>GFRA4_HUMAN (Q9GZZ7) GDNF family receptor alpha-4 precursor (GFR-alpha-4)|
           (Persephin receptor)
          Length = 299

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
 Frame = -3

Query: 493 AAGPWSDW-------HRPPSCGTPPSTPFLS-LTRPCSSHP-RFPLPPSR 371
           AAGPW  W       HRPP+    P  P LS L  P +  P R P  P R
Sbjct: 136 AAGPWRGWGRGLSPAHRPPAAQASP--PGLSGLVHPSAQRPRRLPAGPGR 183

>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-2)
          Length = 1558

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 14/63 (22%)
 Frame = -3

Query: 463  PPSC---GTPPSTPFLSLTRPCSS----------HPRFPLPPSRF-AEAL*AKRRSRYPP 326
            PPSC    TPP+ P  S   PCS+           P  PLP  +   EAL        PP
Sbjct: 1041 PPSCPPTSTPPAGPSSSSQPPCSAAVSSGGSVPGAPSCPLPAVQIKEEALDEAEEPESPP 1100

Query: 325  CPP 317
             PP
Sbjct: 1101 PPP 1103

>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-related protein)
          Length = 1559

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 14/63 (22%)
 Frame = -3

Query: 463  PPSC---GTPPSTPFLSLTRPCSS----------HPRFPLPPSRF-AEAL*AKRRSRYPP 326
            PPSC    TPP+ P  S   PCS+           P  PLP  +   EAL        PP
Sbjct: 1041 PPSCPPTSTPPAGPSSSSQPPCSAAVSSGGNVPGAPSCPLPAVQIKEEALDEAEEPESPP 1100

Query: 325  CPP 317
             PP
Sbjct: 1101 PPP 1103

>PDLI4_HUMAN (P50479) PDZ and LIM domain protein 4 (LIM protein RIL)|
           (Reversion-induced LIM protein)
          Length = 330

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -3

Query: 466 RPPSCGTPPSTPFLSLTRPCSSHPRFPLPPSRFAEAL*AKRRSRYPPCPP 317
           RP   GT P     SL  P    PRFP+P +  +EA    + S     PP
Sbjct: 118 RPSGTGTGPEDGRPSLGSPYGQPPRFPVPHNGSSEATLPAQMSTLHVSPP 167

>MURC_CAMJR (Q5HU47) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 431

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 14/43 (32%), Positives = 28/43 (65%)
 Frame = +1

Query: 319 VGMEGTGCGALLRELQQIWTEVGESEGEKSKVLSEIERECLEV 447
           +G+ G G  AL R L++   ++  S+ ++SK+  E+E+E ++V
Sbjct: 7   IGIGGIGISALARFLKEKGFKISGSDLKESKITKELEKEGVKV 49

>DYR1B_MOUSE (Q9Z188) Dual specificity tyrosine-phosphorylation-regulated kinase|
           1B (EC 2.7.12.1)
          Length = 589

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
 Frame = -3

Query: 466 RPPSCGTPPSTPFLSLTR-----PCSSHPRFPLPPSRFAEAL*AKRRSRYPPCPP 317
           RPPS  +PP    + ++       CS  P  P P    A AL  +     PP PP
Sbjct: 511 RPPSPTSPPPPELMDVSLVGSPPDCSPPPPAPAPQHPAASALRTRMTGGRPPLPP 565

>MURC_CAMJE (Q9PNN7) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 432

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 14/43 (32%), Positives = 28/43 (65%)
 Frame = +1

Query: 319 VGMEGTGCGALLRELQQIWTEVGESEGEKSKVLSEIERECLEV 447
           +G+ G G  AL R L++   ++  S+ ++SK+  E+E+E ++V
Sbjct: 8   IGIGGIGISALARFLREKGFKISGSDLKESKITKELEKEGVKV 50

>U2AFM_MOUSE (Q62377) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa|
           subunit related-protein 2 (U2(RNU2) small nuclear RNA
           auxillary factor 1-like 2)
          Length = 462

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 108 DEEKKRKKQARQMPAAPWERDQRKKRSGAEGAR 10
           +E +KRK++  +   A WE  QRK+R   E  R
Sbjct: 98  EEARKRKEELERKLKAEWEEQQRKEREEEEQKR 130

>JHD1A_XENTR (Q5U263) JmjC domain-containing histone demethylation protein 1A|
           (EC 1.14.11.-) (F-box/LRR-repeat protein 11) (F-box and
           leucine-rich repeat protein 11)
          Length = 1146

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 19/44 (43%), Positives = 21/44 (47%)
 Frame = -3

Query: 466 RPPSCGTPPSTPFLSLTRPCSSHPRFPLPPSRFAEAL*AKRRSR 335
           RPP   +PPS P L L    SS P  P PPS   +   A R  R
Sbjct: 735 RPPLGQSPPSPPLLLLPPSPSSAP--PTPPSAQTQVPLASREER 776

>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein|
          Length = 346

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 463 PPSCGTPPSTPFLSLTRPCSSHPRFPLPP 377
           PP   +PPSTP    T P +  P  P+PP
Sbjct: 118 PPPIVSPPSTPKPPKTPPFTPKPPSPIPP 146

>TOR_CAEEL (Q95Q95) Target of rapamycin homolog (EC 2.7.11.1) (CeTOR) (Lethal|
            protein 363)
          Length = 2697

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 505  PQTGAAGPWSDWHRPPSCGTPPSTPFLSLTRPCSSHPRFPLPP 377
            P T A  P      PP+  +P   PF S+T P S    +P+PP
Sbjct: 1963 PVTRATSP-----PPPAQKSPQPAPFHSITEPLSVIIDYPVPP 2000

>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 20/64 (31%), Positives = 25/64 (39%)
 Frame = -3

Query: 505 PQTGAAGPWSDWHRPPSCGTPPSTPFLSLTRPCSSHPRFPLPPSRFAEAL*AKRRSRYPP 326
           P T +  P    H PP     P TP  +  +P  S P F  PP R   +     R   PP
Sbjct: 533 PPTFSPPPPRQIHSPPPPHWQPRTPTPTYGQP-PSPPTFSAPPPRQIHSPPPPHRQPRPP 591

Query: 325 CPPW 314
            P +
Sbjct: 592 TPTY 595

>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
          Length = 1386

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 466 RPPSCGTPPST--PFLSLTRPCSSHPRFPLPPS 374
           +PP    PPS+  P+L   +P  S P+ P PPS
Sbjct: 170 QPPPSYYPPSSAQPYLPPAQPSPSKPQLPPPPS 202

>BWR1B_HUMAN (Q8N1D0) Beckwith-Wiedemann syndrome chromosome region 1 candidate|
           protein B (p27-Beckwith-Wiedemann region 1 B)
           (p27-BWR1B) (Organic cation transporter-like protein
           2-antisense) (Solute carrier family 22 member 18
           antisense) (Solute carrier
          Length = 253

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +2

Query: 437 AWRCTAGRWTM-PIGPGSSCTSLWP 508
           A RC  G W   P GP  S  S+WP
Sbjct: 103 AMRCAEGAWWFSPDGPAGSAASIWP 127

>YDFB_SCHPO (Q10483) Hypothetical protein C17C9.11c in chromosome I|
          Length = 240

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +1

Query: 346 ALLRELQQIWTEVGESEGEKSKVLSEIERE 435
           A LR+LQ+I  +  E   ++ K+L+EIER+
Sbjct: 96  ARLRDLQKIRQQKAEDAEQRKKILAEIERD 125


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,565,487
Number of Sequences: 219361
Number of extensions: 1078785
Number of successful extensions: 4298
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4264
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)