ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdb18 |
|---|---|
| Clone Library Name | barley_pub |
>CHM4A_HUMAN (Q9BY43) Charged multivesicular body protein 4a| (Chromatin-modifying protein 4a) (CHMP4a) (Vacuolar protein sorting 7-1) (SNF7-1) (hSnf-1) (SNF7 homolog associated with Alix-2) Length = 222 Score = 42.4 bits (98), Expect = 3e-04 Identities = 26/74 (35%), Positives = 37/74 (50%) Frame = +1 Query: 64 RLFGKPKEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNKRAAIQ 243 RLFGK K++ + KL ET + AK++ KNKRAA+Q Sbjct: 6 RLFGKGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQTAKKYG-TKNKRAALQ 64 Query: 244 SLKRKKLYEQXIEQ 285 +L+RKK +EQ + Q Sbjct: 65 ALRRKKRFEQQLAQ 78
>CHM4B_BRARE (Q7ZVC4) Charged multivesicular body protein 4b| (Chromatin-modifying protein 4b) (CHMP4b) Length = 220 Score = 40.4 bits (93), Expect = 0.001 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Frame = +1 Query: 52 TMFNRLFGKP-KEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNK 228 ++F ++FG K +A + +L ET +M AK+ + KNK Sbjct: 2 SLFGKMFGSGGKGGKSASPQEAIQRLRETEEMLTKKQEFLEKKIEQELVTAKK-NGTKNK 60 Query: 229 RAAIQSLKRKKLYEQXIEQL 288 RAA+Q+LKRKK YE+ + Q+ Sbjct: 61 RAALQALKRKKRYEKQLAQI 80
>CHM4B_MOUSE (Q9D8B3) Charged multivesicular body protein 4b| (Chromatin-modifying protein 4b) (CHMP4b) Length = 224 Score = 39.7 bits (91), Expect = 0.002 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 3/82 (3%) Frame = +1 Query: 52 TMFNRLFGKPKEQANAGALA---TLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAK 222 ++F +LFG +A G + +L +T +M AK+ K Sbjct: 2 SVFGKLFGAGGGKAGKGGPTPQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TK 60 Query: 223 NKRAAIQSLKRKKLYEQXIEQL 288 NKRAA+Q+LKRKK YE+ + Q+ Sbjct: 61 NKRAALQALKRKKRYEKQLAQI 82
>CHM4B_HUMAN (Q9H444) Charged multivesicular body protein 4b| (Chromatin-modifying protein 4b) (CHMP4b) (Vacuolar protein sorting 7-2) (SNF7-2) (hSnf7-2) (SNF7 homolog associated with Alix 1) (hVps32) Length = 224 Score = 39.7 bits (91), Expect = 0.002 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 3/82 (3%) Frame = +1 Query: 52 TMFNRLFGKPKEQANAGALA---TLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAK 222 ++F +LFG +A G + +L +T +M AK+ K Sbjct: 2 SVFGKLFGAGGGKAGKGGPTPQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TK 60 Query: 223 NKRAAIQSLKRKKLYEQXIEQL 288 NKRAA+Q+LKRKK YE+ + Q+ Sbjct: 61 NKRAALQALKRKKRYEKQLAQI 82
>CHM4C_BRARE (Q6IQ73) Charged multivesicular body protein 4c| (Chromatin-modifying protein 4c) (CHMP4c) Length = 224 Score = 37.7 bits (86), Expect = 0.008 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Frame = +1 Query: 52 TMFNRLFGKP-KEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNK 228 ++F +LFG K + KL ET +M AK+ + KNK Sbjct: 2 SVFGKLFGGGGKGGKGPTPQEAIQKLRETEEMLAKKQDFLEKKIDAELLIAKK-NGTKNK 60 Query: 229 RAAIQSLKRKKLYEQXIEQL 288 RAA+Q+LKRKK YE+ + Q+ Sbjct: 61 RAALQALKRKKRYEKQLAQI 80
>CHM4B_XENTR (Q6GL11) Charged multivesicular body protein 4b| (Chromatin-modifying protein 4b) (CHMP4b) Length = 222 Score = 37.0 bits (84), Expect = 0.013 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Frame = +1 Query: 52 TMFNRLFGKPKEQANAGA-LATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNK 228 ++ +LFG + A + + KL +T +M AK+ KNK Sbjct: 2 SLIGKLFGTGGKGAKGPSPQEAIQKLRDTEEMLTKKQEFLEKKIEQELVTAKKHG-TKNK 60 Query: 229 RAAIQSLKRKKLYEQXIEQL 288 RAA+Q+LKRKK YE+ + Q+ Sbjct: 61 RAALQALKRKKRYEKQLAQI 80
>CHM4B_XENLA (Q5XGW6) Charged multivesicular body protein 4b| (Chromatin-modifying protein 4b) (CHMP4b) Length = 222 Score = 37.0 bits (84), Expect = 0.013 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Frame = +1 Query: 52 TMFNRLFGKPKEQANAGA-LATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNK 228 ++ +LFG + A + + KL +T +M AK+ KNK Sbjct: 2 SLIGKLFGTGGKGAKGPSPQEAIQKLRDTEEMLAKKQEFLEKKIEQELVTAKKHG-TKNK 60 Query: 229 RAAIQSLKRKKLYEQXIEQL 288 RAA+Q+LKRKK YE+ + Q+ Sbjct: 61 RAALQALKRKKRYEKQLAQI 80
>CHM4C_HUMAN (Q96CF2) Charged multivesicular body protein 4c| (Chromatin-modifying protein 4c) (CHMP4c) (Vacuolar protein sorting 7-3) (SNF7-3) (hSnf7-3) (SNF7 homolog associated with Alix 3) Length = 233 Score = 35.0 bits (79), Expect = 0.049 Identities = 23/72 (31%), Positives = 34/72 (47%) Frame = +1 Query: 73 GKPKEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNKRAAIQSLK 252 G K +A L +L ET +M AK+ +NKRAA+Q+LK Sbjct: 12 GSSKSRAAPSPQEALVRLRETEEMLGKKQEYLENRIQREIALAKKHG-TQNKRAALQALK 70 Query: 253 RKKLYEQXIEQL 288 RKK +E+ + Q+ Sbjct: 71 RKKRFEKQLTQI 82
>CHM4B_CHICK (Q5ZHP5) Charged multivesicular body protein 4b| (Chromatin-modifying protein 4b) (CHMP4b) Length = 227 Score = 35.0 bits (79), Expect = 0.049 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = +1 Query: 220 KNKRAAIQSLKRKKLYEQXIEQL 288 KNKRAA+Q+LKRKK YE+ + Q+ Sbjct: 62 KNKRAALQALKRKKRYEKQLAQI 84
>CHM4C_XENLA (Q6GNN8) Charged multivesicular body protein 4c| (Chromatin-modifying protein 4c) (CHMP4c) Length = 227 Score = 34.7 bits (78), Expect = 0.064 Identities = 23/69 (33%), Positives = 32/69 (46%) Frame = +1 Query: 82 KEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNKRAAIQSLKRKK 261 K + A L KL ET +M AK+ KNKRAA+Q+LK+KK Sbjct: 19 KNRKGPSAQEALFKLRETEEMLTKKQEYLEKKIELELATAKKHG-TKNKRAALQALKKKK 77 Query: 262 LYEQXIEQL 288 E+ + Q+ Sbjct: 78 RLEKQLAQI 86
>CHM4C_MOUSE (Q9D7F7) Charged multivesicular body protein 4c| (Chromatin-modifying protein 4c) (CHMP4c) Length = 232 Score = 34.3 bits (77), Expect = 0.084 Identities = 22/69 (31%), Positives = 35/69 (50%) Frame = +1 Query: 82 KEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNKRAAIQSLKRKK 261 + +A A L +L ET +M AK+ ++NKRAA+Q+LKRKK Sbjct: 15 RARAAPSAQEALARLRETEEMLAKKQEYLENRIQRELALAKKHG-SQNKRAALQALKRKK 73 Query: 262 LYEQXIEQL 288 +E+ + Q+ Sbjct: 74 RFEKQLTQV 82
>CHM4C_RAT (Q569C1) Charged multivesicular body protein 4c| (Chromatin-modifying protein 4c) (CHMP4c) Length = 232 Score = 32.3 bits (72), Expect = 0.32 Identities = 13/24 (54%), Positives = 21/24 (87%) Frame = +1 Query: 217 AKNKRAAIQSLKRKKLYEQXIEQL 288 ++NKRAA+Q+LKRKK +E+ + Q+ Sbjct: 59 SQNKRAALQALKRKKRFEKQLTQI 82
>CG301_HUMAN (P59074) Protein CGI-301| Length = 171 Score = 32.3 bits (72), Expect = 0.32 Identities = 14/23 (60%), Positives = 19/23 (82%) Frame = +1 Query: 220 KNKRAAIQSLKRKKLYEQXIEQL 288 KNK AA+Q+LKRKK YE+ + Q+ Sbjct: 20 KNKPAALQALKRKKRYEKQLAQI 42
>SNF7_KLULA (Q6CJL0) Vacuolar sorting protein SNF7 (Vacuolar protein| sorting-associated protein VPS32) Length = 232 Score = 31.2 bits (69), Expect = 0.71 Identities = 22/78 (28%), Positives = 34/78 (43%) Frame = +1 Query: 55 MFNRLFGKPKEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNKRA 234 M+ FG K+Q A +D L E + + AK+ ++ NK Sbjct: 1 MWGYFFGTSKQQKELPKKAIVD-LREHIQLLNKKQAHLQTQIDQQQQLAKKSLQSGNKNN 59 Query: 235 AIQSLKRKKLYEQXIEQL 288 A LK+KKLYE +++L Sbjct: 60 AKTYLKKKKLYESQLDKL 77 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,782,794 Number of Sequences: 219361 Number of extensions: 515070 Number of successful extensions: 1082 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1071 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1082 length of database: 80,573,946 effective HSP length: 71 effective length of database: 64,999,315 effective search space used: 1559983560 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
