>gb|AY206371.1| Triticum aestivum photosystem II polypeptide mRNA, partial cds;
           nuclear gene for chloroplast product
          Length = 481

 Score =  276 bits (139), Expect = 3e-71
 Identities = 161/169 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccaatctacacgccagaggaatggtccgaatctggtgaccgctacgccggtggaacgac 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 155 cccaatctacacgccagaggaatggtctgaatctggtgaccgctacgccggcggaacgac 214

                                                                       
Query: 61  cgggcttcttatctgggccgtcaccctcgccggcctcctcggcggnggcgccctcctngt 120
           ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||
Sbjct: 215 cgggcttcttatctgggccgtcaccctcgccggcctcctcggcggcggcgtcctcctcgt 274

                                                            
Query: 121 ctacaataccagcgctctcgccggctaagaaagcatctacctgtaacac 169
           |||||| ||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 275 ctacaacaccagcgctctcgccggctaagagagcatctacgtgtaacac 323

>ref|XM_480562.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 616

 Score =  139 bits (70), Expect = 4e-30
 Identities = 128/148 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccaatctacacgccagaggaatggtccgaatctggtgaccgctacgccggtggaacgac 60
           |||||||||| |||| |||||||||||     | ||||||  |||||  |||||||| ||
Sbjct: 330 cccaatctactcgccggaggaatggtctcccaccggtgacacctacgttggtggaaccac 389

                                                                       
Query: 61  cgggcttcttatctgggccgtcaccctcgccggcctcctcggcggnggcgccctcctngt 120
           ||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||| ||
Sbjct: 390 cgggcttctgatctgggccgtgaccctcgccgggctcctcggcggcggcgccctcctcgt 449

                                       
Query: 121 ctacaataccagcgctctcgccggctaa 148
           |||||| |||||||| ||||||||||||
Sbjct: 450 ctacaacaccagcgccctcgccggctaa 477

>ref|XM_507163.1| PREDICTED Oryza sativa (japonica cultivar-group), P0556A11.19 mRNA
          Length = 711

 Score =  139 bits (70), Expect = 4e-30
 Identities = 128/148 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccaatctacacgccagaggaatggtccgaatctggtgaccgctacgccggtggaacgac 60
           |||||||||| |||| |||||||||||     | ||||||  |||||  |||||||| ||
Sbjct: 326 cccaatctactcgccggaggaatggtctcccaccggtgacacctacgttggtggaaccac 385

                                                                       
Query: 61  cgggcttcttatctgggccgtcaccctcgccggcctcctcggcggnggcgccctcctngt 120
           ||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||| ||
Sbjct: 386 cgggcttctgatctgggccgtgaccctcgccgggctcctcggcggcggcgccctcctcgt 445

                                       
Query: 121 ctacaataccagcgctctcgccggctaa 148
           |||||| |||||||| ||||||||||||
Sbjct: 446 ctacaacaccagcgccctcgccggctaa 473

>dbj|AK121083.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063I15, full
           insert sequence
          Length = 711

 Score =  139 bits (70), Expect = 4e-30
 Identities = 128/148 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccaatctacacgccagaggaatggtccgaatctggtgaccgctacgccggtggaacgac 60
           |||||||||| |||| |||||||||||     | ||||||  |||||  |||||||| ||
Sbjct: 326 cccaatctactcgccggaggaatggtctcccaccggtgacacctacgttggtggaaccac 385

                                                                       
Query: 61  cgggcttcttatctgggccgtcaccctcgccggcctcctcggcggnggcgccctcctngt 120
           ||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||| ||
Sbjct: 386 cgggcttctgatctgggccgtgaccctcgccgggctcctcggcggcggcgccctcctcgt 445

                                       
Query: 121 ctacaataccagcgctctcgccggctaa 148
           |||||| |||||||| ||||||||||||
Sbjct: 446 ctacaacaccagcgccctcgccggctaa 473

>dbj|AK105055.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F10, full
           insert sequence
          Length = 640

 Score =  139 bits (70), Expect = 4e-30
 Identities = 128/148 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccaatctacacgccagaggaatggtccgaatctggtgaccgctacgccggtggaacgac 60
           |||||||||| |||| |||||||||||     | ||||||  |||||  |||||||| ||
Sbjct: 354 cccaatctactcgccggaggaatggtctcccaccggtgacacctacgttggtggaaccac 413

                                                                       
Query: 61  cgggcttcttatctgggccgtcaccctcgccggcctcctcggcggnggcgccctcctngt 120
           ||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||| ||
Sbjct: 414 cgggcttctgatctgggccgtgaccctcgccgggctcctcggcggcggcgccctcctcgt 473

                                       
Query: 121 ctacaataccagcgctctcgccggctaa 148
           |||||| |||||||| ||||||||||||
Sbjct: 474 ctacaacaccagcgccctcgccggctaa 501

>gb|U86018.1|OSU86018 Oryza sativa photosystem II 10 kDa polypeptide mRNA, complete cds
          Length = 580

 Score =  139 bits (70), Expect = 4e-30
 Identities = 128/148 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccaatctacacgccagaggaatggtccgaatctggtgaccgctacgccggtggaacgac 60
           |||||||||| |||| |||||||||||     | ||||||  |||||  |||||||| ||
Sbjct: 269 cccaatctactcgccggaggaatggtctcccaccggtgacacctacgttggtggaaccac 328

                                                                       
Query: 61  cgggcttcttatctgggccgtcaccctcgccggcctcctcggcggnggcgccctcctngt 120
           ||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||| ||
Sbjct: 329 cgggcttctgatctgggccgtgaccctcgccgggctcctcggcggcggcgccctcctcgt 388

                                       
Query: 121 ctacaataccagcgctctcgccggctaa 148
           |||||| |||||||| ||||||||||||
Sbjct: 389 ctacaacaccagcgccctcgccggctaa 416

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  131 bits (66), Expect = 1e-27
 Identities = 88/96 (91%)
 Strand = Plus / Minus

                                                                           
Query: 53      ggaacgaccgggcttcttatctgggccgtcaccctcgccggcctcctcggcggnggcgcc 112
               ||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 5800452 ggaaccaccgggcttctgatctgggccgtgaccctcgccgggctcctcggcggcggcgcc 5800393

                                                   
Query: 113     ctcctngtctacaataccagcgctctcgccggctaa 148
               ||||| |||||||| |||||||| ||||||||||||
Sbjct: 5800392 ctcctcgtctacaacaccagcgccctcgccggctaa 5800357

>dbj|AP004589.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0556A11
          Length = 138096

 Score =  131 bits (66), Expect = 1e-27
 Identities = 88/96 (91%)
 Strand = Plus / Minus

                                                                         
Query: 53    ggaacgaccgggcttcttatctgggccgtcaccctcgccggcctcctcggcggnggcgcc 112
             ||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 54597 ggaaccaccgggcttctgatctgggccgtgaccctcgccgggctcctcggcggcggcgcc 54538

                                                 
Query: 113   ctcctngtctacaataccagcgctctcgccggctaa 148
             ||||| |||||||| |||||||| ||||||||||||
Sbjct: 54537 ctcctcgtctacaacaccagcgccctcgccggctaa 54502

>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 46.1 bits (23), Expect = 0.044
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 88      cgccggcctcctcggcggnggcgccc 113
               |||||||||||||||||| |||||||
Sbjct: 3325834 cgccggcctcctcggcgggggcgccc 3325859

>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 79      cgtcaccctcgccggcctcctcggcg 104
               |||||||||||| |||||||||||||
Sbjct: 2296682 cgtcaccctcgcgggcctcctcggcg 2296707

>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 84     ccctcgccggcctcctcggcg 104
              |||||||||||||||||||||
Sbjct: 118590 ccctcgccggcctcctcggcg 118610

>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 85     cctcgccggcctcctcggcgg 105
              |||||||||||||||||||||
Sbjct: 521751 cctcgccggcctcctcggcgg 521771

>ref|XM_549990.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2215

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 85  cctcgccggcctcctcggcg 104
           ||||||||||||||||||||
Sbjct: 811 cctcgccggcctcctcggcg 830

>ref|XM_549996.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1909

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 85  cctcgccggcctcctcggcg 104
           ||||||||||||||||||||
Sbjct: 751 cctcgccggcctcctcggcg 770

>gb|AY232052.1| Drosophila yakuba clone yak-ad_CG4800 mRNA sequence
          Length = 440

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 83  accctcgccggcctcctcggcggnggc 109
           ||||||| ||||||||||||||| |||
Sbjct: 171 accctcgtcggcctcctcggcggaggc 145

>gb|AY231799.1| Drosophila yakuba clone yak-em_CG4800 mRNA sequence
          Length = 516

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 83  accctcgccggcctcctcggcggnggc 109
           ||||||| ||||||||||||||| |||
Sbjct: 171 accctcgtcggcctcctcggcggaggc 145

>gb|AF262979.1|AF262979 Triticum aestivum protein disulfide isomerase 1 precursor (PDI1)
           mRNA, complete cds
          Length = 1784

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 91  cggcctcctcggcggnggcgccctcct 117
           ||||||||||||||| |||| ||||||
Sbjct: 128 cggcctcctcggcggcggcggcctcct 102

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 85      cctcgccggcctcctcggcg 104
               ||||||||||||||||||||
Sbjct: 1486739 cctcgccggcctcctcggcg 1486758



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 85      cctcgccggcctcctcggcg 104
               ||||||||||||||||||||
Sbjct: 1443094 cctcgccggcctcctcggcg 1443113

>dbj|AP002860.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0409B08
          Length = 134673

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    cctcgccggcctcctcggcg 104
             ||||||||||||||||||||
Sbjct: 52387 cctcgccggcctcctcggcg 52406



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 85   cctcgccggcctcctcggcg 104
            ||||||||||||||||||||
Sbjct: 8742 cctcgccggcctcctcggcg 8761

>dbj|AK121464.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145F10, full
           insert sequence
          Length = 2215

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 85  cctcgccggcctcctcggcg 104
           ||||||||||||||||||||
Sbjct: 811 cctcgccggcctcctcggcg 830

>dbj|AK109876.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-C02, full
           insert sequence
          Length = 1909

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 85  cctcgccggcctcctcggcg 104
           ||||||||||||||||||||
Sbjct: 751 cctcgccggcctcctcggcg 770

>emb|AJ868105.1| Triticum aestivum subsp. aestivum mRNA for protein disulfide
           isomerase (PDI gene), clone CPDI-4A
          Length = 1745

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 91  cggcctcctcggcggnggcgccctcct 117
           ||||||||||||||| |||| ||||||
Sbjct: 135 cggcctcctcggcggcggcggcctcct 109

>emb|AJ868102.1| Triticum aestivum subsp. aestivum PDI gene for protein disulfide
           isomerase, exons 1-10, clone GPDI-4A
          Length = 3561

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 91  cggcctcctcggcggnggcgccctcct 117
           ||||||||||||||| |||| ||||||
Sbjct: 135 cggcctcctcggcggcggcggcctcct 109

>dbj|AP002909.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0044F08
          Length = 141528

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     cctcgccggcctcctcggcg 104
              ||||||||||||||||||||
Sbjct: 136360 cctcgccggcctcctcggcg 136379



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    cctcgccggcctcctcggcg 104
             ||||||||||||||||||||
Sbjct: 92715 cctcgccggcctcctcggcg 92734


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 905,091
Number of Sequences: 3902068
Number of extensions: 905091
Number of successful extensions: 52967
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52728
Number of HSP's gapped (non-prelim): 239
length of query: 212
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 190
effective length of database: 17,147,199,772
effective search space: 3257967956680
effective search space used: 3257967956680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)