>HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2
          Length = 863

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 27/78 (34%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
 Frame = -3

Query: 460 AESALRSMFSSPMGARSPPATEPRPADPRRR--------GASSPTLPCRCGAPQHRKTPS 305
           A S+ R+  +SP G    PAT   PA P RR         AS P+LP   GAP      S
Sbjct: 754 APSSPRAPRTSPYGVPGSPATRVGPALPARRLSRASRPLSASQPSLP--HGAPAPSPAAS 811

Query: 304 AXXXXXXXXXXRPWLTVR 251
           A           P  T R
Sbjct: 812 ARPASSSTPRLGPAPTTR 829

>SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein|
          Length = 977

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -3

Query: 406 PATEPRPADPRRRGASSPTLPCRCGAP 326
           PAT+ +P  PRRRG + PT P   GAP
Sbjct: 148 PATQEKPRRPRRRGPTRPTPP---GAP 171

>YMM1_CAEEL (P34489) Hypothetical protein K01B6.1|
          Length = 732

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 427 PMGARSPPATEPRPADPRRRGASSPTLPCR 338
           PM  RS P +   P  P RRG+ + +LP R
Sbjct: 235 PMQGRSSPKSPTSPTQPGRRGSQASSLPSR 264

>MTF1_HUMAN (Q14872) Metal-regulatory transcription factor 1 (Transcription|
           factor MTF-1) (MRE-binding transcription factor)
          Length = 753

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 15/69 (21%)
 Frame = -3

Query: 466 ATAESALRSMFSSPMGARSPPATEPRPADPRRR---------------GASSPTLPCRCG 332
           A  +SA     S   G  SPP  EP P  P                  G+SS TLP  C 
Sbjct: 637 ACRDSAKERASSRRKGCSSPPPPEPSPQAPDGPSLQLPAQTFSSAPVPGSSSSTLPSSCE 696

Query: 331 APQHRKTPS 305
             +  +TPS
Sbjct: 697 QSRQAETPS 705

>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2 (Brain cyclic nucleotide
           gated channel 2) (BCNG-2) (Hyperpolarization-activated
           cation channel 1) (HAC-1)
          Length = 863

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
 Frame = -3

Query: 460 AESALRSMFSSPMGARSPPATEPRPADPRRR--------GASSPTLPCRCGAP 326
           A S+ R+  +SP G    PAT   PA P RR         AS P+LP    AP
Sbjct: 754 APSSPRAPRTSPYGVPGSPATRVGPALPARRLSRASRPLSASQPSLPHGVPAP 806

>RGL2_MOUSE (Q61193) Ral guanine nucleotide dissociation stimulator-like 2|
           (RalGDS-like factor) (RAS-associated protein RAB2L)
          Length = 778

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -3

Query: 466 ATAESALRSMFS--SPM--GARSPPATEPRPADPRRRGASSPTLPCRCGAP 326
           ++ +SAL S  S  SP   G  SPPA+ PRP+   RR AS       CG+P
Sbjct: 580 SSLDSALESSPSLHSPADPGHLSPPASSPRPSRGHRRSAS-------CGSP 623

>HCN4_HUMAN (Q9Y3Q4) Potassium/sodium hyperpolarization-activated cyclic|
            nucleotide-gated channel 4
          Length = 1203

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -3

Query: 421  GARSPPATEPRPADPRRRGASSPTLPCRCGAPQHRKTP 308
            GARSP A +P PA P  RG          G P+H   P
Sbjct: 932  GARSPQAAQPSPAPPGARGG--------LGLPEHFLPP 961

>NUMBL_MOUSE (O08919) Numb-like protein|
          Length = 604

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -3

Query: 454 SALRSMFSSPMGARSPPATEPRPADPRRRGASSPTLPCRCG-APQHRKTPS 305
           +AL +  SS   +   PA+ P PA         P++P      P H++TPS
Sbjct: 361 NALCTQISSSFASAGAPASGPPPATTGTSAWGEPSVPAAAAFQPGHKRTPS 411

>EPHA5_CHICK (P54755) Ephrin type-A receptor 5 precursor (EC 2.7.10.1)|
           (Tyrosine-protein kinase receptor CEK7)
          Length = 1013

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 143 SALRRSAFHRRRSTPPRRSCVRTSAAPRSS 232
           S L    + RR S PP  +C R  +APRS+
Sbjct: 311 SCLCEEHYFRRESDPPTMACTRPPSAPRSA 340

>SYIM_CHICK (Q5ZKA2) Isoleucyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.5) (Isoleucine--tRNA ligase) (IleRS)
          Length = 1000

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 182 TPPRRSCVRTSAAPRSSGVFQWMTHRQPWTATANXXXXXXXXXXLPVLRCTT 337
           +PP+ + V   ++P S  V  W T  QPWT  AN            V++C T
Sbjct: 263 SPPKLASVIDGSSPAS--VLVWTT--QPWTVPANQAVCYMPDAEYSVVKCAT 310

>SYP2L_MOUSE (Q8BWB1) Synaptopodin 2-like protein|
          Length = 975

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 406 PATEPRPADPRRRGASSPTLPCRCGAP 326
           PAT+ +P   RRRG + P+LP   GAP
Sbjct: 145 PATQEKPRRTRRRGPARPSLP---GAP 168

>BRO1_ASPFU (Q4X0Z5) Vacuolar protein-sorting protein bro1 (BRO domain-containing|
            protein 1)
          Length = 976

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 18/55 (32%), Positives = 20/55 (36%)
 Frame = -3

Query: 427  PMGARSPPATEPRPADPRRRGASSPTLPCRCGAPQHRKTPSAXXXXXXXXXXRPW 263
            P     PP+T P P+ P     S P      G  QH KTPS            PW
Sbjct: 923  PQQPSYPPSTGPYPSGPGGYAQSRP-----YGTSQHHKTPS---QSQSSSSTDPW 969

>ODBA_PSEPU (P09060) 2-oxoisovalerate dehydrogenase alpha subunit (EC 1.2.4.4)|
           (Branched-chain alpha-keto acid dehydrogenase E1
           component alpha chain) (BCKDH E1-alpha)
          Length = 410

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +1

Query: 307 TASSGAAVHHIDKEGWGMTPLVSGDPPAAARWPGGSA 417
           T S   A   +   GW M   + GD   A+ W G  A
Sbjct: 179 TISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGA 215

>CTTB2_OTOGA (Q2QLG9) Cortactin-binding protein 2 (CortBP2)|
          Length = 1655

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -2

Query: 428 PDGSAEPPGHRAAAGGSPETRGVIPHPSLSMWCTAAP 318
           P GSA PPG  A  G +       PH S    C +AP
Sbjct: 392 PPGSAAPPGSAAPPGSAAPPGSAAPH-SFHSPCASAP 427

>RGL2_CANFA (Q5TJE5) Ral guanine nucleotide dissociation stimulator-like 2|
           (RAS-associated protein RAB2L)
          Length = 780

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 412 SPPATEPRPADPRRRGASSPTLPCRCGAP 326
           SPPA+ PRP+   RR AS       CG+P
Sbjct: 605 SPPASSPRPSRGHRRSAS-------CGSP 626

>CCDC9_HUMAN (Q9Y3X0) Coiled-coil domain-containing protein 9|
          Length = 531

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 421 GARSPPATEPRPADPRRRGASSPTLPCRCGAPQHR 317
           GA SP    P+P  P      +P  P    AP HR
Sbjct: 373 GAASPAPETPQPTSPETSPKETPMQPPEIPAPAHR 407

>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -3

Query: 433  SSPMGARSPPATE---PRPADPRRRGASSPTLPCRCGAPQHRKTPSA 302
            S P G   P  T    P+PA P R   +S + P    APQ  + P A
Sbjct: 3829 SQPAGKPQPGPTTAPGPQPAGPPRAEQASSSKPPAAKAPQQGRAPQA 3875

>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 4 (Hyperpolarization-activated
           cation channel 4) (HAC-4)
          Length = 1175

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -3

Query: 433 SSPMGARSPP--ATEP-RPADPRRRGASSPTLPCRCG 332
           +SP   R+PP  A EP RP  P    AS P +P  CG
Sbjct: 144 ASPGEDRTPPGLAAEPERPGAPAPPAASPPQVPSSCG 180

>UL49_VZVD (P09272) Tegument protein (Gene 9 protein)|
          Length = 302

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 13/39 (33%), Positives = 16/39 (41%)
 Frame = -2

Query: 434 LQPDGSAEPPGHRAAAGGSPETRGVIPHPSLSMWCTAAP 318
           L+      PPG  A A G P +    P  + S WC   P
Sbjct: 136 LEDSPKRAPPGAGAIASGRPISFSTAPKTATSSWCGPTP 174

>RGL2_HUMAN (O15211) Ral guanine nucleotide dissociation stimulator-like 2|
           (RalGDS-like factor) (RAS-associated protein RAB2L)
          Length = 777

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 412 SPPATEPRPADPRRRGASSPTLPCRCGAP 326
           SPPA+ PRP+   RR AS       CG+P
Sbjct: 602 SPPASSPRPSRGHRRSAS-------CGSP 623

>DYN_DROME (P27619) Dynamin (EC 3.6.5.5) (dDyn) (Protein shibire)|
          Length = 877

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
 Frame = -3

Query: 430 SPMGARSPPAT----EPRPADPRRRGASSPTLP 344
           S +G R+PP       P PA P R G  +P LP
Sbjct: 781 SSLGGRNPPLPPSTGRPAPAIPNRPGGGAPPLP 813


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,341,782
Number of Sequences: 219361
Number of extensions: 1023851
Number of successful extensions: 4868
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4843
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)