ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdd05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK099561.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034J20, full insert sequence Length = 1002 Score = 272 bits (137), Expect = 9e-70 Identities = 236/269 (87%) Strand = Plus / Plus Query: 183 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 242 ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| |||||||| Sbjct: 252 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 311 Query: 243 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 302 || || ||||||| |||| |||||||||| |||||||||||||||||||| | ||||| Sbjct: 312 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 371 Query: 303 gccgacaccgagttcgacatgattgggcagaacgccatgaaagagctcgatcaaattggg 362 || |||||||||||||| ||||||| |||||||||||||||||||| ||| || ||||| Sbjct: 372 gcggacaccgagttcgatctgattggccagaacgccatgaaagagcttgatgaagttggg 431 Query: 363 gaccagataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatg 422 ||||||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | Sbjct: 432 gaccagataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagtt 491 Query: 423 caaaggcaggagatagaaatgaatgagag 451 ||||||||||||||||||||||| ||||| Sbjct: 492 caaaggcaggagatagaaatgaacgagag 520 Score = 40.1 bits (20), Expect = 6.1 Identities = 53/64 (82%) Strand = Plus / Plus Query: 28 aagaggagatgcttactcttaacaccgttcggacatcccttccctcgccgcgcagatcct 87 ||||||||||||||| |||| ||||| || ||| ||| |||| |||| | |||||||| Sbjct: 100 aagaggagatgcttaatcttcacaccattaggatgtccattccttcgctacacagatcct 159 Query: 88 cccc 91 |||| Sbjct: 160 cccc 163
>gb|AY112109.1| Zea mays CL26172_1 mRNA sequence Length = 768 Score = 248 bits (125), Expect = 1e-62 Identities = 218/249 (87%) Strand = Plus / Minus Query: 197 ccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaaggtccggatcacaaa 256 |||||||||||| |||||| | |||||||||||||||||||||||||| || |||||| | Sbjct: 569 ccagcaggaggttcttgcacagatcgccatgcttcagacgcagaaggtgcgcatcacaga 510 Query: 257 cttcctggacgagcggtctgcttacctgaccaagttcaccaaggacgccgacaccgagtt 316 |||| |||||||||| ||||||||||||||||||||| |||||||||||||| | ||||| Sbjct: 509 cttcttggacgagcgctctgcttacctgaccaagttcgccaaggacgccgactcggagtt 450 Query: 317 cgacatgattgggcagaacgccatgaaagagctcgatcaaattggggaccagataatgga 376 |||| ||||||||||||||||||||||||| || ||| |||| ||||||||| |||| Sbjct: 449 cgacctgattgggcagaacgccatgaaagaacttgatgccgttggtgaccagatactgga 390 Query: 377 gcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaaggcaggagat 436 | | ||||||||||||||||| ||| ||||||||| ||||| | ||| |||| ||||| Sbjct: 389 gaggctcgacagcaagatgcaagccttcgaggagacggctgaggtacaacggcaagagat 330 Query: 437 agaaatgaa 445 ||||||||| Sbjct: 329 agaaatgaa 321
>ref|NM_190643.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 597 Score = 236 bits (119), Expect = 5e-59 Identities = 200/227 (88%) Strand = Plus / Plus Query: 225 atgcttcagacgcagaaggtccggatcacaaacttcctggacgagcggtctgcttacctg 284 ||||||||| |||||||||| || ||||||| |||| |||||||||| |||||||||||| Sbjct: 1 atgcttcaggcgcagaaggtgcgcatcacaagcttcttggacgagcgctctgcttacctg 60 Query: 285 accaagttcaccaaggacgccgacaccgagttcgacatgattgggcagaacgccatgaaa 344 |||||||| | ||||| || |||||||||||||| ||||||| ||||||||||||||| Sbjct: 61 accaagtttgcgaaggatgcggacaccgagttcgatctgattggccagaacgccatgaaa 120 Query: 345 gagctcgatcaaattggggaccagataatggagcgtctcgacagcaagatgcagtcctac 404 ||||| ||| || |||||||||||||||||||| | || ||||||||||||||| ||| Sbjct: 121 gagcttgatgaagttggggaccagataatggagaggctggacagcaagatgcaggccttt 180 Query: 405 gaggagacagctgaaatgcaaaggcaggagatagaaatgaatgagag 451 |||||||| |||||| | ||||||||||||||||||||||| ||||| Sbjct: 181 gaggagactgctgaagttcaaaggcaggagatagaaatgaacgagag 227
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 186 bits (94), Expect = 4e-44 Identities = 163/186 (87%) Strand = Plus / Minus Query: 183 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 242 ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| |||||||| Sbjct: 36730209 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 36730150 Query: 243 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 302 || || ||||||| |||| |||||||||| |||||||||||||||||||| | ||||| Sbjct: 36730149 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 36730090 Query: 303 gccgacaccgagttcgacatgattgggcagaacgccatgaaagagctcgatcaaattggg 362 || |||||||||||||| ||||||| |||||||||||||||||||| ||| || ||||| Sbjct: 36730089 gcggacaccgagttcgatctgattggccagaacgccatgaaagagcttgatgaagttggg 36730030 Query: 363 gaccag 368 |||||| Sbjct: 36730029 gaccag 36730024 Score = 89.7 bits (45), Expect = 7e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 367 agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 426 ||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | |||| Sbjct: 36729952 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 36729893 Query: 427 ggcaggagatagaaatgaatgagag 451 ||||||||||||||||||| ||||| Sbjct: 36729892 ggcaggagatagaaatgaacgagag 36729868 Score = 40.1 bits (20), Expect = 6.1 Identities = 53/64 (82%) Strand = Plus / Minus Query: 28 aagaggagatgcttactcttaacaccgttcggacatcccttccctcgccgcgcagatcct 87 ||||||||||||||| |||| ||||| || ||| ||| |||| |||| | |||||||| Sbjct: 36730361 aagaggagatgcttaatcttcacaccattaggatgtccattccttcgctacacagatcct 36730302 Query: 88 cccc 91 |||| Sbjct: 36730301 cccc 36730298
>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529E05 Length = 134982 Score = 186 bits (94), Expect = 4e-44 Identities = 163/186 (87%) Strand = Plus / Minus Query: 183 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 242 ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| |||||||| Sbjct: 56524 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 56465 Query: 243 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 302 || || ||||||| |||| |||||||||| |||||||||||||||||||| | ||||| Sbjct: 56464 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 56405 Query: 303 gccgacaccgagttcgacatgattgggcagaacgccatgaaagagctcgatcaaattggg 362 || |||||||||||||| ||||||| |||||||||||||||||||| ||| || ||||| Sbjct: 56404 gcggacaccgagttcgatctgattggccagaacgccatgaaagagcttgatgaagttggg 56345 Query: 363 gaccag 368 |||||| Sbjct: 56344 gaccag 56339 Score = 89.7 bits (45), Expect = 7e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 367 agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 426 ||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | |||| Sbjct: 56267 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 56208 Query: 427 ggcaggagatagaaatgaatgagag 451 ||||||||||||||||||| ||||| Sbjct: 56207 ggcaggagatagaaatgaacgagag 56183 Score = 40.1 bits (20), Expect = 6.1 Identities = 53/64 (82%) Strand = Plus / Minus Query: 28 aagaggagatgcttactcttaacaccgttcggacatcccttccctcgccgcgcagatcct 87 ||||||||||||||| |||| ||||| || ||| ||| |||| |||| | |||||||| Sbjct: 56676 aagaggagatgcttaatcttcacaccattaggatgtccattccttcgctacacagatcct 56617 Query: 88 cccc 91 |||| Sbjct: 56616 cccc 56613
>dbj|AK105423.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-C01, full insert sequence Length = 3098 Score = 137 bits (69), Expect = 4e-29 Identities = 120/137 (87%) Strand = Plus / Minus Query: 183 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 242 ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| |||||||| Sbjct: 2645 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 2586 Query: 243 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 302 || || ||||||| |||| |||||||||| |||||||||||||||||||| | ||||| Sbjct: 2585 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 2526 Query: 303 gccgacaccgagttcga 319 || |||||||||||||| Sbjct: 2525 gcggacaccgagttcga 2509 Score = 89.7 bits (45), Expect = 7e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 367 agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 426 ||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | |||| Sbjct: 2482 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 2423 Query: 427 ggcaggagatagaaatgaatgagag 451 ||||||||||||||||||| ||||| Sbjct: 2422 ggcaggagatagaaatgaacgagag 2398 Score = 40.1 bits (20), Expect = 6.1 Identities = 53/64 (82%) Strand = Plus / Minus Query: 28 aagaggagatgcttactcttaacaccgttcggacatcccttccctcgccgcgcagatcct 87 ||||||||||||||| |||| ||||| || ||| ||| |||| |||| | |||||||| Sbjct: 2797 aagaggagatgcttaatcttcacaccattaggatgtccattccttcgctacacagatcct 2738 Query: 88 cccc 91 |||| Sbjct: 2737 cccc 2734
>dbj|AK101805.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K09, full insert sequence Length = 3051 Score = 137 bits (69), Expect = 4e-29 Identities = 120/137 (87%) Strand = Plus / Minus Query: 183 ggcggtgaccaacgccagcaggaggtgcttgcaaaaatcgccatgcttcagacgcagaag 242 ||||| ||| |||||||||||||||| ||||| || ||||| ||||||||| |||||||| Sbjct: 2609 ggcggagacaaacgccagcaggaggtccttgcgaagatcgcaatgcttcaggcgcagaag 2550 Query: 243 gtccggatcacaaacttcctggacgagcggtctgcttacctgaccaagttcaccaaggac 302 || || ||||||| |||| |||||||||| |||||||||||||||||||| | ||||| Sbjct: 2549 gtgcgcatcacaagcttcttggacgagcgctctgcttacctgaccaagtttgcgaaggat 2490 Query: 303 gccgacaccgagttcga 319 || |||||||||||||| Sbjct: 2489 gcggacaccgagttcga 2473 Score = 89.7 bits (45), Expect = 7e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 367 agataatggagcgtctcgacagcaagatgcagtcctacgaggagacagctgaaatgcaaa 426 ||||||||||| | || ||||||||||||||| ||| |||||||| |||||| | |||| Sbjct: 2461 agataatggagaggctggacagcaagatgcaggcctttgaggagactgctgaagttcaaa 2402 Query: 427 ggcaggagatagaaatgaatgagag 451 ||||||||||||||||||| ||||| Sbjct: 2401 ggcaggagatagaaatgaacgagag 2377 Score = 40.1 bits (20), Expect = 6.1 Identities = 53/64 (82%) Strand = Plus / Minus Query: 28 aagaggagatgcttactcttaacaccgttcggacatcccttccctcgccgcgcagatcct 87 ||||||||||||||| |||| ||||| || ||| ||| |||| |||| | |||||||| Sbjct: 2761 aagaggagatgcttaatcttcacaccattaggatgtccattccttcgctacacagatcct 2702 Query: 88 cccc 91 |||| Sbjct: 2701 cccc 2698
>gb|AC162890.4| Mus musculus chromosome 3, clone RP23-362E13, complete sequence Length = 113095 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 281 cctgaccaagttcaccaaggac 302 |||||||||||||||||||||| Sbjct: 38417 cctgaccaagttcaccaaggac 38396
>gb|AC125349.3| Mus musculus BAC clone RP23-394P9 from chromosome 3, complete sequence Length = 194060 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 281 cctgaccaagttcaccaaggac 302 |||||||||||||||||||||| Sbjct: 41344 cctgaccaagttcaccaaggac 41365
>dbj|AP007284.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT23F02, TM0183, complete sequence Length = 70173 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 198 cagcaggaggtgcttgcaaaaa 219 |||||||||||||||||||||| Sbjct: 15867 cagcaggaggtgcttgcaaaaa 15888
>gb|AC087859.3| Homo sapiens chromosome 3 clone RP11-34L16 map 3p, complete sequence Length = 151927 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 17 cccaaagaatcaagaggagat 37 ||||||||||||||||||||| Sbjct: 84555 cccaaagaatcaagaggagat 84535
>ref|XM_322205.1| Neurospora crassa OR74A hypothetical protein (NCU00120.1) partial mRNA Length = 3714 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 362 ggaccagataatggagcgtctcga 385 |||||||||||||||| ||||||| Sbjct: 2173 ggaccagataatggagtgtctcga 2150
>ref|XM_952151.1| Neurospora crassa OR74A hypothetical protein (NCU00120.1) partial mRNA Length = 3714 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 362 ggaccagataatggagcgtctcga 385 |||||||||||||||| ||||||| Sbjct: 2173 ggaccagataatggagtgtctcga 2150
>gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, complete sequence Length = 183075 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 tgcagtgcatcaaagcagga 120 |||||||||||||||||||| Sbjct: 171766 tgcagtgcatcaaagcagga 171785
>ref|XM_390936.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG10760.1) partial mRNA Length = 2469 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 caagagcagctccgaagatg 156 |||||||||||||||||||| Sbjct: 1996 caagagcagctccgaagatg 1977
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 182 cggcggtgaccaacgccagcagga 205 |||||||||||| ||||||||||| Sbjct: 2704598 cggcggtgaccagcgccagcagga 2704621
>gb|AC074335.11| Mus Musculus Strain C57BL6/J Chromosome 18 BAC, RP23-127B9, complete sequence Length = 201643 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 cagtgcatcaaagcaggaggagat 126 ||||| |||||||||||||||||| Sbjct: 117112 cagtgaatcaaagcaggaggagat 117135
>gb|AE005913.1| Caulobacter crescentus CB15 section 239 of 359 of the complete genome Length = 13785 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 284 gaccaagttcaccaaggacgccga 307 ||||||||||| |||||||||||| Sbjct: 4339 gaccaagttcagcaaggacgccga 4362
>gb|AC107220.4| Homo sapiens BAC clone RP11-586L23 from 4, complete sequence Length = 67392 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 gccagcaggaggtgcttgcaaaaa 219 ||||||||| |||||||||||||| Sbjct: 59334 gccagcaggtggtgcttgcaaaaa 59357
>gb|AC133565.5| Homo sapiens chromosome 16 clone RP11-895K13, complete sequence Length = 168538 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 69 ccctcgccgcgcagatcctccccgcgcc 96 ||||| ||||||||| |||||||||||| Sbjct: 138979 ccctccccgcgcagaccctccccgcgcc 139006 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,497,867 Number of Sequences: 3902068 Number of extensions: 3497867 Number of successful extensions: 72501 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72393 Number of HSP's gapped (non-prelim): 107 length of query: 456 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 434 effective length of database: 17,147,199,772 effective search space: 7441884701048 effective search space used: 7441884701048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
