database: 17,143,297,704
effective search space: 8811655019856
effective search space used: 8811655019856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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