ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basdb18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017005.1| Zea mays clone EK07D2310A10.c mRNA sequence 246 3e-62
2gb|BT016724.1| Zea mays clone Contig557 mRNA sequence 246 3e-62
3ref|XM_506643.1| PREDICTED Oryza sativa (japonica cultivar-group... 230 2e-57
4dbj|AK065728.1| Oryza sativa (japonica cultivar-group) cDNA clon... 230 2e-57
5dbj|AK061983.1| Oryza sativa (japonica cultivar-group) cDNA clon... 180 2e-42
6dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 115 8e-23
7dbj|AP005829.3| Oryza sativa (japonica cultivar-group) genomic D... 115 8e-23
8gb|BT013152.1| Lycopersicon esculentum clone 134156F, mRNA sequence 56 6e-05
9dbj|AK070667.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.016
10dbj|AK060097.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.016
11gb|AY106783.1| Zea mays PCO103251 mRNA sequence 46 0.061
12dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.24
13dbj|AK070935.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.24
14gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.24
15emb|AL732648.3|CNS08C9N Oryza sativa chromosome 12, . BAC OSJNBb... 44 0.24
16gb|AC170188.2| Mus musculus BAC clone RP24-195M20 from chromosom... 42 0.96
17gb|BC019183.1| Mus musculus microtubule-associated protein 1 B, ... 42 0.96
18emb|Z82271.1|CEF54E12 Caenorhabditis elegans Cosmid F54E12, comp... 42 0.96
19gb|AC136970.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.96
20gb|AC131888.1| Homo sapiens chromosome 16 clone RP11-626G3, comp... 42 0.96
21ref|NM_008634.1| Mus musculus microtubule-associated protein 1 B... 42 0.96
22dbj|AK143169.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 42 0.96
23dbj|AK157749.1| Mus musculus 9.5 days embryo parthenogenote cDNA... 42 0.96
24gb|BC037105.1| Mus musculus microtubule-associated protein 1 B, ... 42 0.96
25dbj|AK038690.1| Mus musculus adult male hypothalamus cDNA, RIKEN... 42 0.96
26gb|BC078457.1| Mus musculus microtubule-associated protein 1 B, ... 42 0.96
27gb|BC052016.1| Mus musculus microtubule-associated protein 1 B, ... 42 0.96
28gb|BC046287.1| Mus musculus microtubule-associated protein 1 B, ... 42 0.96
29dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.96
30emb|CT025832.1| Acinetobacter baumannii str. AYE. Genomics of Mu... 42 0.96
31gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.96
32emb|BX000506.4|CNS08CDW Oryza sativa chromosome 12, . BAC OJ1311... 42 0.96
33gb|AC139381.4| Mus musculus BAC clone RP23-171D1 from 13, comple... 42 0.96
34emb|X51396.1|MMMAP1B Mus musculus mRNA for microtubule-associate... 42 0.96
35gb|AC153380.1| Mus musculus BAC RP23-256G5 (Roswell Park Cancer... 40 3.8
36gb|AC114621.8| Mus musculus chromosome 3, clone RP24-93M7, compl... 40 3.8
37gb|AC102361.13| Mus musculus chromosome 18, clone RP23-37I2, com... 40 3.8
38gb|AY465182.1| Nematostella vectensis tropomyosin mRNA, complete... 40 3.8
39gb|AC163999.3| Mus musculus chromosome 15, clone RP24-387E19, co... 40 3.8
40gb|AY954921.1| Mythimna unipuncta farnesyl diphosphate synthase ... 40 3.8
41dbj|AK001582.1| Homo sapiens cDNA FLJ10720 fis, clone NT2RP3001116 40 3.8
42gb|AC079464.5| Homo sapiens chromosome 5 clone CTB-12O2, complet... 40 3.8
43gb|AC067793.9| Homo sapiens chromosome 15, clone RP11-552D14, co... 40 3.8
44gb|AC008743.9| Homo sapiens chromosome 19 clone CTD-2560K21, com... 40 3.8
45gb|AC108521.1| Caenorhabditis briggsae cosmid CB004G08, complete... 40 3.8
46gb|AC024288.9| Homo sapiens, clone RP11-23B5, complete sequence 40 3.8
47gb|AC149502.2| Xenopus tropicalis clone CH216-11H14, complete se... 40 3.8
48gb|AC048380.12| Homo sapiens chromosome 18, clone RP11-426J5, co... 40 3.8
49gb|AC131338.4| Mus musculus BAC clone RP23-29O10 from 18, comple... 40 3.8
50dbj|AP001972.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 3.8
51emb|AL591544.30| Mouse DNA sequence from clone RP23-386D6 on chr... 40 3.8 
>gb|BT017005.1| Zea mays clone EK07D2310A10.c mRNA sequence
          Length = 1053

 Score =  246 bits (124), Expect = 3e-62
 Identities = 207/235 (88%)
 Strand = Plus / Plus

                                                                       
Query: 53  ccatgttcaacaggttatttgggaagcccaaggagcaggctaatgccggcgcgctggcca 112
           |||||||||| ||| | || ||||||||||||||||||||  |  ||   ||  ||||||
Sbjct: 148 ccatgttcaataggatcttcgggaagcccaaggagcaggccgactccaatgctttggcca 207

                                                                       
Query: 113 ctttggacaagttaaacgagactcttgatatgctggagaagaaagagaaagtgttagaga 172
           || ||||||||||||| ||||| ||||||||||||||||||||||| || ||| | ||||
Sbjct: 208 ctctggacaagttaaatgagacacttgatatgctggagaagaaagaaaaggtgctggaga 267

                                                                       
Query: 173 aaaaagcaggtgctgagcttgagagggccaaggagttctcaaaagcaaagaataaaagag 232
           ||||||||   |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 268 aaaaagcaaacgctgagcttgagagagccaaggagttctcgaaagcaaagaataaaagag 327

                                                                  
Query: 233 cggctatccaatcattgaagaggaaaaaactttatgagcagcnaattgagcagct 287
           ||||||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct: 328 cggctatccaatccttgaagaggaaaaaactttatgagcaacaaattgagcagct 382
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>gb|BT016724.1| Zea mays clone Contig557 mRNA sequence
          Length = 833

 Score =  246 bits (124), Expect = 3e-62
 Identities = 207/235 (88%)
 Strand = Plus / Plus

                                                                       
Query: 53  ccatgttcaacaggttatttgggaagcccaaggagcaggctaatgccggcgcgctggcca 112
           |||||||||||||| | || |||||||||||||||||||| ||  |  | ||  ||||||
Sbjct: 327 ccatgttcaacaggatcttcgggaagcccaaggagcaggccaactctagtgccttggcca 386

                                                                       
Query: 113 ctttggacaagttaaacgagactcttgatatgctggagaagaaagagaaagtgttagaga 172
           |  | ||||||||||| |||||||||||||||||||||||||||||||| ||| | || |
Sbjct: 387 cactcgacaagttaaatgagactcttgatatgctggagaagaaagagaaggtgctggaca 446

                                                                       
Query: 173 aaaaagcaggtgctgagcttgagagggccaaggagttctcaaaagcaaagaataaaagag 232
           |||||||||  |||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct: 447 aaaaagcagccgctgagcttgagagagccaaggagttctccaaagctaagaataaaagag 506

                                                                  
Query: 233 cggctatccaatcattgaagaggaaaaaactttatgagcagcnaattgagcagct 287
           ||||||||||||| ||||||||||||||||||||||| || | ||||||||||||
Sbjct: 507 cggctatccaatccttgaagaggaaaaaactttatgaacaacaaattgagcagct 561
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>ref|XM_506643.1| PREDICTED Oryza sativa (japonica cultivar-group), B1008E06.13
           patrial mRNA
          Length = 1223

 Score =  230 bits (116), Expect = 2e-57
 Identities = 205/235 (87%)
 Strand = Plus / Plus

                                                                       
Query: 53  ccatgttcaacaggttatttgggaagcccaaggagcaggctaatgccggcgcgctggcca 112
           |||||||||||||| | ||||| ||||||||||||||||| |||||  | ||| ||||||
Sbjct: 238 ccatgttcaacaggctctttggtaagcccaaggagcaggccaatgctagtgcgttggcca 297

                                                                       
Query: 113 ctttggacaagttaaacgagactcttgatatgctggagaagaaagagaaagtgttagaga 172
           |  | || |||||||| ||||| ||||| |||||||||||||| |||||||| |||||||
Sbjct: 298 cgcttgataagttaaatgagacccttgacatgctggagaagaaggagaaagtcttagaga 357

                                                                       
Query: 173 aaaaagcaggtgctgagcttgagagggccaaggagttctcaaaagcaaagaataaaagag 232
           |||| ||||  || || || |||||||| |||||||||||||||||||||||||||||||
Sbjct: 358 aaaaggcagccgcagaactggagagggctaaggagttctcaaaagcaaagaataaaagag 417

                                                                  
Query: 233 cggctatccaatcattgaagaggaaaaaactttatgagcagcnaattgagcagct 287
           ||||||||||||| |||||||| ||||| |||||||| || | ||||||||||||
Sbjct: 418 cggctatccaatccttgaagagaaaaaagctttatgaacaacaaattgagcagct 472
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>dbj|AK065728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036O11, full
           insert sequence
          Length = 1223

 Score =  230 bits (116), Expect = 2e-57
 Identities = 205/235 (87%)
 Strand = Plus / Plus

                                                                       
Query: 53  ccatgttcaacaggttatttgggaagcccaaggagcaggctaatgccggcgcgctggcca 112
           |||||||||||||| | ||||| ||||||||||||||||| |||||  | ||| ||||||
Sbjct: 238 ccatgttcaacaggctctttggtaagcccaaggagcaggccaatgctagtgcgttggcca 297

                                                                       
Query: 113 ctttggacaagttaaacgagactcttgatatgctggagaagaaagagaaagtgttagaga 172
           |  | || |||||||| ||||| ||||| |||||||||||||| |||||||| |||||||
Sbjct: 298 cgcttgataagttaaatgagacccttgacatgctggagaagaaggagaaagtcttagaga 357

                                                                       
Query: 173 aaaaagcaggtgctgagcttgagagggccaaggagttctcaaaagcaaagaataaaagag 232
           |||| ||||  || || || |||||||| |||||||||||||||||||||||||||||||
Sbjct: 358 aaaaggcagccgcagaactggagagggctaaggagttctcaaaagcaaagaataaaagag 417

                                                                  
Query: 233 cggctatccaatcattgaagaggaaaaaactttatgagcagcnaattgagcagct 287
           ||||||||||||| |||||||| ||||| |||||||| || | ||||||||||||
Sbjct: 418 cggctatccaatccttgaagagaaaaaagctttatgaacaacaaattgagcagct 472
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>dbj|AK061983.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-A12, full
           insert sequence
          Length = 918

 Score =  180 bits (91), Expect = 2e-42
 Identities = 141/158 (89%)
 Strand = Plus / Plus

                                                                       
Query: 130 gagactcttgatatgctggagaagaaagagaaagtgttagagaaaaaagcaggtgctgag 189
           ||||| ||||| |||||||||||||| |||||||| ||||||||||| ||||  || || 
Sbjct: 3   gagacccttgacatgctggagaagaaggagaaagtcttagagaaaaaggcagccgcagaa 62

                                                                       
Query: 190 cttgagagggccaaggagttctcaaaagcaaagaataaaagagcggctatccaatcattg 249
           || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 63  ctggagagggctaaggagttctcaaaagcaaagaataaaagagcggctatccaatccttg 122

                                                 
Query: 250 aagaggaaaaaactttatgagcagcnaattgagcagct 287
           ||||| ||||| |||||||| || | ||||||||||||
Sbjct: 123 aagagaaaaaagctttatgaacaacaaattgagcagct 160
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  115 bits (58), Expect = 8e-23
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                           
Query: 131     agactcttgatatgctggagaagaaagagaaagtgttagagaaaaaagcaggtgctgagc 190
               |||| ||||| |||||||||||||| |||||||| ||||||||||| ||||  || || |
Sbjct: 5049975 agacccttgacatgctggagaagaaggagaaagtcttagagaaaaaggcagccgcagaac 5050034

                                                         
Query: 191     ttgagagggccaaggagttctcaaaagcaaagaataaaagag 232
               | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 5050035 tggagagggctaaggagttctcaaaagcaaagaataaaagag 5050076



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                        
Query: 231     agcggctatccaatcattgaagaggaaaaaactttatgagcagcnaattgagcagct 287
               ||||||||||||||| |||||||| ||||| |||||||| || | ||||||||||||
Sbjct: 5050226 agcggctatccaatccttgaagagaaaaaagctttatgaacaacaaattgagcagct 5050282



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                             
Query: 53      ccatgttcaacaggttatttgggaagcccaaggagcaggctaatgc 98
               |||||||||||||| | ||||| ||||||||||||||||| |||||
Sbjct: 5049712 ccatgttcaacaggctctttggtaagcccaaggagcaggccaatgc 5049757
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>dbj|AP005829.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1008E06
          Length = 170228

 Score =  115 bits (58), Expect = 8e-23
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                         
Query: 131   agactcttgatatgctggagaagaaagagaaagtgttagagaaaaaagcaggtgctgagc 190
             |||| ||||| |||||||||||||| |||||||| ||||||||||| ||||  || || |
Sbjct: 52092 agacccttgacatgctggagaagaaggagaaagtcttagagaaaaaggcagccgcagaac 52151

                                                       
Query: 191   ttgagagggccaaggagttctcaaaagcaaagaataaaagag 232
             | |||||||| |||||||||||||||||||||||||||||||
Sbjct: 52152 tggagagggctaaggagttctcaaaagcaaagaataaaagag 52193



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                      
Query: 231   agcggctatccaatcattgaagaggaaaaaactttatgagcagcnaattgagcagct 287
             ||||||||||||||| |||||||| ||||| |||||||| || | ||||||||||||
Sbjct: 52343 agcggctatccaatccttgaagagaaaaaagctttatgaacaacaaattgagcagct 52399



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                           
Query: 53    ccatgttcaacaggttatttgggaagcccaaggagcaggctaatgc 98
             |||||||||||||| | ||||| ||||||||||||||||| |||||
Sbjct: 51829 ccatgttcaacaggctctttggtaagcccaaggagcaggccaatgc 51874
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>gb|BT013152.1| Lycopersicon esculentum clone 134156F, mRNA sequence
          Length = 1035

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 118 gacaagttaaacgagactcttgatatgctggagaagaaagagaa 161
           ||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct: 158 gacaagttaaacgagactcttgagatgcttgagaaaaaggagaa 201
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>dbj|AK070667.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056L17, full
           insert sequence
          Length = 1366

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 125/159 (78%)
 Strand = Plus / Plus

                                                                       
Query: 129 cgagactcttgatatgctggagaagaaagagaaagtgttagagaaaaaagcaggtgctga 188
           |||||||||||| |||||||| |||||||| ||  || ||| ||| |||||   |  |||
Sbjct: 305 cgagactcttgaaatgctggaaaagaaagaaaatttgctagtgaagaaagcgaatcttga 364

                                                                       
Query: 189 gcttgagagggccaaggagttctcaaaagcaaagaataaaagagcggctatccaatcatt 248
           | |||||| |||||||   ||| | ||||| |||||||||||||| || || ||||  ||
Sbjct: 365 ggttgagaaggccaagaccttcactaaagcgaagaataaaagagctgcaatacaatgctt 424

                                                  
Query: 249 gaagaggaaaaaactttatgagcagcnaattgagcagct 287
            |||||||| | | | |||||||| |  |||||||||||
Sbjct: 425 aaagaggaagagattatatgagcaacagattgagcagct 463
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>dbj|AK060097.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-G05, full
           insert sequence
          Length = 1139

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 125/159 (78%)
 Strand = Plus / Plus

                                                                       
Query: 129 cgagactcttgatatgctggagaagaaagagaaagtgttagagaaaaaagcaggtgctga 188
           |||||||||||| |||||||| |||||||| ||  || ||| ||| |||||   |  |||
Sbjct: 322 cgagactcttgaaatgctggaaaagaaagaaaatttgctagtgaagaaagcgaatcttga 381

                                                                       
Query: 189 gcttgagagggccaaggagttctcaaaagcaaagaataaaagagcggctatccaatcatt 248
           | |||||| |||||||   ||| | ||||| |||||||||||||| || || ||||  ||
Sbjct: 382 ggttgagaaggccaagaccttcactaaagcgaagaataaaagagctgcaatacaatgctt 441

                                                  
Query: 249 gaagaggaaaaaactttatgagcagcnaattgagcagct 287
            |||||||| | | | |||||||| |  |||||||||||
Sbjct: 442 aaagaggaagagattatatgagcaacagattgagcagct 480
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>gb|AY106783.1| Zea mays PCO103251 mRNA sequence
          Length = 1172

 Score = 46.1 bits (23), Expect = 0.061
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                       
Query: 214 aaagcaaagaataaaagagcggctatccaatcattgaagaggaaaaaactttatgagcag 273
           ||||| |||||||||||||| || || || |  ||||||||||||| ||| || ||||| 
Sbjct: 353 aaagccaagaataaaagagctgcaatacagtgcttgaagaggaaaagactatacgagcaa 412

                         
Query: 274 cnaattgagcagct 287
           |  |||||||||||
Sbjct: 413 cagattgagcagct 426
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 134     ctcttgatatgctggagaagaa 155
               ||||||||||||||||||||||
Sbjct: 7321231 ctcttgatatgctggagaagaa 7321252



 Score = 42.1 bits (21), Expect = 0.96
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 131     agactcttgatatgctggagaagaaagag 159
               ||||||| || ||||||||||||||||||
Sbjct: 1013090 agactctagaaatgctggagaagaaagag 1013062
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>dbj|AK070935.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023068B07, full
           insert sequence
          Length = 967

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 130 gagactcttgatatgctggagaagaaagag 159
           |||||||| || ||||||||||||||||||
Sbjct: 271 gagactctagaaatgctggagaagaaagag 300
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 134     ctcttgatatgctggagaagaa 155
               ||||||||||||||||||||||
Sbjct: 7321110 ctcttgatatgctggagaagaa 7321131



 Score = 42.1 bits (21), Expect = 0.96
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 131     agactcttgatatgctggagaagaaagag 159
               ||||||| || ||||||||||||||||||
Sbjct: 1013090 agactctagaaatgctggagaagaaagag 1013062
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>emb|AL732648.3|CNS08C9N Oryza sativa chromosome 12, . BAC OSJNBb0020J15 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 133575

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 134   ctcttgatatgctggagaagaa 155
             ||||||||||||||||||||||
Sbjct: 36241 ctcttgatatgctggagaagaa 36262
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>gb|AC170188.2| Mus musculus BAC clone RP24-195M20 from chromosome 13, complete
             sequence
          Length = 165687

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 154   aaagagaaagtgttagagaaaaaag 178
             |||||||||||||||| ||||||||
Sbjct: 45765 aaagagaaagtgttagtgaaaaaag 45741
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>gb|BC019183.1| Mus musculus microtubule-associated protein 1 B, mRNA (cDNA clone
            IMAGE:5010155), containing frame-shift errors
          Length = 2219

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 154  aaagagaaagtgttagagaaaaaag 178
            |||||||||||||||| ||||||||
Sbjct: 1794 aaagagaaagtgttagtgaaaaaag 1818
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>emb|Z82271.1|CEF54E12 Caenorhabditis elegans Cosmid F54E12, complete sequence
          Length = 13877

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 146 tggagaagaaagagaaagtgt 166
           |||||||||||||||||||||
Sbjct: 173 tggagaagaaagagaaagtgt 153
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>gb|AC136970.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0074L01, complete sequence
          Length = 115339

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 131   agactcttgatatgctggagaagaaagag 159
             ||||||| || ||||||||||||||||||
Sbjct: 79340 agactctagaaatgctggagaagaaagag 79312
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>gb|AC131888.1| Homo sapiens chromosome 16 clone RP11-626G3, complete sequence
          Length = 162957

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 152   agaaagagaaagtgttagagaaaaa 176
             |||||||||||| ||||||||||||
Sbjct: 70689 agaaagagaaagagttagagaaaaa 70665
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>ref|NM_008634.1| Mus musculus microtubule-associated protein 1 B (Mtap1b), mRNA
          Length = 8818

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 154  aaagagaaagtgttagagaaaaaag 178
            |||||||||||||||| ||||||||
Sbjct: 1800 aaagagaaagtgttagtgaaaaaag 1824
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>dbj|AK143169.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
            library, clone:E130206H16 product:microtubule-associated
            protein 1 B, full insert sequence
          Length = 1759

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 154  aaagagaaagtgttagagaaaaaag 178
            |||||||||||||||| ||||||||
Sbjct: 1595 aaagagaaagtgttagtgaaaaaag 1619
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>dbj|AK157749.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
            enriched library, clone:B130017F22
            product:microtubule-associated protein 1 B, full insert
            sequence
          Length = 1849

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 154  aaagagaaagtgttagagaaaaaag 178
            |||||||||||||||| ||||||||
Sbjct: 1634 aaagagaaagtgttagtgaaaaaag 1658
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>gb|BC037105.1| Mus musculus microtubule-associated protein 1 B, mRNA (cDNA clone
            IMAGE:5366028), partial cds
          Length = 2133

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 154  aaagagaaagtgttagagaaaaaag 178
            |||||||||||||||| ||||||||
Sbjct: 1807 aaagagaaagtgttagtgaaaaaag 1831
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>dbj|AK038690.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length
           enriched library, clone:A230055D22
           product:microtubule-associated protein 1 B, full insert
           sequence
          Length = 1191

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 154 aaagagaaagtgttagagaaaaaag 178
           |||||||||||||||| ||||||||
Sbjct: 683 aaagagaaagtgttagtgaaaaaag 707
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>gb|BC078457.1| Mus musculus microtubule-associated protein 1 B, mRNA (cDNA clone
            IMAGE:30360897)
          Length = 2112

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 154  aaagagaaagtgttagagaaaaaag 178
            |||||||||||||||| ||||||||
Sbjct: 1788 aaagagaaagtgttagtgaaaaaag 1812
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>gb|BC052016.1| Mus musculus microtubule-associated protein 1 B, mRNA (cDNA clone
            IMAGE:6404340)
          Length = 2112

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 154  aaagagaaagtgttagagaaaaaag 178
            |||||||||||||||| ||||||||
Sbjct: 1783 aaagagaaagtgttagtgaaaaaag 1807
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>gb|BC046287.1| Mus musculus microtubule-associated protein 1 B, mRNA (cDNA clone
            IMAGE:6468810)
          Length = 2110

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 154  aaagagaaagtgttagagaaaaaag 178
            |||||||||||||||| ||||||||
Sbjct: 1783 aaagagaaagtgttagtgaaaaaag 1807
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 131     agactcttgatatgctggagaagaaagag 159
               ||||||| || ||||||||||||||||||
Sbjct: 1081058 agactctagaaatgctggagaagaaagag 1081030
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>emb|CT025832.1| Acinetobacter baumannii str. AYE. Genomics of Multi-Drug Resistance in
             Acinetobacter baumannii
          Length = 100001

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 44    gaggtgccaccatgttcaaca 64
             |||||||||||||||||||||
Sbjct: 84763 gaggtgccaccatgttcaaca 84783
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 131     agactcttgatatgctggagaagaaagag 159
               ||||||| || ||||||||||||||||||
Sbjct: 1078779 agactctagaaatgctggagaagaaagag 1078751
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>emb|BX000506.4|CNS08CDW Oryza sativa chromosome 12, . BAC OJ1311_G04 of library Monsanto from
            chromosome 12 of cultivar Nipponbare of ssp. japonica of
            Oryza sativa (rice), complete sequence
          Length = 97056

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 131  agactcttgatatgctggagaagaaagag 159
            ||||||| || ||||||||||||||||||
Sbjct: 8361 agactctagaaatgctggagaagaaagag 8333
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>gb|AC139381.4| Mus musculus BAC clone RP23-171D1 from 13, complete sequence
          Length = 242105

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 154    aaagagaaagtgttagagaaaaaag 178
              |||||||||||||||| ||||||||
Sbjct: 225690 aaagagaaagtgttagtgaaaaaag 225714
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>emb|X51396.1|MMMAP1B Mus musculus mRNA for microtubule-associated protein 1B (MAP1B gene)
          Length = 8818

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 154  aaagagaaagtgttagagaaaaaag 178
            |||||||||||||||| ||||||||
Sbjct: 1800 aaagagaaagtgttagtgaaaaaag 1824
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>gb|AC153380.1| Mus musculus  BAC RP23-256G5 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 160046

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 209   tctcaaaagcaaagaataaaagag 232
             |||||||||||||||| |||||||
Sbjct: 13899 tctcaaaagcaaagaacaaaagag 13876
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>gb|AC114621.8| Mus musculus chromosome 3, clone RP24-93M7, complete sequence
          Length = 198404

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    aaaagcaaagaataaaagag 232
              ||||||||||||||||||||
Sbjct: 163290 aaaagcaaagaataaaagag 163309
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>gb|AC102361.13| Mus musculus chromosome 18, clone RP23-37I2, complete sequence
          Length = 213628

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    tcaaaagcaaagaataaaag 230
              ||||||||||||||||||||
Sbjct: 200193 tcaaaagcaaagaataaaag 200212
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>gb|AY465182.1| Nematostella vectensis tropomyosin mRNA, complete cds
          Length = 1175

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 184 gctgagcttgagagggccaaggag 207
           ||||||||||||| ||||||||||
Sbjct: 725 gctgagcttgagaaggccaaggag 748
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>gb|AC163999.3| Mus musculus chromosome 15, clone RP24-387E19, complete sequence
          Length = 163830

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   tgatatgctggagaagaaag 157
             ||||||||||||||||||||
Sbjct: 68600 tgatatgctggagaagaaag 68581
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>gb|AY954921.1| Mythimna unipuncta farnesyl diphosphate synthase mRNA, complete cds
          Length = 1862

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 142 atgctggagaagaaagagaa 161
           ||||||||||||||||||||
Sbjct: 443 atgctggagaagaaagagaa 462
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>dbj|AK001582.1| Homo sapiens cDNA FLJ10720 fis, clone NT2RP3001116
          Length = 3591

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 154  aaagagaaagtgttagagaa 173
            ||||||||||||||||||||
Sbjct: 1666 aaagagaaagtgttagagaa 1647
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>gb|AC079464.5| Homo sapiens chromosome 5 clone CTB-12O2, complete sequence
          Length = 55687

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   aaagagaaagtgttagagaa 173
             ||||||||||||||||||||
Sbjct: 21439 aaagagaaagtgttagagaa 21420
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>gb|AC067793.9| Homo sapiens chromosome 15, clone RP11-552D14, complete sequence
          Length = 189722

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 137    ttgatatgctggagaagaaagaga 160
              ||||| ||||||||||||||||||
Sbjct: 121823 ttgatgtgctggagaagaaagaga 121800
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>gb|AC008743.9| Homo sapiens chromosome 19 clone CTD-2560K21, complete sequence
          Length = 192097

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   attgaagaggaaaaaacttt 265
             ||||||||||||||||||||
Sbjct: 20461 attgaagaggaaaaaacttt 20480
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>gb|AC108521.1| Caenorhabditis briggsae cosmid CB004G08, complete sequence
          Length = 82505

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   aagagaaagtgttagagaaa 174
             ||||||||||||||||||||
Sbjct: 36202 aagagaaagtgttagagaaa 36221
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>gb|AC024288.9| Homo sapiens, clone RP11-23B5, complete sequence
          Length = 169540

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 142  atgctggagaagaaagagaa 161
            ||||||||||||||||||||
Sbjct: 1471 atgctggagaagaaagagaa 1490
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>gb|AC149502.2| Xenopus tropicalis clone CH216-11H14, complete sequence
          Length = 196315

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 158   agaaagtgttagagaaaaaagcag 181
             ||||||||||||||||| ||||||
Sbjct: 91128 agaaagtgttagagaaagaagcag 91105
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>gb|AC048380.12| Homo sapiens chromosome 18, clone RP11-426J5, complete sequence
          Length = 224670

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    atgctggagaagaaagagaa 161
              ||||||||||||||||||||
Sbjct: 171199 atgctggagaagaaagagaa 171218
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>gb|AC131338.4| Mus musculus BAC clone RP23-29O10 from 18, complete sequence
          Length = 203229

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 211    tcaaaagcaaagaataaaag 230
              ||||||||||||||||||||
Sbjct: 169694 tcaaaagcaaagaataaaag 169675
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>dbj|AP001972.4| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2562J17, complete
             sequences
          Length = 215225

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   ggagaagaaagagaaagtgt 166
             ||||||||||||||||||||
Sbjct: 88655 ggagaagaaagagaaagtgt 88674
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>emb|AL591544.30| Mouse DNA sequence from clone RP23-386D6 on chromosome 11, complete
              sequence
          Length = 201673

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    gctggagaagaaagagaaag 163
              ||||||||||||||||||||
Sbjct: 132583 gctggagaagaaagagaaag 132602


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,558,933
Number of Sequences: 3902068
Number of extensions: 3558933
Number of successful extensions: 80869
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80642
Number of HSP's gapped (non-prelim): 227
length of query: 289
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 267
effective length of database: 17,147,199,772
effective search space: 4578302339124
effective search space used: 4578302339124
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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