Clone Name
basdd07
Clone Library Name
barley_pub
No.
Definition
Score (bits)
E Value
1 gb|AY108278.1| Zea mays PCO119899 mRNA sequence
167
4e-38
2 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
145
2e-31
3 gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare str...
145
2e-31
4 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
145
2e-31
5 dbj|AK111964.1| Oryza sativa (japonica cultivar-group) cDNA clon...
145
2e-31
6 dbj|AK111910.1| Oryza sativa (japonica cultivar-group) cDNA clon...
145
2e-31
7 ref|NM_202647.1| Arabidopsis thaliana ubiquitin-protein ligase/ ...
48
0.026
8 ref|NM_113852.2| Arabidopsis thaliana ubiquitin-protein ligase/ ...
48
0.026
9 gb|DQ086861.1| Arabidopsis thaliana At3g29270 mRNA, complete cds
48
0.026
10 emb|BX822667.1|CNS0A60N Arabidopsis thaliana Full-length cDNA Co...
48
0.026
11 gb|BT004444.1| Arabidopsis thaliana clone U20221 unknown protein...
48
0.026
12 gb|BT002808.1| Arabidopsis thaliana clone RAFL15-02-A01 (R20221)...
48
0.026
13 dbj|AP002045.1| Arabidopsis thaliana genomic DNA, chromosome 3, ...
48
0.026
14 ref|NM_122376.3| Arabidopsis thaliana hydrolase/ zinc ion bindin...
46
0.10
15 gb|BT020197.1| Arabidopsis thaliana At5g24670 mRNA, complete cds
46
0.10
16 gb|BT015762.1| Arabidopsis thaliana At5g24670 mRNA, complete cds
46
0.10
17 emb|BX829682.1|CNS09YQM Arabidopsis thaliana Full-length cDNA Co...
46
0.10
18 dbj|AB016881.1| Arabidopsis thaliana genomic DNA, chromosome 5, ...
46
0.10
19 gb|AC121504.14| Mus musculus chromosome 13, clone RP24-140A15, c...
46
0.10
20 gb|AC154555.3| Mus musculus BAC clone RP23-418L12 from chromosom...
42
1.6
21 emb|CT030693.7| Mouse DNA sequence from clone RP24-109B11 on chr...
42
1.6
22 emb|Z70210.1|CEK08H2 Caenorhabditis elegans Cosmid K08H2, comple...
40
6.4
23 gb|AC124276.5| Homo sapiens chromosome 11, clone RP13-631K18, co...
40
6.4
24 gb|AC161168.6| Mus musculus chromosome 1, clone RP24-364J15, com...
40
6.4
25 gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
40
6.4
26 gb|AC118656.4| Homo sapiens chromosome 11, clone RP11-313H5, com...
40
6.4
27 dbj|BS000010.1| Pan troglodytes chromosome 22 clone:PTB-095F11, ...
40
6.4
28 emb|AL136293.5|CNS01DVX Human chromosome 14 DNA sequence BAC C-2...
40
6.4
29 gb|AC102788.7| Mus musculus chromosome 1, clone RP23-437G8, comp...
40
6.4
30 emb|AL935188.7| Zebrafish DNA sequence from clone CH211-243G6, c...
40
6.4
31 emb|X05177.1|DFUBX1 Drosophila funebris ubx (Ultrabithorax) gene...
40
6.4
>gb| AY108278.1 | Zea mays PCO119899 mRNA sequence
Length = 1540
Score = 167 bits (84), Expect = 4e-38
Identities = 199/236 (84%), Gaps = 1/236 (0%)
Strand = Plus / Plus
Query: 178 tctctccagaagctcatggtgtgctttgtgcagctgacggccaagttcccgctcgtgata 237
||||| || ||||| ||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 1084 tctctgcaaaagcttatggtgtgcttcatgcagctgacggccaagttcccactcgtgata 1143
Query: 238 atgtttcttctcatagttctctatgccgtccctgccagcgccgcggttctgctcctgtat 297
|| ||||| || ||||| || ||||| |||||||| || || || |||||| | || ||
Sbjct: 1144 atctttctgctgatagtcctttatgctgtccctgcaagtgctgctgttctggttctctac 1203
Query: 298 gtccttgtcacgtttttgtttgcgctgccgtcgtttctgatcctctactttgcttatccc 357
| ||||||||||||||||||||| ||||| || ||| |||||||||||||||| || |||
Sbjct: 1204 gcccttgtcacgtttttgtttgcactgccctcatttttgatcctctactttgcctacccc 1263
Query: 358 accttggactggctcgtgagagagatattcacttgagccgtgctgttctgaaatgt 413
| |||||| ||||| || |||||||| ||| ||| | ||||||| ||||||||||
Sbjct: 1264 agcttggattggcttgtcagagagatcttcgcttaattcgtgctg-tctgaaatgt 1318
>gb| DP000009.1 | Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 145 bits (73), Expect = 2e-31
Identities = 163/193 (84%)
Strand = Plus / Plus
Query: 202 tttgtgcagctgacggccaagttcccgctcgtgataatgtttcttctcatagttctctat 261
||||| ||| |||| |||||||| || ||||||||||| || ||||| |||||||| |||
Sbjct: 5769042 tttgttcagatgacagccaagtttccactcgtgataattttccttctgatagttctatat 5769101
Query: 262 gccgtccctgccagcgccgcggttctgctcctgtatgtccttgtcacgtttttgtttgcg 321
|| |||||||| |||| || ||||| | ||||||||||||| || ||||||||||
Sbjct: 5769102 gctgtccctgcaagcgtagcagttctagtattgtatgtccttgttacagttttgtttgca 5769161
Query: 322 ctgccgtcgtttctgatcctctactttgcttatcccaccttggactggctcgtgagagag 381
|||||||| ||| |||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 5769162 ctgccgtcctttttgatcctctactttgcttatcccagtttggattggctcgttagagag 5769221
Query: 382 atattcacttgag 394
|| |||| |||||
Sbjct: 5769222 atcttcaattgag 5769234
>gb| AC104179.1 | Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0021B21, from chromosome 3, complete sequence
Length = 166777
Score = 145 bits (73), Expect = 2e-31
Identities = 163/193 (84%)
Strand = Plus / Minus
Query: 202 tttgtgcagctgacggccaagttcccgctcgtgataatgtttcttctcatagttctctat 261
||||| ||| |||| |||||||| || ||||||||||| || ||||| |||||||| |||
Sbjct: 62129 tttgttcagatgacagccaagtttccactcgtgataattttccttctgatagttctatat 62070
Query: 262 gccgtccctgccagcgccgcggttctgctcctgtatgtccttgtcacgtttttgtttgcg 321
|| |||||||| |||| || ||||| | ||||||||||||| || ||||||||||
Sbjct: 62069 gctgtccctgcaagcgtagcagttctagtattgtatgtccttgttacagttttgtttgca 62010
Query: 322 ctgccgtcgtttctgatcctctactttgcttatcccaccttggactggctcgtgagagag 381
|||||||| ||| |||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 62009 ctgccgtcctttttgatcctctactttgcttatcccagtttggattggctcgttagagag 61950
Query: 382 atattcacttgag 394
|| |||| |||||
Sbjct: 61949 atcttcaattgag 61937
>dbj| AP008209.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 145 bits (73), Expect = 2e-31
Identities = 163/193 (84%)
Strand = Plus / Plus
Query: 202 tttgtgcagctgacggccaagttcccgctcgtgataatgtttcttctcatagttctctat 261
||||| ||| |||| |||||||| || ||||||||||| || ||||| |||||||| |||
Sbjct: 5768255 tttgttcagatgacagccaagtttccactcgtgataattttccttctgatagttctatat 5768314
Query: 262 gccgtccctgccagcgccgcggttctgctcctgtatgtccttgtcacgtttttgtttgcg 321
|| |||||||| |||| || ||||| | ||||||||||||| || ||||||||||
Sbjct: 5768315 gctgtccctgcaagcgtagcagttctagtattgtatgtccttgttacagttttgtttgca 5768374
Query: 322 ctgccgtcgtttctgatcctctactttgcttatcccaccttggactggctcgtgagagag 381
|||||||| ||| |||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 5768375 ctgccgtcctttttgatcctctactttgcttatcccagtttggattggctcgttagagag 5768434
Query: 382 atattcacttgag 394
|| |||| |||||
Sbjct: 5768435 atcttcaattgag 5768447
>dbj| AK111964.1 | Oryza sativa (japonica cultivar-group) cDNA clone:006-201-H12, full
insert sequence
Length = 1184
Score = 145 bits (73), Expect = 2e-31
Identities = 163/193 (84%)
Strand = Plus / Plus
Query: 202 tttgtgcagctgacggccaagttcccgctcgtgataatgtttcttctcatagttctctat 261
||||| ||| |||| |||||||| || ||||||||||| || ||||| |||||||| |||
Sbjct: 799 tttgttcagatgacagccaagtttccactcgtgataattttccttctgatagttctatat 858
Query: 262 gccgtccctgccagcgccgcggttctgctcctgtatgtccttgtcacgtttttgtttgcg 321
|| |||||||| |||| || ||||| | ||||||||||||| || ||||||||||
Sbjct: 859 gctgtccctgcaagcgtagcagttctagtattgtatgtccttgttacagttttgtttgca 918
Query: 322 ctgccgtcgtttctgatcctctactttgcttatcccaccttggactggctcgtgagagag 381
|||||||| ||| |||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 919 ctgccgtcctttttgatcctctactttgcttatcccagtttggattggctcgttagagag 978
Query: 382 atattcacttgag 394
|| |||| |||||
Sbjct: 979 atcttcaattgag 991
>dbj| AK111910.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J033090H12, full
insert sequence
Length = 1198
Score = 145 bits (73), Expect = 2e-31
Identities = 163/193 (84%)
Strand = Plus / Plus
Query: 202 tttgtgcagctgacggccaagttcccgctcgtgataatgtttcttctcatagttctctat 261
||||| ||| |||| |||||||| || ||||||||||| || ||||| |||||||| |||
Sbjct: 813 tttgttcagatgacagccaagtttccactcgtgataattttccttctgatagttctatat 872
Query: 262 gccgtccctgccagcgccgcggttctgctcctgtatgtccttgtcacgtttttgtttgcg 321
|| |||||||| |||| || ||||| | ||||||||||||| || ||||||||||
Sbjct: 873 gctgtccctgcaagcgtagcagttctagtattgtatgtccttgttacagttttgtttgca 932
Query: 322 ctgccgtcgtttctgatcctctactttgcttatcccaccttggactggctcgtgagagag 381
|||||||| ||| |||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 933 ctgccgtcctttttgatcctctactttgcttatcccagtttggattggctcgttagagag 992
Query: 382 atattcacttgag 394
|| |||| |||||
Sbjct: 993 atcttcaattgag 1005
>ref| NM_202647.1 | Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding
AT3G29270 transcript variant AT3G29270.2 mRNA, complete
cds
Length = 2119
Score = 48.1 bits (24), Expect = 0.026
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 325 ccgtcgtttctgatcctctactttgcttatcc 356
||||||||||| ||||||||||| ||||||||
Sbjct: 1736 ccgtcgtttctcatcctctacttcgcttatcc 1767
>ref| NM_113852.2 | Arabidopsis thaliana ubiquitin-protein ligase/ zinc ion binding
AT3G29270 transcript variant AT3G29270.1 mRNA, complete
cds
Length = 1251
Score = 48.1 bits (24), Expect = 0.026
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 325 ccgtcgtttctgatcctctactttgcttatcc 356
||||||||||| ||||||||||| ||||||||
Sbjct: 868 ccgtcgtttctcatcctctacttcgcttatcc 899
>gb| DQ086861.1 | Arabidopsis thaliana At3g29270 mRNA, complete cds
Length = 792
Score = 48.1 bits (24), Expect = 0.026
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 325 ccgtcgtttctgatcctctactttgcttatcc 356
||||||||||| ||||||||||| ||||||||
Sbjct: 724 ccgtcgtttctcatcctctacttcgcttatcc 755
>emb| BX822667.1 |CNS0A60N Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB57ZC10 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1990
Score = 48.1 bits (24), Expect = 0.026
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 325 ccgtcgtttctgatcctctactttgcttatcc 356
||||||||||| ||||||||||| ||||||||
Sbjct: 1736 ccgtcgtttctcatcctctacttcgcttatcc 1767
>gb| BT004444.1 | Arabidopsis thaliana clone U20221 unknown protein (At3g29270) mRNA,
complete cds
Length = 823
Score = 48.1 bits (24), Expect = 0.026
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 325 ccgtcgtttctgatcctctactttgcttatcc 356
||||||||||| ||||||||||| ||||||||
Sbjct: 724 ccgtcgtttctcatcctctacttcgcttatcc 755
>gb| BT002808.1 | Arabidopsis thaliana clone RAFL15-02-A01 (R20221) unknown protein
(At3g29270) mRNA, complete cds
Length = 1210
Score = 48.1 bits (24), Expect = 0.026
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 325 ccgtcgtttctgatcctctactttgcttatcc 356
||||||||||| ||||||||||| ||||||||
Sbjct: 868 ccgtcgtttctcatcctctacttcgcttatcc 899
>dbj| AP002045.1 | Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MMF24
Length = 18605
Score = 48.1 bits (24), Expect = 0.026
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 325 ccgtcgtttctgatcctctactttgcttatcc 356
||||||||||| ||||||||||| ||||||||
Sbjct: 4295 ccgtcgtttctcatcctctacttcgcttatcc 4326
>ref| NM_122376.3 | Arabidopsis thaliana hydrolase/ zinc ion binding AT5G24670 mRNA,
complete cds
Length = 1785
Score = 46.1 bits (23), Expect = 0.10
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 122 cctcttctgccagagatagaaat 144
|||||||||||||||||||||||
Sbjct: 1204 cctcttctgccagagatagaaat 1226
>gb| BT020197.1 | Arabidopsis thaliana At5g24670 mRNA, complete cds
Length = 1203
Score = 46.1 bits (23), Expect = 0.10
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 122 cctcttctgccagagatagaaat 144
|||||||||||||||||||||||
Sbjct: 794 cctcttctgccagagatagaaat 816
>gb| BT015762.1 | Arabidopsis thaliana At5g24670 mRNA, complete cds
Length = 1593
Score = 46.1 bits (23), Expect = 0.10
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 122 cctcttctgccagagatagaaat 144
|||||||||||||||||||||||
Sbjct: 1135 cctcttctgccagagatagaaat 1157
>emb| BX829682.1 |CNS09YQM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB2ZB05 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1651
Score = 46.1 bits (23), Expect = 0.10
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 122 cctcttctgccagagatagaaat 144
|||||||||||||||||||||||
Sbjct: 1168 cctcttctgccagagatagaaat 1190
>dbj| AB016881.1 | Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXC17
Length = 27263
Score = 46.1 bits (23), Expect = 0.10
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 122 cctcttctgccagagatagaaat 144
|||||||||||||||||||||||
Sbjct: 10248 cctcttctgccagagatagaaat 10270
>gb| AC121504.14 | Mus musculus chromosome 13, clone RP24-140A15, complete sequence
Length = 156791
Score = 46.1 bits (23), Expect = 0.10
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 183 ccagaagctcatggtgtgctttg 205
|||||||||||||||||||||||
Sbjct: 26937 ccagaagctcatggtgtgctttg 26959
>gb| AC154555.3 | Mus musculus BAC clone RP23-418L12 from chromosome 16, complete sequence
Length = 192614
Score = 42.1 bits (21), Expect = 1.6
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 152 gcaacacctccaacactgcca 172
|||||||||||||||||||||
Sbjct: 113643 gcaacacctccaacactgcca 113663
>emb| CT030693.7 | Mouse DNA sequence from clone RP24-109B11 on chromosome 16, complete
sequence
Length = 166299
Score = 42.1 bits (21), Expect = 1.6
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 152 gcaacacctccaacactgcca 172
|||||||||||||||||||||
Sbjct: 35594 gcaacacctccaacactgcca 35614
>emb| Z70210.1 |CEK08H2 Caenorhabditis elegans Cosmid K08H2, complete sequence
Length = 36539
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 431 ctttgtgaaagtgaaacaaa 450
||||||||||||||||||||
Sbjct: 14732 ctttgtgaaagtgaaacaaa 14713
>gb| AC124276.5 | Homo sapiens chromosome 11, clone RP13-631K18, complete sequence
Length = 195122
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 407 gaaatgtaagtacagtttat 426
||||||||||||||||||||
Sbjct: 153257 gaaatgtaagtacagtttat 153238
>gb| AC161168.6 | Mus musculus chromosome 1, clone RP24-364J15, complete sequence
Length = 163341
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 300 ccttgtcacgtttttgtttg 319
||||||||||||||||||||
Sbjct: 156239 ccttgtcacgtttttgtttg 156258
>gb| CP000250.1 | Rhodopseudomonas palustris HaA2, complete genome
Length = 5331656
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 111 acgggcagagacctcttctg 130
||||||||||||||||||||
Sbjct: 1232496 acgggcagagacctcttctg 1232515
>gb| AC118656.4 | Homo sapiens chromosome 11, clone RP11-313H5, complete sequence
Length = 155143
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 407 gaaatgtaagtacagtttat 426
||||||||||||||||||||
Sbjct: 16131 gaaatgtaagtacagtttat 16150
>dbj| BS000010.1 | Pan troglodytes chromosome 22 clone:PTB-095F11, map 22, complete
sequences
Length = 177250
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 14 caaagttccatttctctggt 33
||||||||||||||||||||
Sbjct: 108539 caaagttccatttctctggt 108520
>emb| AL136293.5 |CNS01DVX Human chromosome 14 DNA sequence BAC C-2555C10 of library CalTech-D from
chromosome 14 of Homo sapiens (Human), complete sequence
Length = 226035
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 181 ctccagaagctcatggtgtg 200
||||||||||||||||||||
Sbjct: 153868 ctccagaagctcatggtgtg 153849
>gb| AC102788.7 | Mus musculus chromosome 1, clone RP23-437G8, complete sequence
Length = 212403
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 300 ccttgtcacgtttttgtttg 319
||||||||||||||||||||
Sbjct: 99998 ccttgtcacgtttttgtttg 99979
>emb| AL935188.7 | Zebrafish DNA sequence from clone CH211-243G6, complete sequence
Length = 160946
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 231 cgtgataatgtttcttctca 250
||||||||||||||||||||
Sbjct: 87527 cgtgataatgtttcttctca 87508
>emb| X05177.1 |DFUBX1 Drosophila funebris ubx (Ultrabithorax) gene 5' region
Length = 3002
Score = 40.1 bits (20), Expect = 6.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 146 ccgctggcaacacctccaac 165
||||||||||||||||||||
Sbjct: 2519 ccgctggcaacacctccaac 2538
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,044,341
Number of Sequences: 3902068
Number of extensions: 4044341
Number of successful extensions: 74475
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74358
Number of HSP's gapped (non-prelim): 112
length of query: 477
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 455
effective length of database: 17,147,199,772
effective search space: 7801975896260
effective search space used: 7801975896260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)