>NUGC_ADICA (Q85FL7) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 170

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = +1

Query: 52  FGYLSTMALGNDSPASYIRMVHHLIEKCMTFGMSMEECMEALSKRADVQPVVTSTVWKEL 231
           F YL +    + +P   +  V+HL +         E C++    R + Q      VWK  
Sbjct: 60  FNYLRSQCAYDATPGGSLVSVYHLTQMQDQSDQPEEICVKVFVSRTNPQIPSVYWVWKSA 119

Query: 232 EKENKEFFD 258
           E + +E +D
Sbjct: 120 EFQERESYD 128

>KPR1_YEAST (P32895) Ribose-phosphate pyrophosphokinase 1 (EC 2.7.6.1)|
           (Phosphoribosyl pyrophosphate synthetase 1)
          Length = 427

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
 Frame = +1

Query: 85  DSPASYIRMVHHLIEKC--------MTFGMSMEECMEALSKRADVQPVVTSTVW 222
           D P S+I    HL++ C         T G+   +C+E L K   +  +V +  +
Sbjct: 329 DRPGSFISAAEHLVQNCGAKKVYVVATHGIFTGDCLEELEKSDAIDTIVVTNTY 382

>NUGC_MESVI (Q9MUR1) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 174

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 52  FGYLSTMALGNDSPASYIRMVHHLIEKCMTFGMSMEECMEALSKRADVQPVVTST--VWK 225
           F YL +    + SP   +  V+HL +         E C++    R   +P++ S   +WK
Sbjct: 64  FNYLRSQCAYDVSPGGDLASVYHLTKVDDNADQPQEVCIKVFVPR--TKPIIPSVFWIWK 121

Query: 226 ELEKENKEFFDRY 264
             + + +E +D +
Sbjct: 122 TADFQERESYDMF 134

>FX4L4_HUMAN (Q8WXT5) Forkhead box protein D4-like 4 (Forkhead box protein D4B)|
           (Myeloid factor-gamma)
          Length = 416

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 186 ALGQRLHALLHAHPERHALLNQMVHHA 106
           A G+R +ALLH HP R+ LL+  V+ A
Sbjct: 254 APGRRPYALLHPHPLRYLLLSARVYAA 280

>NUGC_ARATH (P56754) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain J)
           (NADH-plastoquinone oxidoreductase subunit J)
          Length = 158

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 14/69 (20%), Positives = 31/69 (44%)
 Frame = +1

Query: 52  FGYLSTMALGNDSPASYIRMVHHLIEKCMTFGMSMEECMEALSKRADVQPVVTSTVWKEL 231
           + YL +    + +P   +  V+HL         + E C++  + R++ +      VWK  
Sbjct: 48  YNYLRSQCAYDVAPGGLLASVYHLTRIEYGVNQAEEVCIKVFTHRSNPRIPSVFWVWKST 107

Query: 232 EKENKEFFD 258
           + + +E +D
Sbjct: 108 DFQERESYD 116

>CLPB_STRMU (Q8DTC7) Chaperone clpB|
          Length = 860

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 64  STMALGNDSPASYIRMVHHLIEKCMTFGMSMEECMEALSK-RADVQPVVTSTVWKE 228
           + +AL N+  A Y+R+    I KC        + M AL K R D Q ++  TV +E
Sbjct: 484 ANLALENNQVADYVRLEDEEIRKC-------HQKMTALEKERLDSQKIINVTVTRE 532

>PUR9_NEIMA (Q9JUQ8) Bifunctional purine biosynthesis protein purH [Includes:|
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)]
          Length = 530

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 87  LSGLLHPHGAPSD*EVHDVRDEHG 158
           +  ++HP G+  D EV D  DEHG
Sbjct: 494 IKAIIHPAGSMRDQEVFDAADEHG 517

>PUR9_NEIMB (Q9JZM7) Bifunctional purine biosynthesis protein purH [Includes:|
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)]
          Length = 526

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 87  LSGLLHPHGAPSD*EVHDVRDEHG 158
           +  ++HP G+  D EV D  DEHG
Sbjct: 490 IKAIIHPAGSMRDQEVFDAADEHG 513


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,850,105
Number of Sequences: 219361
Number of extensions: 1192816
Number of successful extensions: 4254
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4254
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)