ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdb21 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 491 agctcggcctcggcgcgcagatcagcatctc 521 ||||||||||||||||| ||||| ||||||| Sbjct: 2804510 agctcggcctcggcgcggagatcggcatctc 2804480
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 46.1 bits (23), Expect = 0.13 Identities = 29/31 (93%) Strand = Plus / Minus Query: 491 agctcggcctcggcgcgcagatcagcatctc 521 ||||||||||||||||| ||||| ||||||| Sbjct: 2827332 agctcggcctcggcgcggagatcggcatctc 2827302
>ref|XM_493895.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 513 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 338 tcaccatggccaccacggcggc 359 |||||||||||||||||||||| Sbjct: 366 tcaccatggccaccacggcggc 387
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 338 tcaccatggccaccacggcggc 359 |||||||||||||||||||||| Sbjct: 937575 tcaccatggccaccacggcggc 937554
>dbj|AK067943.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122C02, full insert sequence Length = 865 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 338 tcaccatggccaccacggcggc 359 |||||||||||||||||||||| Sbjct: 431 tcaccatggccaccacggcggc 452
>dbj|AP001111.1| Oryza sativa genomic DNA, chromosome 5, clone:P0699E04 Length = 175439 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 338 tcaccatggccaccacggcggc 359 |||||||||||||||||||||| Sbjct: 27972 tcaccatggccaccacggcggc 27951
>ref|NM_120061.1| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds AT4G39010 mRNA, complete cds Length = 1835 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 337 ctcaccatggccaccacggcggccgtcaacgac 369 |||||||| |||||||||||||||||| |||| Sbjct: 38 ctcaccatcaccaccacggcggccgtcaccgac 70
>gb|DQ490515.1| Emericella nidulans alpha-galactosidase (AN8138-2) mRNA, complete cds Length = 2253 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 359 ccgtcaacgacacctccgccgagaa 383 ||||||||||||||||||| ||||| Sbjct: 1289 ccgtcaacgacacctccgctgagaa 1313
>ref|XM_676315.1| Aspergillus nidulans FGSC A4 alpha-galactosidase C precursor (AN8138.2), mRNA Length = 2253 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 359 ccgtcaacgacacctccgccgagaa 383 ||||||||||||||||||| ||||| Sbjct: 1289 ccgtcaacgacacctccgctgagaa 1313
>emb|CT009641.2| Pan troglodytes chromosome X BAC PTB-007I17, complete sequence Length = 68055 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 caccaccgtgctcaccatggccacc 351 ||||||||||||||||||| ||||| Sbjct: 15362 caccaccgtgctcaccatgaccacc 15338
>emb|CR683301.2|CNS0FQ6P Tetraodon nigroviridis full-length cDNA Length = 815 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 554 agaccatggagaagaaggtga 574 ||||||||||||||||||||| Sbjct: 140 agaccatggagaagaaggtga 160
>emb|CR648095.2|CNS0EZ1H Tetraodon nigroviridis full-length cDNA Length = 1458 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 554 agaccatggagaagaaggtga 574 ||||||||||||||||||||| Sbjct: 832 agaccatggagaagaaggtga 852
>emb|CR639300.2|CNS0ES96 Tetraodon nigroviridis full-length cDNA Length = 1478 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 554 agaccatggagaagaaggtga 574 ||||||||||||||||||||| Sbjct: 841 agaccatggagaagaaggtga 861
>emb|Z93848.1|HSU35G3 Human DNA sequence from clone LL0XNC01-35G3 on chromosome X Contains the 5' end of a gene for the possible ortholog of mouse glycine receptor alpha 4 subunit (GLRA4), complete sequence Length = 39796 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 327 caccaccgtgctcaccatggccacc 351 ||||||||||||||||||| ||||| Sbjct: 857 caccaccgtgctcaccatgaccacc 833
>emb|AL589794.7| Human DNA sequence from clone RP11-564C4 on chromosome 10 Contains the 3' end of the gene for apobec-1 complementation factor (ACF) (ASP), the gene for a novel protein similar to N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 (ASAH2), the cathepsin L-like 2 (CTSLL2) pseudogene, three novel pseudogenes (KIAA1553), a novel gene, a protein geranylgeranyltransferase type I beta subunit (PGGT1B) pseudogene and a CpG island, complete sequence Length = 178899 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 553 cagaccatggagaagaaggtg 573 ||||||||||||||||||||| Sbjct: 47051 cagaccatggagaagaaggtg 47031
>emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90 Length = 198987 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 337 ctcaccatggccaccacggcggccgtcaacgac 369 |||||||| |||||||||||||||||| |||| Sbjct: 93301 ctcaccatcaccaccacggcggccgtcaccgac 93269
>emb|AL035679.1|ATF19H22 Arabidopsis thaliana DNA chromosome 4, BAC clone F19H22 (ESSA project) Length = 100469 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 337 ctcaccatggccaccacggcggccgtcaacgac 369 |||||||| |||||||||||||||||| |||| Sbjct: 55291 ctcaccatcaccaccacggcggccgtcaccgac 55259
>gb|AY059825.1| Arabidopsis thaliana putative endo-1, 4-beta-glucanase (At4g39010; F19H22.110) mRNA, complete cds Length = 1836 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 337 ctcaccatggccaccacggcggccgtcaacgac 369 |||||||| |||||||||||||||||| |||| Sbjct: 38 ctcaccatcaccaccacggcggccgtcaccgac 70
>emb|BX826717.1|CNS0A45J Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB57ZE01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1760 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 337 ctcaccatggccaccacggcggccgtcaacgac 369 |||||||| |||||||||||||||||| |||| Sbjct: 16 ctcaccatcaccaccacggcggccgtcaccgac 48
>gb|U47026.1|ALU47026 Alcaligenes latus poly(3-hydroxyalkanoate) synthesis (phaC, phaA, and phaB) genes, complete cds Length = 4674 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 217 gcggccgacacgaccatcacggcgg 241 |||||||||| |||||||||||||| Sbjct: 3072 gcggccgacatgaccatcacggcgg 3048
>emb|AL732498.15| Mouse DNA sequence from clone RP23-323E6 on chromosome 4, complete sequence Length = 145881 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 380 agaacaccaagaggctcaggc 400 ||||||||||||||||||||| Sbjct: 100956 agaacaccaagaggctcaggc 100936
>ref|XM_420183.1| PREDICTED: Gallus gallus similar to Alpha-galactosidase A precursor (Melibiase) (Alpha-D-galactoside galactohydrolase) (Alpha-D-galactosidase A) (Agalsidase alfa) (LOC422188), mRNA Length = 3972 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 caccaccgtgctcaccatggccac 350 ||||||||||||||||||| |||| Sbjct: 1467 caccaccgtgctcaccatgaccac 1490
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 ccaagctcggcctcggcgcg 507 |||||||||||||||||||| Sbjct: 1377048 ccaagctcggcctcggcgcg 1377067
>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12 Length = 286550 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 tcggcctcggcgcgcagatc 513 |||||||||||||||||||| Sbjct: 124360 tcggcctcggcgcgcagatc 124379
>ref|XM_799551.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506215.19) partial mRNA Length = 4810 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 gccaccacggcggccgtcaa 365 |||||||||||||||||||| Sbjct: 1171 gccaccacggcggccgtcaa 1190
>ref|XM_808666.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511285.4) partial mRNA Length = 1905 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 gccaccacggcggccgtcaa 365 |||||||||||||||||||| Sbjct: 1171 gccaccacggcggccgtcaa 1190
>emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 267509 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 404 tgtacgaggaggaggagatgagca 427 ||||||||||||||||||| |||| Sbjct: 89373 tgtacgaggaggaggagataagca 89350
>emb|BX323577.16| Zebrafish DNA sequence from clone CH211-277N6 in linkage group 24, complete sequence Length = 55628 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 agatccacagcatcagctac 300 |||||||||||||||||||| Sbjct: 965 agatccacagcatcagctac 946
>emb|BX323037.10| Zebrafish DNA sequence from clone DKEYP-8B6 in linkage group 24, complete sequence Length = 173818 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 agatccacagcatcagctac 300 |||||||||||||||||||| Sbjct: 172775 agatccacagcatcagctac 172756
>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome Length = 195859 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 cggggtcgggcttcaccagctgcc 211 |||||||| ||||||||||||||| Sbjct: 148327 cggggtcgagcttcaccagctgcc 148304
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 gaggaggaggagatgagcac 428 |||||||||||||||||||| Sbjct: 27981009 gaggaggaggagatgagcac 27980990
>gb|AF228035.1|AF228035 Tupaia herpesvirus viral terminase (VTER), T94 protein (T94), T93 protein (T93), T92 protein (T92), T90 protein (T90), and T91 protein (T91) genes, complete cds Length = 7221 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 188 cggggtcgggcttcaccagctgcc 211 |||||||| ||||||||||||||| Sbjct: 1623 cggggtcgagcttcaccagctgcc 1646
>gb|AC007463.3| Homo sapiens BAC clone RP11-244L12 from 2, complete sequence Length = 166892 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 470 ccattagggcagggttccccaagc 493 |||||||||||||| ||||||||| Sbjct: 34339 ccattagggcaggggtccccaagc 34316
>gb|AF373806.1| Sinorhizobium meliloti GTP cyclohydrolase/3,4-dihydroxy-2-butanone 4-phosphate synthase (ribA) gene, complete cds Length = 1426 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 tcggcctcggcgcgcagatc 513 |||||||||||||||||||| Sbjct: 1079 tcggcctcggcgcgcagatc 1098
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 tcggcctcggcgcgcagatc 513 |||||||||||||||||||| Sbjct: 6166130 tcggcctcggcgcgcagatc 6166149
>dbj|AP004255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1212_A08 Length = 119304 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 gaggaggaggagatgagcac 428 |||||||||||||||||||| Sbjct: 24671 gaggaggaggagatgagcac 24652
>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_G04 Length = 124666 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 gaggaggaggagatgagcac 428 |||||||||||||||||||| Sbjct: 108461 gaggaggaggagatgagcac 108442
>ref|XM_317857.2| Anopheles gambiae str. PEST ENSANGP00000014192 (ENSANGG00000011703), partial mRNA Length = 1299 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 acgaggaggaggagatgagc 426 |||||||||||||||||||| Sbjct: 845 acgaggaggaggagatgagc 864
>ref|XM_310816.2| Anopheles gambiae str. PEST ENSANGP00000008011 (ENSANGG00000006038), partial mRNA Length = 3390 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 290 gcatcagctacaggctcgacgagg 313 |||||||||||| ||||||||||| Sbjct: 1829 gcatcagctacacgctcgacgagg 1852
>dbj|AK070960.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023068B22, full insert sequence Length = 1485 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 gaggaggaggagatgagcac 428 |||||||||||||||||||| Sbjct: 235 gaggaggaggagatgagcac 216
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 446 agctcaagctcggctacaattcca 469 ||||||||||||||| |||||||| Sbjct: 4568064 agctcaagctcggcttcaattcca 4568087
>gb|AF006190.1|AF006190 Heliothis virescens GABA-gated chloride channel isoform a1 mRNA, partial cds Length = 669 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 caccaccgtgctcaccatggccac 350 ||||||||||||||||||| |||| Sbjct: 475 caccaccgtgctcaccatgaccac 498 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,563,052 Number of Sequences: 3902068 Number of extensions: 4563052 Number of successful extensions: 88451 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87986 Number of HSP's gapped (non-prelim): 465 length of query: 590 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 567 effective length of database: 17,143,297,704 effective search space: 9720249798168 effective search space used: 9720249798168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
