>emb|BX640440.1| Bordetella bronchiseptica strain RB50, complete genome; segment 4/16
          Length = 349497

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 421    ccatcgggctggagaacatcgacct 445
              |||||| ||||||||||||||||||
Sbjct: 227716 ccatcgtgctggagaacatcgacct 227692

>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment
           4/14
          Length = 348866

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 421 ccatcgggctggagaacatcgacct 445
           |||||| ||||||||||||||||||
Sbjct: 183 ccatcgtgctggagaacatcgacct 159

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 266     tggacggcgacggcgaactcc 286
               |||||||||||||||||||||
Sbjct: 9917744 tggacggcgacggcgaactcc 9917724

>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 299     tctcgcagacggcgtcttccg 319
               |||||||||||||||||||||
Sbjct: 2226895 tctcgcagacggcgtcttccg 2226915

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 266     tggacggcgacggcgaactcc 286
               |||||||||||||||||||||
Sbjct: 9917629 tggacggcgacggcgaactcc 9917609

>emb|AL954870.3|CNS08CD9 Oryza sativa chromosome 12, . BAC OSJNBb0112E17 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 140806

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 266   tggacggcgacggcgaactcc 286
             |||||||||||||||||||||
Sbjct: 14726 tggacggcgacggcgaactcc 14746

>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 374     ccggggatccgccggccgcggctc 397
               |||||||||||| |||||||||||
Sbjct: 3181088 ccggggatccgcgggccgcggctc 3181065

>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 424     tcgggctggagaacatcgac 443
               ||||||||||||||||||||
Sbjct: 1951340 tcgggctggagaacatcgac 1951321

>gb|AY046315.3| Bradyrhizobium japonicum inner membrane ABC transporter (ndvA) gene,
            partial cds; Pbp, phosphoribosyl-ATP pyrophosphohydrolase
            (his2), DedA (dedA), aspartate ammonium lyase (aspA), and
            fatty acid CoA-ligase (coaL) genes, complete cds; and
            unknown genes
          Length = 10628

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 443  cctcaacgccgactccgccg 462
            ||||||||||||||||||||
Sbjct: 5303 cctcaacgccgactccgccg 5322

>emb|CR974458.2| Pig DNA sequence from clone CH242-29M17 on chromosome 17, complete
              sequence
          Length = 177939

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     ccaccgctcccctttccacc 117
              ||||||||||||||||||||
Sbjct: 105106 ccaccgctcccctttccacc 105087

>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0007P22, complete sequence
          Length = 148068

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 445   tcaacgccgactccgccgtcgccg 468
             |||||||||| |||||||||||||
Sbjct: 34947 tcaacgccgagtccgccgtcgccg 34970

>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 436     acatcgacctcaacgccgactccg 459
               |||||||||||||||||| |||||
Sbjct: 5380950 acatcgacctcaacgccgcctccg 5380973

>gb|AC146469.23| Pan troglodytes clone rp43-45g24, complete sequence
          Length = 191684

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    ctctaattaattggcttgcc 50
             ||||||||||||||||||||
Sbjct: 19779 ctctaattaattggcttgcc 19760

>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 383     cgccggccgcggctcggtggccgggggg 410
               ||||||||||||||||| ||| ||||||
Sbjct: 3785988 cgccggccgcggctcggaggctgggggg 3785961

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 445      tcaacgccgactccgccgtcgccg 468
                |||||||||| |||||||||||||
Sbjct: 22417869 tcaacgccgagtccgccgtcgccg 22417846

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 34      taattaattggcttgcccat 53
               ||||||||||||||||||||
Sbjct: 6404812 taattaattggcttgcccat 6404793

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 443     cctcaacgccgactccgccg 462
               ||||||||||||||||||||
Sbjct: 1439724 cctcaacgccgactccgccg 1439743

>dbj|AP003963.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1779_B07
          Length = 151427

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    taattaattggcttgcccat 53
             ||||||||||||||||||||
Sbjct: 61379 taattaattggcttgcccat 61360

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 381     tccgccggccgcggctcggtggcc 404
               ||||||||||| ||||||||||||
Sbjct: 3871536 tccgccggccggggctcggtggcc 3871513

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 445      tcaacgccgactccgccgtcgccg 468
                |||||||||| |||||||||||||
Sbjct: 22727780 tcaacgccgagtccgccgtcgccg 22727757


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,199,824
Number of Sequences: 3902068
Number of extensions: 2199824
Number of successful extensions: 48766
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47998
Number of HSP's gapped (non-prelim): 768
length of query: 471
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 449
effective length of database: 17,147,199,772
effective search space: 7699092697628
effective search space used: 7699092697628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)