ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdd23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF509748.1| Hordeum vulgare subsp. vulgare Morex barley stem ... 70 6e-09
2gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR c... 66 9e-08
3gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, comple... 62 1e-06
4emb|CR626934.1| Triticum aestivum 62 1e-06
5emb|CR626926.1| Aegilops tauschii 62 1e-06
6gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 ge... 62 1e-06
7gb|AY534122.1|SEG_AY534122S1 Aegilops tauschii transposon XJ, co... 60 6e-06
8gb|AY951948.1| Triticum monococcum CRT/DRE binding factor 14 (CB... 54 4e-04
9gb|AF488415.1| Triticum monococcum chromosome 7Am BAC 5K14 compl... 50 0.005
10emb|X83767.1|PSOEP75MR P.sativum mRNA for chloroplastic outer en... 50 0.005
11gb|AY622792.2| Aegilops searsii cultivar TA 1837 puroindoline a ... 50 0.005
12gb|L36858.1|PEAIAP75A Pisum sativum outer membrane protein (IAP7... 50 0.005
13emb|CR626890.8| Zebrafish DNA sequence from clone DKEY-83J7 in l... 48 0.022
14emb|BX324206.6| Zebrafish DNA sequence from clone CH211-66O10 in... 48 0.022
15gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complet... 46 0.086
16gb|AF325197.1|AF325197 Triticum aestivum LRK33 (Lrk33) and TAK33... 46 0.086
17gb|AY622793.2| Aegilops searsii cultivar TA 2355 puroindoline a ... 46 0.086
18gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 46 0.086
19gb|AC084586.1|CBRG41E12 Caenorhabditis briggsae cosmid G41E12, c... 44 0.34
20gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence 42 1.3
21gb|AC112676.8| Mus musculus chromosome 9, clone RP23-174F7, comp... 42 1.3
22gb|AC110241.17| Mus musculus chromosome 16, clone RP23-129F22, c... 42 1.3
23emb|AL589745.8| Human DNA sequence from clone RP11-478K15 on chr... 42 1.3
24dbj|AB100035.1| Triticum aestivum TaGlu1a mRNA for beta-glucosid... 42 1.3
25gb|AC093479.13| Mus musculus chromosome 16, clone RP23-61K2, com... 42 1.3
26gb|AC008541.6| Homo sapiens chromosome 5 clone CTC-498M5, comple... 42 1.3
27gb|AC106767.2| Homo sapiens chromosome 5 clone RP11-269M17, comp... 42 1.3
28gb|AC151906.3| Mus musculus BAC clone RP23-177B17 from chromosom... 42 1.3
29gb|AF153100.1|AF153100 Apis nuluensis haplotype 2 cytochrome oxi... 42 1.3
30gb|AF153099.1|AF153099 Apis nuluensis haplotype 1 cytochrome oxi... 42 1.3
31dbj|AB191303.1| Sus scrofa COL5A1 mRNA for procollagen alpha 1(V... 42 1.3
32gb|AC084598.1|CBRG42J05 Caenorhabditis briggsae cosmid G42J05, c... 42 1.3
33ref|NM_001014971.1| Sus scrofa procollagen alpha 1(V) (COL5A1), ... 42 1.3
34gb|AC145691.5| Mus musculus chromosome 1, clone RP24-278B15, com... 42 1.3
35dbj|AB097497.1| Sus scrofa COL5A1 mRNA for collagen type 5 alpha... 42 1.3
36gb|AC165413.16| Mus musculus chromosome 1, clone RP23-242C11, co... 42 1.3
37gb|AY803294.1| Human adenovirus type 14 strain de Wit, complete ... 40 5.3
38gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 5.3
39gb|AF067614.1| Caenorhabditis elegans cosmid T03A1, complete seq... 40 5.3
40gb|AC102686.7| Mus musculus chromosome 1, clone RP24-467J24, com... 40 5.3
41ref|XM_584390.1| PREDICTED: Bos taurus similar to Olfactory rece... 40 5.3
42gb|AE006382.1| Lactococcus lactis subsp. lactis IL1403 section 1... 40 5.3
43gb|AY459535.1| Lactobacillus johnsonii prophage Lj965, complete ... 40 5.3
44gb|AC138130.9| Medicago truncatula clone mth2-31d24, complete se... 40 5.3
45emb|AL359074.12| Human DNA sequence from clone RP11-137L10 on ch... 40 5.3
46emb|AL353671.6| Human DNA sequence from clone RP11-205M20 on chr... 40 5.3
47emb|AJ000883.1|LLJ000883 Lactococcus lactis lactis purDEK operon 40 5.3
48emb|AL607083.17| Mouse DNA sequence from clone RP23-206E3 on chr... 40 5.3
49gb|AC109442.3| Homo sapiens chromosome 5 clone CTC-345B2, comple... 40 5.3
50gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 5.3
51gb|AC073389.10| Homo sapiens chromosome 10 clone RP11-464F9, com... 40 5.3
52gb|AC006834.3| Caenorhabditis elegans cosmid ZK973, complete seq... 40 5.3
53gb|AC023932.11| Homo sapiens chromosome 18, clone RP11-510D21, c... 40 5.3
54gb|AC008650.8| Homo sapiens chromosome 5 clone CTB-186M2, comple... 40 5.3
55gb|AC020918.6| Homo sapiens chromosome 5 clone CTD-2020C3, compl... 40 5.3
56gb|AC018756.5| Homo sapiens chromosome 5 clone CTC-534K6, comple... 40 5.3
57gb|AC158401.5| Mus musculus chromosome 7, clone RP23-84N6, compl... 40 5.3
58gb|AC016608.5|AC016608 Homo sapiens chromosome 5 clone CTD-2170F... 40 5.3
59gb|AC004826.3|AC004826 Homo sapiens PAC clone RP1-309D19 from 5,... 40 5.3
60gb|AC074090.7| Homo sapiens BAC clone RP11-132H23 from 2, comple... 40 5.3
61gb|AC113382.2| Homo sapiens chromosome 5 clone RP11-325L7, compl... 40 5.3
62gb|AC083810.16| Homo sapiens 12 BAC RP11-809N1 (Roswell Park Can... 40 5.3
63gb|AC073167.12| Homo sapiens chromosome 15, clone RP11-317G6, co... 40 5.3
64gb|AC079834.8| Homo sapiens BAC clone CTD-2308L22 from 2, comple... 40 5.3
65emb|BX648087.1|HSM808233 Homo sapiens mRNA; cDNA DKFZp686G02226 ... 40 5.3
66dbj|AB070505.1| Human adenovirus type 14 genes for putative pVII... 40 5.3
67emb|AL391158.5|CNS06C83 Human chromosome 14 DNA sequence BAC R-5... 40 5.3
68gb|AC102529.18| Mus musculus chromosome 1, clone RP23-36G3, comp... 40 5.3
69gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome 40 5.3
70emb|BX897750.11| Zebrafish DNA sequence from clone DKEY-278N18, ... 40 5.3
71gb|AC152951.2| Mus musculus 10 BAC RP23-451J19 (Roswell Park Can... 40 5.3
72emb|AL445384.3|CNS07ED0 Human chromosome 14 DNA sequence BAC R-4... 40 5.3
73gb|L08232.1|ADRE3FIBES Adenovirus 11 E3 region encoding fiber pr... 40 5.3 
>gb|AF509748.1| Hordeum vulgare subsp. vulgare Morex barley stem rust resistance
            protein (Rpg1) gene, complete cds
          Length = 17974

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                               
Query: 128  tgaataattaataaaatggctgtatacatcgtcctgatgcagaggccgggg 178
            |||||||||||||||||||||| || |||| ||| ||||||||||||||||
Sbjct: 5282 tgaataattaataaaatggctgcatgcatcttccagatgcagaggccgggg 5232
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>gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR class RGA, HCBT-like
             putative defense response protein, and putative alliin
             lyase genes, complete cds; and unknown genes
          Length = 106618

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 58/65 (89%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                         
Query: 129   gaataattaataaaatggctgtatacatcgtcctgatgcagaggcc-ggggtcctcctcc 187
             |||||||||||||| ||| ||||| ||||| || |||||||||||| |||||| ||||||
Sbjct: 36869 gaataattaataaagtggttgtatgcatcgcccagatgcagaggccgggggtcatcctcc 36928

                  
Query: 188   ttttc 192
             |||||
Sbjct: 36929 ttttc 36933



 Score = 46.1 bits (23), Expect = 0.086
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                         
Query: 118   aaggtcttgttgaataattaataaaatggctgtatacatcgtcctgatgcagaggccggg 177
             ||||| ||| |||||||||||| |||||| | ||| ||||   || ||||| ||| ||||
Sbjct: 34576 aaggtgttggtgaataattaatgaaatggttatatgcatcactctaatgcaaaggtcggg 34517

                            
Query: 178   gtcctcctccttttc 192
             ||| |||||||||||
Sbjct: 34516 gtcatcctccttttc 34502
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>gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, complete sequence
          Length = 142018

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/51 (90%)
 Strand = Plus / Plus

                                                                
Query: 129   gaataattaataaaatggctgtatacatcgtcctgatgcagaggccggggt 179
             ||||||||||||| ||||||| || |||| ||| |||||||||||||||||
Sbjct: 74842 gaataattaataatatggctgcatgcatcctccagatgcagaggccggggt 74892
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>emb|CR626934.1| Triticum aestivum
          Length = 94398

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 56/63 (88%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                         
Query: 129   gaataattaataaaatggctgtatacatcgtcctgatgcagaggcc-ggggtcctcctcc 187
             |||||||||||||| |||| |||| ||||| || |||||||||||| |||||| ||||||
Sbjct: 12362 gaataattaataaagtggccgtatgcatcgcccagatgcagaggccgggggtcatcctcc 12421

                
Query: 188   ttt 190
             |||
Sbjct: 12422 ttt 12424



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 57/65 (87%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                         
Query: 129   gaataattaataaaatggctgtatacatcgtcctgatgcagaggcc-ggggtcctcctcc 187
             ||||||| ||||||||||| |||| ||||  || |||||||||||| |||||| ||||||
Sbjct: 45786 gaataatcaataaaatggccgtatgcatctcccagatgcagaggccgggggtcatcctcc 45845

                  
Query: 188   ttttc 192
             |||||
Sbjct: 45846 ttttc 45850
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>emb|CR626926.1| Aegilops tauschii
          Length = 94421

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 56/63 (88%), Gaps = 1/63 (1%)
 Strand = Plus / Plus

                                                                         
Query: 129   gaataattaataaaatggctgtatacatcgtcctgatgcagaggcc-ggggtcctcctcc 187
             |||||||||||||| |||| |||| ||||| || |||||||||||| |||||| ||||||
Sbjct: 10458 gaataattaataaagtggccgtatgcatcgcccagatgcagaggccgggggtcatcctcc 10517

                
Query: 188   ttt 190
             |||
Sbjct: 10518 ttt 10520
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>gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115G1 gene sequence
          Length = 215241

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                 
Query: 130    aataattaataaaatggctgtatacatcgtcctgatgcagaggccggggtc 180
              ||||||||||||| |||| |||| ||||| || ||||||||||||||||||
Sbjct: 200445 aataattaataaagtggccgtatgcatcgcccagatgcagaggccggggtc 200395
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>gb|AY534122.1|SEG_AY534122S1 Aegilops tauschii transposon XJ, complete sequence; putative Bowman
            Birk trypsin inhibitor gene, complete cds; Stowaway MITE,
            complete sequence; and insertion sequences xl_tt1a and
            xl_tt1b putative ripening related protein genes, complete
            cds
          Length = 26073

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 58/66 (87%), Gaps = 1/66 (1%)
 Strand = Plus / Minus

                                                                        
Query: 128  tgaataattaataaaatggctgtatacatcgtcctgatgcagaggcc-ggggtcctcctc 186
            |||||||||||| || |||||| || |||||||| ||||||||  || ||||||||||||
Sbjct: 9375 tgaataattaattaagtggctgcatgcatcgtccagatgcagaaaccgggggtcctcctc 9316

                  
Query: 187  cttttc 192
            ||||||
Sbjct: 9315 cttttc 9310
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>gb|AY951948.1| Triticum monococcum CRT/DRE binding factor 14 (CBF14) gene, complete
            cds
          Length = 5244

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                        
Query: 130  aataattaataaaatggctgtatacatcgtcctgatgcagaggccggggtcctcctcctt 189
            |||||| |||||| |||| |||| ||||  || |||||||||||||||||| |||| |||
Sbjct: 2139 aataatcaataaagtggccgtatgcatctcccagatgcagaggccggggtcatcctactt 2080

               
Query: 190  ttc 192
            |||
Sbjct: 2079 ttc 2077
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>gb|AF488415.1| Triticum monococcum chromosome 7Am BAC 5K14 complete sequence
          Length = 168746

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 164   atgcagaggccggggtcctcctccttttc 192
             ||||||||||| |||||||||||||||||
Sbjct: 85043 atgcagaggccagggtcctcctccttttc 85015
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>emb|X83767.1|PSOEP75MR P.sativum mRNA for chloroplastic outer envelope membrane protein
            (OEP75)
          Length = 3318

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 240  atctttctccaaaaaggaaaaatactgca 268
            |||||||||||||| ||||||||||||||
Sbjct: 3001 atctttctccaaaacggaaaaatactgca 2973
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>gb|AY622792.2| Aegilops searsii cultivar TA 1837 puroindoline a (Pina-Ss1) gene,
           Pina-Ss1-a allele, complete cds
          Length = 1395

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 50/57 (87%), Gaps = 1/57 (1%)
 Strand = Plus / Plus

                                                                    
Query: 137 aataaaatggctgtatacatcgtcctgatgcagaggcc-ggggtcctcctccttttc 192
           |||| |||||| |||| ||||| || |||||||||||| |||||| |||||||||||
Sbjct: 506 aatacaatggccgtatgcatcgcccagatgcagaggccgggggtcatcctccttttc 562
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>gb|L36858.1|PEAIAP75A Pisum sativum outer membrane protein (IAP75) mRNA, complete cds
          Length = 2755

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 240  atctttctccaaaaaggaaaaatactgca 268
            |||||||||||||| ||||||||||||||
Sbjct: 2432 atctttctccaaaacggaaaaatactgca 2404
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>emb|CR626890.8| Zebrafish DNA sequence from clone DKEY-83J7 in linkage group 15,
            complete sequence
          Length = 211127

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 361  actgagaatagaataatagtagaa 384
            ||||||||||||||||||||||||
Sbjct: 7404 actgagaatagaataatagtagaa 7427
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>emb|BX324206.6| Zebrafish DNA sequence from clone CH211-66O10 in linkage group 15,
             complete sequence
          Length = 164638

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 361   actgagaatagaataatagtagaa 384
             ||||||||||||||||||||||||
Sbjct: 56302 actgagaatagaataatagtagaa 56325
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>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence
          Length = 114996

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 134   attaataaaatggctgtatacatcgtcctgatgcagaggccgg 176
             ||||||||| |||  |||| |||||| ||||||||||||||||
Sbjct: 59435 attaataaagtggtcgtatgcatcgtgctgatgcagaggccgg 59477
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>gb|AF325197.1|AF325197 Triticum aestivum LRK33 (Lrk33) and TAK33 (Tak33) genes, complete cds
          Length = 20754

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 144  tggctgtatacatcgtcctgatgcagaggccgggg 178
            |||| |||| |||||| ||||||||||||||||||
Sbjct: 3034 tggccgtatgcatcgttctgatgcagaggccgggg 3068
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>gb|AY622793.2| Aegilops searsii cultivar TA 2355 puroindoline a (Pina-Ss1) gene,
           Pina-Ss1-b allele, complete cds
          Length = 1396

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 42/47 (89%), Gaps = 1/47 (2%)
 Strand = Plus / Plus

                                                          
Query: 147 ctgtatacatcgtcctgatgcagaggcc-ggggtcctcctccttttc 192
           |||||| ||||| || |||||||||||| |||||| |||||||||||
Sbjct: 517 ctgtatgcatcgcccagatgcagaggccgggggtcatcctccttttc 563
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>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 239    tatctttctccaaaaaggaaaaa 261
              |||||||||||||||||||||||
Sbjct: 609263 tatctttctccaaaaaggaaaaa 609241
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>gb|AC084586.1|CBRG41E12 Caenorhabditis briggsae cosmid G41E12, complete sequence
          Length = 35317

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 95    aatttggaatatctgaaattct 116
             ||||||||||||||||||||||
Sbjct: 23160 aatttggaatatctgaaattct 23181
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>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence
          Length = 211664

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 130   aataattaataaaatggctgtatacatcgtcctgatgcaga 170
             |||||||||||||||| ||| || |||||||  ||||||||
Sbjct: 67352 aataattaataaaatgactgcatgcatcgtctggatgcaga 67392
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>gb|AC112676.8| Mus musculus chromosome 9, clone RP23-174F7, complete sequence
          Length = 230293

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 241   tctttctccaaaaaggaaaaa 261
             |||||||||||||||||||||
Sbjct: 15172 tctttctccaaaaaggaaaaa 15152
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>gb|AC110241.17| Mus musculus chromosome 16, clone RP23-129F22, complete sequence
          Length = 256720

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 125 tgttgaataattaataaaatg 145
           |||||||||||||||||||||
Sbjct: 50  tgttgaataattaataaaatg 70
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>emb|AL589745.8| Human DNA sequence from clone RP11-478K15 on chromosome 13 Contains
             parts of four novel genes, the 5' end of a novel gene and
             a CpG island, complete sequence
          Length = 170765

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 194   agaaaaatctgaaattcttaa 214
             |||||||||||||||||||||
Sbjct: 36592 agaaaaatctgaaattcttaa 36572
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>dbj|AB100035.1| Triticum aestivum TaGlu1a mRNA for beta-glucosidase, complete cds
          Length = 2355

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 150  tatacatcgtcctgatgcagaggccgggg 178
            |||||||| | ||||||||||||||||||
Sbjct: 2177 tatacatcattctgatgcagaggccgggg 2205
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>gb|AC093479.13| Mus musculus chromosome 16, clone RP23-61K2, complete sequence
          Length = 243771

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 125    tgttgaataattaataaaatg 145
              |||||||||||||||||||||
Sbjct: 174997 tgttgaataattaataaaatg 175017
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>gb|AC008541.6| Homo sapiens chromosome 5 clone CTC-498M5, complete sequence
          Length = 148043

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 245    tctccaaaaaggaaaaatact 265
              |||||||||||||||||||||
Sbjct: 101495 tctccaaaaaggaaaaatact 101515
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>gb|AC106767.2| Homo sapiens chromosome 5 clone RP11-269M17, complete sequence
          Length = 143792

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 245  tctccaaaaaggaaaaatact 265
            |||||||||||||||||||||
Sbjct: 2790 tctccaaaaaggaaaaatact 2810
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>gb|AC151906.3| Mus musculus BAC clone RP23-177B17 from chromosome 9, complete sequence
          Length = 215508

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 241   tctttctccaaaaaggaaaaa 261
             |||||||||||||||||||||
Sbjct: 27349 tctttctccaaaaaggaaaaa 27369
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>gb|AF153100.1|AF153100 Apis nuluensis haplotype 2 cytochrome oxidase subunit 1 (COI) gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 1041

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 131 ataattaataaaatggctgta 151
           |||||||||||||||||||||
Sbjct: 374 ataattaataaaatggctgta 354
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>gb|AF153099.1|AF153099 Apis nuluensis haplotype 1 cytochrome oxidase subunit 1 (COI) gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 1041

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 131 ataattaataaaatggctgta 151
           |||||||||||||||||||||
Sbjct: 374 ataattaataaaatggctgta 354
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>dbj|AB191303.1| Sus scrofa COL5A1 mRNA for procollagen alpha 1(V), complete cds
          Length = 5883

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 169  gaggccggggtcctcctcctt 189
            |||||||||||||||||||||
Sbjct: 1015 gaggccggggtcctcctcctt 995
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>gb|AC084598.1|CBRG42J05 Caenorhabditis briggsae cosmid G42J05, complete sequence
          Length = 40229

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 95    aatttggaatatctgaaattc 115
             |||||||||||||||||||||
Sbjct: 24431 aatttggaatatctgaaattc 24411
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>ref|NM_001014971.1| Sus scrofa procollagen alpha 1(V) (COL5A1), mRNA
          Length = 5883

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 169  gaggccggggtcctcctcctt 189
            |||||||||||||||||||||
Sbjct: 1015 gaggccggggtcctcctcctt 995
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>gb|AC145691.5| Mus musculus chromosome 1, clone RP24-278B15, complete sequence
          Length = 164151

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 96    atttggaatatctgaaattct 116
             |||||||||||||||||||||
Sbjct: 24752 atttggaatatctgaaattct 24732
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>dbj|AB097497.1| Sus scrofa COL5A1 mRNA for collagen type 5 alpha 1, partial cds
          Length = 1553

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 169  gaggccggggtcctcctcctt 189
            |||||||||||||||||||||
Sbjct: 1015 gaggccggggtcctcctcctt 995
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>gb|AC165413.16| Mus musculus chromosome 1, clone RP23-242C11, complete sequence
          Length = 186380

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 96     atttggaatatctgaaattct 116
              |||||||||||||||||||||
Sbjct: 180176 atttggaatatctgaaattct 180156
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>gb|AY803294.1| Human adenovirus type 14 strain de Wit, complete genome
          Length = 34764

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   tcgagaaaaatctgaaattc 210
             ||||||||||||||||||||
Sbjct: 29915 tcgagaaaaatctgaaattc 29934
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    ctgaaattctgaaggtcttg 126
              ||||||||||||||||||||
Sbjct: 918924 ctgaaattctgaaggtcttg 918905
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>gb|AF067614.1| Caenorhabditis elegans cosmid T03A1, complete sequence
          Length = 35318

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   atgtatctttctccaaaaag 255
             ||||||||||||||||||||
Sbjct: 20795 atgtatctttctccaaaaag 20814
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>gb|AC102686.7| Mus musculus chromosome 1, clone RP24-467J24, complete sequence
          Length = 156547

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    tctgaaattcttaacttaca 220
              ||||||||||||||||||||
Sbjct: 150611 tctgaaattcttaacttaca 150592
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>ref|XM_584390.1| PREDICTED: Bos taurus similar to Olfactory receptor 7A5 (Olfactory
           receptor TPCR92) (LOC507726), mRNA
          Length = 954

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 109 gaaattctgaaggtcttgtt 128
           ||||||||||||||||||||
Sbjct: 37  gaaattctgaaggtcttgtt 18
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>gb|AE006382.1| Lactococcus lactis subsp. lactis IL1403 section 144 of 218 of the
            complete genome
          Length = 10240

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 124  ttgttgaataattaataaaatggctgtataca 155
            |||||||||||| |||||||| |||| |||||
Sbjct: 4176 ttgttgaataataaataaaatagctgaataca 4145
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>gb|AY459535.1| Lactobacillus johnsonii prophage Lj965, complete genome
          Length = 40190

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 140  aaaatggctgtatacatcgt 159
            ||||||||||||||||||||
Sbjct: 6703 aaaatggctgtatacatcgt 6684
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>gb|AC138130.9| Medicago truncatula clone mth2-31d24, complete sequence
          Length = 146386

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   aattaataaaatggctgtat 152
             ||||||||||||||||||||
Sbjct: 83484 aattaataaaatggctgtat 83503
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>emb|AL359074.12| Human DNA sequence from clone RP11-137L10 on chromosome 10 Contains the
              5' end of the PPP3CB gene for protein phosphatase 3
              (formerly 2B) catalytic subunit beta isoform (calcineurin A
              beta), two novel genes (FLJ37318), the 3' end of a novel
              gene, a ribosomal protein S26 (RPS26) pseudogene and a CpG
              island, complete sequence
          Length = 152161

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 227    agatacttaatgtatctttc 246
              ||||||||||||||||||||
Sbjct: 105756 agatacttaatgtatctttc 105775
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>emb|AL353671.6| Human DNA sequence from clone RP11-205M20 on chromosome 9 Contains the 5'
              end of the gene for DEAD/H (Asp-Glu-Ala-Asp/His) box
              polypeptide (RIG-I), the gene for tumor protein p53-binding
              protein (TP53BPL), a novel gene, a DNA fragmentation
              factor, 40kDa, beta polypeptide (caspase-activated DNase)
              (DFFB) (CAD, CPAN, DFF40) pseudogene, a novel gene
              (FLJ25547), the  NDUFB6 gene for NADH dehydrogenase
              (ubiquinone) 1 beta subcomplex, 6, 17kDa (B17), and a CpG
              island, complete sequence
          Length = 155585

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    ataattaataaaatggctgt 150
              ||||||||||||||||||||
Sbjct: 148694 ataattaataaaatggctgt 148713
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>emb|AJ000883.1|LLJ000883 Lactococcus lactis lactis purDEK operon
          Length = 3573

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 124 ttgttgaataattaataaaatggctgtataca 155
           |||||||||||| |||||||| |||| |||||
Sbjct: 644 ttgttgaataataaataaaatagctgaataca 675
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>emb|AL607083.17| Mouse DNA sequence from clone RP23-206E3 on chromosome 11 Contains a
            novel gene, complete sequence
          Length = 189495

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 10   cccttctgcagcatcagttc 29
            ||||||||||||||||||||
Sbjct: 2755 cccttctgcagcatcagttc 2774
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>gb|AC109442.3| Homo sapiens chromosome 5 clone CTC-345B2, complete sequence
          Length = 71075

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  taacttacaaactcaagata 231
            ||||||||||||||||||||
Sbjct: 9486 taacttacaaactcaagata 9467
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 83      tgcgagttgaccaatttgga 102
               ||||||||||||||||||||
Sbjct: 3978280 tgcgagttgaccaatttgga 3978299
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>gb|AC073389.10| Homo sapiens chromosome 10 clone RP11-464F9, complete sequence
          Length = 190681

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 227    agatacttaatgtatctttc 246
              ||||||||||||||||||||
Sbjct: 115028 agatacttaatgtatctttc 115009
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>gb|AC006834.3| Caenorhabditis elegans cosmid ZK973, complete sequence
          Length = 66626

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   atgtatctttctccaaaaag 255
             ||||||||||||||||||||
Sbjct: 10177 atgtatctttctccaaaaag 10196
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>gb|AC023932.11| Homo sapiens chromosome 18, clone RP11-510D21, complete sequence
          Length = 166125

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    aagatacttaatgtatcttt 245
              ||||||||||||||||||||
Sbjct: 107163 aagatacttaatgtatcttt 107144



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 226    aagatacttaatgtatcttt 245
              ||||||||||||||||||||
Sbjct: 105145 aagatacttaatgtatcttt 105126
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>gb|AC008650.8| Homo sapiens chromosome 5 clone CTB-186M2, complete sequence
          Length = 139226

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 241    tctttctccaaaaaggaaaa 260
              ||||||||||||||||||||
Sbjct: 132089 tctttctccaaaaaggaaaa 132070
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>gb|AC020918.6| Homo sapiens chromosome 5 clone CTD-2020C3, complete sequence
          Length = 175425

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   tctttctccaaaaaggaaaa 260
             ||||||||||||||||||||
Sbjct: 86587 tctttctccaaaaaggaaaa 86606
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>gb|AC018756.5| Homo sapiens chromosome 5 clone CTC-534K6, complete sequence
          Length = 122005

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 241   tctttctccaaaaaggaaaa 260
             ||||||||||||||||||||
Sbjct: 54400 tctttctccaaaaaggaaaa 54419
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>gb|AC158401.5| Mus musculus chromosome 7, clone RP23-84N6, complete sequence
          Length = 247769

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 137    aataaaatggctgtatacat 156
              ||||||||||||||||||||
Sbjct: 174101 aataaaatggctgtatacat 174120
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>gb|AC016608.5|AC016608 Homo sapiens chromosome 5 clone CTD-2170F21, complete sequence
          Length = 113626

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   tctttctccaaaaaggaaaa 260
             ||||||||||||||||||||
Sbjct: 44153 tctttctccaaaaaggaaaa 44134
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>gb|AC004826.3|AC004826 Homo sapiens PAC clone RP1-309D19 from 5, complete sequence
          Length = 149172

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   taacttacaaactcaagata 231
             ||||||||||||||||||||
Sbjct: 68831 taacttacaaactcaagata 68812
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>gb|AC074090.7| Homo sapiens BAC clone RP11-132H23 from 2, complete sequence
          Length = 130369

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    tgtatgtagctgtggaggac 71
             ||||||||||||||||||||
Sbjct: 94370 tgtatgtagctgtggaggac 94351
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>gb|AC113382.2| Homo sapiens chromosome 5 clone RP11-325L7, complete sequence
          Length = 166870

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   taacttacaaactcaagata 231
             ||||||||||||||||||||
Sbjct: 26213 taacttacaaactcaagata 26232
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>gb|AC083810.16| Homo sapiens 12 BAC RP11-809N1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 95838

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 116   tgaaggtcttgttgaataattaat 139
             ||||||||||| ||||||||||||
Sbjct: 54670 tgaaggtcttgatgaataattaat 54647
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>gb|AC073167.12| Homo sapiens chromosome 15, clone RP11-317G6, complete sequence
          Length = 174654

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     aatttcccttctgcagcatc 24
             ||||||||||||||||||||
Sbjct: 91724 aatttcccttctgcagcatc 91705
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>gb|AC079834.8| Homo sapiens BAC clone CTD-2308L22 from 2, complete sequence
          Length = 108621

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   aatatctgaaattctgaagg 121
             ||||||||||||||||||||
Sbjct: 90255 aatatctgaaattctgaagg 90274
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>emb|BX648087.1|HSM808233 Homo sapiens mRNA; cDNA DKFZp686G02226 (from clone DKFZp686G02226)
          Length = 6266

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 241  tctttctccaaaaaggaaaa 260
            ||||||||||||||||||||
Sbjct: 1378 tctttctccaaaaaggaaaa 1397
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>dbj|AB070505.1| Human adenovirus type 14 genes for putative pVIII protein, E3 region
            proteins, fiber protein, complete and partial cds
          Length = 4654

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 191  tcgagaaaaatctgaaattc 210
            ||||||||||||||||||||
Sbjct: 3592 tcgagaaaaatctgaaattc 3611
to top
>emb|AL391158.5|CNS06C83 Human chromosome 14 DNA sequence BAC R-560O13 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 202792

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     ttgtatgtagctgtggagga 70
              ||||||||||||||||||||
Sbjct: 174002 ttgtatgtagctgtggagga 174021
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>gb|AC102529.18| Mus musculus chromosome 1, clone RP23-36G3, complete sequence
          Length = 210575

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   tctgaaattcttaacttaca 220
             ||||||||||||||||||||
Sbjct: 13089 tctgaaattcttaacttaca 13070
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>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome
          Length = 1992676

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    aaaatggctgtatacatcgt 159
              ||||||||||||||||||||
Sbjct: 334478 aaaatggctgtatacatcgt 334459
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>emb|BX897750.11| Zebrafish DNA sequence from clone DKEY-278N18, complete sequence
          Length = 182033

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 205  aaattcttaacttacaaact 224
            ||||||||||||||||||||
Sbjct: 2725 aaattcttaacttacaaact 2706
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>gb|AC152951.2| Mus musculus 10 BAC RP23-451J19 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 183431

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    aatttggaatatctgaaatt 114
             ||||||||||||||||||||
Sbjct: 56050 aatttggaatatctgaaatt 56031
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>emb|AL445384.3|CNS07ED0 Human chromosome 14 DNA sequence BAC R-460A13 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 160750

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 51     ttgtatgtagctgtggagga 70
              ||||||||||||||||||||
Sbjct: 151315 ttgtatgtagctgtggagga 151296
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>gb|L08232.1|ADRE3FIBES Adenovirus 11 E3 region encoding fiber protein gene, complete cds
          Length = 2481

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 191 tcgagaaaaatctgaaattc 210
           ||||||||||||||||||||
Sbjct: 222 tcgagaaaaatctgaaattc 241


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,872,381
Number of Sequences: 3902068
Number of extensions: 4872381
Number of successful extensions: 140190
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 139934
Number of HSP's gapped (non-prelim): 251
length of query: 395
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 373
effective length of database: 17,147,199,772
effective search space: 6395905514956
effective search space used: 6395905514956
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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