ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basdb17 |
|---|---|
| Clone Library Name | barley_pub |
>CHM4B_BRARE (Q7ZVC4) Charged multivesicular body protein 4b| (Chromatin-modifying protein 4b) (CHMP4b) Length = 220 Score = 63.5 bits (153), Expect = 3e-10 Identities = 44/128 (34%), Positives = 63/128 (49%), Gaps = 1/128 (0%) Frame = +3 Query: 96 TMFNRLFGKP-KEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNK 272 ++F ++FG K +A + +L ET +M AK+ + KNK Sbjct: 2 SLFGKMFGSGGKGGKSASPQEAIQRLRETEEMLTKKQEFLEKKIEQELVTAKK-NGTKNK 60 Query: 273 RAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKA 452 RAA+Q+LKRKK YE+Q+ Q+ I Q LE A TE + + AKAMKA Sbjct: 61 RAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENAHTNTEVIKNMGYAAKAMKAAHDN 120 Query: 453 TNIDDVDK 476 +ID VD+ Sbjct: 121 MDIDKVDE 128
>CHM4B_MOUSE (Q9D8B3) Charged multivesicular body protein 4b| (Chromatin-modifying protein 4b) (CHMP4b) Length = 224 Score = 62.4 bits (150), Expect = 6e-10 Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Frame = +3 Query: 96 TMFNRLFGKPKEQANAGALA---TLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAK 266 ++F +LFG +A G + +L +T +M AK+ K Sbjct: 2 SVFGKLFGAGGGKAGKGGPTPQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TK 60 Query: 267 NKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQ 446 NKRAA+Q+LKRKK YE+Q+ Q+ I Q LE A TE + + AKAMKA Sbjct: 61 NKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAH 120 Query: 447 KATNIDDVDK 476 +ID VD+ Sbjct: 121 DNMDIDKVDE 130
>CHM4B_HUMAN (Q9H444) Charged multivesicular body protein 4b| (Chromatin-modifying protein 4b) (CHMP4b) (Vacuolar protein sorting 7-2) (SNF7-2) (hSnf7-2) (SNF7 homolog associated with Alix 1) (hVps32) Length = 224 Score = 62.4 bits (150), Expect = 6e-10 Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Frame = +3 Query: 96 TMFNRLFGKPKEQANAGALA---TLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAK 266 ++F +LFG +A G + +L +T +M AK+ K Sbjct: 2 SVFGKLFGAGGGKAGKGGPTPQEAIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG-TK 60 Query: 267 NKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQ 446 NKRAA+Q+LKRKK YE+Q+ Q+ I Q LE A TE + + AKAMKA Sbjct: 61 NKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAH 120 Query: 447 KATNIDDVDK 476 +ID VD+ Sbjct: 121 DNMDIDKVDE 130
>CHMP5_XENTR (Q5FW29) Charged multivesicular body protein 5 (Chromatin-modifying| protein 5) Length = 219 Score = 59.7 bits (143), Expect = 4e-09 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 5/128 (3%) Frame = +3 Query: 105 NRLFGKPKEQANAGAL----ATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEF-SKAKN 269 NRLFGK K + L + +D +E++D + +E SK Sbjct: 2 NRLFGKSKPKVPPSTLTDCISNVDSRSESIDKKISRLDAELVKYKDQMKKMREGPSKNMV 61 Query: 270 KRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQK 449 K+ A++ LK+K++YEQQ + L + +++ K T TVDA++ GAK MK K Sbjct: 62 KQKALRVLKQKRMYEQQRDNLNQQSFNMEQTNYAIQSLKDTKTTVDAMKVGAKEMKKAYK 121 Query: 450 ATNIDDVD 473 ID ++ Sbjct: 122 QVKIDQIE 129
>CHMP5_PONPY (Q5RBR3) Charged multivesicular body protein 5 (Chromatin-modifying| protein 5) Length = 219 Score = 59.7 bits (143), Expect = 4e-09 Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 6/129 (4%) Frame = +3 Query: 105 NRLFGKPKEQANAGALA----TLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKN- 269 NRLFGK K +A +L T+D E++D + +E AKN Sbjct: 2 NRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMRE-GPAKNM 60 Query: 270 -KRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQ 446 K+ A++ LK+K++YEQQ + L + +++ K T TVDA++ G K MK Sbjct: 61 VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 120 Query: 447 KATNIDDVD 473 K ID ++ Sbjct: 121 KQVKIDQIE 129
>CHMP5_HUMAN (Q9NZZ3) Charged multivesicular body protein 5 (Chromatin-modifying| protein 5) (Vacuolar protein sorting 60) (Vps60) (hVps60) (SNF7 domain-containing protein 2) Length = 219 Score = 59.7 bits (143), Expect = 4e-09 Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 6/129 (4%) Frame = +3 Query: 105 NRLFGKPKEQANAGALA----TLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKN- 269 NRLFGK K +A +L T+D E++D + +E AKN Sbjct: 2 NRLFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMRE-GPAKNM 60 Query: 270 -KRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQ 446 K+ A++ LK+K++YEQQ + L + +++ K T TVDA++ G K MK Sbjct: 61 VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 120 Query: 447 KATNIDDVD 473 K ID ++ Sbjct: 121 KQVKIDQIE 129
>CHM4C_BRARE (Q6IQ73) Charged multivesicular body protein 4c| (Chromatin-modifying protein 4c) (CHMP4c) Length = 224 Score = 59.3 bits (142), Expect = 5e-09 Identities = 44/127 (34%), Positives = 60/127 (47%), Gaps = 1/127 (0%) Frame = +3 Query: 96 TMFNRLFGKP-KEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNK 272 ++F +LFG K + KL ET +M AK+ + KNK Sbjct: 2 SVFGKLFGGGGKGGKGPTPQEAIQKLRETEEMLAKKQDFLEKKIDAELLIAKK-NGTKNK 60 Query: 273 RAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKA 452 RAA+Q+LKRKK YE+Q+ Q+ I Q LE A TE + + AKAMK + Sbjct: 61 RAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKTAHEN 120 Query: 453 TNIDDVD 473 +ID VD Sbjct: 121 MDIDKVD 127
>CHMP5_RAT (Q4QQV8) Charged multivesicular body protein 5 (Chromatin-modifying| protein 5) Length = 219 Score = 58.2 bits (139), Expect = 1e-08 Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 6/129 (4%) Frame = +3 Query: 105 NRLFGKPKEQANAGALA----TLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKN- 269 NR FGK K +A +L T+D E++D + +E AKN Sbjct: 2 NRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMRE-GPAKNM 60 Query: 270 -KRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQ 446 K+ A++ LK+K++YEQQ + L + +++ K T TVDA++ G K MK Sbjct: 61 VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 120 Query: 447 KATNIDDVD 473 K ID ++ Sbjct: 121 KEVKIDQIE 129
>CHMP5_MOUSE (Q9D7S9) Charged multivesicular body protein 5 (Chromatin-modifying| protein 5) (SNF7 domain-containing protein 2) Length = 219 Score = 58.2 bits (139), Expect = 1e-08 Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 6/129 (4%) Frame = +3 Query: 105 NRLFGKPKEQANAGALA----TLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKN- 269 NR FGK K +A +L T+D E++D + +E AKN Sbjct: 2 NRFFGKAKPKAPPPSLTDCIGTVDSRAESIDKKISRLDAELVKYKDQIKKMRE-GPAKNM 60 Query: 270 -KRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQ 446 K+ A++ LK+K++YEQQ + L + +++ K T TVDA++ G K MK Sbjct: 61 VKQKALRVLKQKRMYEQQRDNLAQQSFNMEQANYTIQSLKDTKTTVDAMKLGVKEMKKAY 120 Query: 447 KATNIDDVD 473 K ID ++ Sbjct: 121 KEVKIDQIE 129
>CHM4B_XENTR (Q6GL11) Charged multivesicular body protein 4b| (Chromatin-modifying protein 4b) (CHMP4b) Length = 222 Score = 58.2 bits (139), Expect = 1e-08 Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 1/128 (0%) Frame = +3 Query: 96 TMFNRLFGKPKEQANAGA-LATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNK 272 ++ +LFG + A + + KL +T +M AK+ KNK Sbjct: 2 SLIGKLFGTGGKGAKGPSPQEAIQKLRDTEEMLTKKQEFLEKKIEQELVTAKKHG-TKNK 60 Query: 273 RAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKA 452 RAA+Q+LKRKK YE+Q+ Q+ I Q LE A TE + + AKAMKA Sbjct: 61 RAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDN 120 Query: 453 TNIDDVDK 476 +I+ VD+ Sbjct: 121 MDIEKVDE 128
>CHM4B_XENLA (Q5XGW6) Charged multivesicular body protein 4b| (Chromatin-modifying protein 4b) (CHMP4b) Length = 222 Score = 58.2 bits (139), Expect = 1e-08 Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 1/128 (0%) Frame = +3 Query: 96 TMFNRLFGKPKEQANAGA-LATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNK 272 ++ +LFG + A + + KL +T +M AK+ KNK Sbjct: 2 SLIGKLFGTGGKGAKGPSPQEAIQKLRDTEEMLAKKQEFLEKKIEQELVTAKKHG-TKNK 60 Query: 273 RAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKA 452 RAA+Q+LKRKK YE+Q+ Q+ I Q LE A TE + + AKAMKA Sbjct: 61 RAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDN 120 Query: 453 TNIDDVDK 476 +I+ VD+ Sbjct: 121 MDIEKVDE 128
>CHM4A_HUMAN (Q9BY43) Charged multivesicular body protein 4a| (Chromatin-modifying protein 4a) (CHMP4a) (Vacuolar protein sorting 7-1) (SNF7-1) (hSnf-1) (SNF7 homolog associated with Alix-2) Length = 222 Score = 58.2 bits (139), Expect = 1e-08 Identities = 38/123 (30%), Positives = 58/123 (47%) Frame = +3 Query: 108 RLFGKPKEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNKRAAIQ 287 RLFGK K++ + KL ET + AK++ KNKRAA+Q Sbjct: 6 RLFGKGKKEKGPTPEEAIQKLKETEKILIKKQEFLEQKIQQELQTAKKYG-TKNKRAALQ 64 Query: 288 SLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKATNIDD 467 +L+RKK +EQQ+ Q + Q +E A E + + A++MK + +ID Sbjct: 65 ALRRKKRFEQQLAQTDGTLSTLEFQREAIENATTNAEVLRTMELAAQSMKKAYQDMDIDK 124 Query: 468 VDK 476 VD+ Sbjct: 125 VDE 127
>SNF7_KLULA (Q6CJL0) Vacuolar sorting protein SNF7 (Vacuolar protein| sorting-associated protein VPS32) Length = 232 Score = 57.8 bits (138), Expect = 1e-08 Identities = 38/125 (30%), Positives = 60/125 (48%) Frame = +3 Query: 99 MFNRLFGKPKEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNKRA 278 M+ FG K+Q A +D L E + + AK+ ++ NK Sbjct: 1 MWGYFFGTSKQQKELPKKAIVD-LREHIQLLNKKQAHLQTQIDQQQQLAKKSLQSGNKNN 59 Query: 279 AIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKATN 458 A LK+KKLYE Q+++L + + Q+ +E A ET+ A++ GA AMK + K + Sbjct: 60 AKTYLKKKKLYESQLDKLQSQIDSLDQQLYSIENANLNLETLKAMKQGASAMKNIHKGLD 119 Query: 459 IDDVD 473 +D VD Sbjct: 120 LDKVD 124
>CHM4B_CHICK (Q5ZHP5) Charged multivesicular body protein 4b| (Chromatin-modifying protein 4b) (CHMP4b) Length = 227 Score = 57.8 bits (138), Expect = 1e-08 Identities = 33/71 (46%), Positives = 42/71 (59%) Frame = +3 Query: 264 KNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAM 443 KNKRAA+Q+LKRKK YE+Q+ Q+ I Q LE A TE + + AKAMKA Sbjct: 62 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAA 121 Query: 444 QKATNIDDVDK 476 +ID VD+ Sbjct: 122 HDNMDIDKVDE 132
>SNF7_SCHPO (Q9P7F7) Vacuolar sorting protein snf7 (Vacuolar protein| sorting-associated protein vps32) Length = 222 Score = 57.0 bits (136), Expect = 2e-08 Identities = 26/70 (37%), Positives = 46/70 (65%) Frame = +3 Query: 267 NKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQ 446 NKR A+ +LKRKK++E ++ ++ + I Q+ ++ A ET+ A+R GA+AMK++Q Sbjct: 56 NKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQ 115 Query: 447 KATNIDDVDK 476 + + D VD+ Sbjct: 116 RGMDADKVDQ 125
>SNF7_CANGA (Q6FW96) Vacuolar sorting protein SNF7 (Vacuolar protein| sorting-associated protein VPS32) Length = 228 Score = 56.6 bits (135), Expect = 3e-08 Identities = 29/78 (37%), Positives = 48/78 (61%) Frame = +3 Query: 243 AKEFSKAKNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTG 422 A++F NK A +LK+KK+YE Q+ +L + + Q+ +E+A ET+ A++ G Sbjct: 49 ARKFLTRGNKTMAKNALKKKKVYEGQLVKLESQMDSLEQQLFSIESANLNLETMRAMKQG 108 Query: 423 AKAMKAMQKATNIDDVDK 476 AKAMK++ +ID VD+ Sbjct: 109 AKAMKSIHSGLDIDRVDE 126
>CG301_HUMAN (P59074) Protein CGI-301| Length = 171 Score = 54.3 bits (129), Expect = 2e-07 Identities = 31/71 (43%), Positives = 41/71 (57%) Frame = +3 Query: 264 KNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAM 443 KNK AA+Q+LKRKK YE+Q+ Q+ I Q LE A TE + + + AKA KA Sbjct: 20 KNKPAALQALKRKKRYEKQLAQIDGTLSTIEFQQQALENANTNTEVLKNMGSAAKAKKAA 79 Query: 444 QKATNIDDVDK 476 +ID VD+ Sbjct: 80 HDNMDIDKVDE 90
>CHMP5_XENLA (Q6DD52) Charged multivesicular body protein 5 (Chromatin-modifying| protein 5) Length = 219 Score = 53.9 bits (128), Expect = 2e-07 Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 5/128 (3%) Frame = +3 Query: 105 NRLFGKPKEQANAGALA----TLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEF-SKAKN 269 NR+FGK K + L +D E+++ + +E SK Sbjct: 2 NRIFGKSKPKVPPPTLTDCITNVDGRAESIEKKISRLDAELIKYKDQMKKMREGPSKNMV 61 Query: 270 KRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQK 449 K+ A++ LK+K++YEQQ + L + ++ K T TVDA++ GAK MK K Sbjct: 62 KQKALRVLKQKRMYEQQRDNLNQQSFNMEQANYTIQTLKDTKTTVDAMKVGAKEMKKAYK 121 Query: 450 ATNIDDVD 473 ID ++ Sbjct: 122 QVKIDQIE 129
>CHM4C_XENLA (Q6GNN8) Charged multivesicular body protein 4c| (Chromatin-modifying protein 4c) (CHMP4c) Length = 227 Score = 53.5 bits (127), Expect = 3e-07 Identities = 37/116 (31%), Positives = 54/116 (46%) Frame = +3 Query: 126 KEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNKRAAIQSLKRKK 305 K + A L KL ET +M AK+ KNKRAA+Q+LK+KK Sbjct: 19 KNRKGPSAQEALFKLRETEEMLTKKQEYLEKKIELELATAKKHG-TKNKRAALQALKKKK 77 Query: 306 LYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKATNIDDVD 473 E+Q+ Q+ I Q LE + TE + + AKAMKA + +++ +D Sbjct: 78 RLEKQLAQIDGTLSTIEFQREALENSHTNTEVLKNMGYAAKAMKAAHENMDLEKID 133
>CHM4C_HUMAN (Q96CF2) Charged multivesicular body protein 4c| (Chromatin-modifying protein 4c) (CHMP4c) (Vacuolar protein sorting 7-3) (SNF7-3) (hSnf7-3) (SNF7 homolog associated with Alix 3) Length = 233 Score = 52.8 bits (125), Expect = 5e-07 Identities = 36/119 (30%), Positives = 57/119 (47%) Frame = +3 Query: 117 GKPKEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNKRAAIQSLK 296 G K +A L +L ET +M AK+ +NKRAA+Q+LK Sbjct: 12 GSSKSRAAPSPQEALVRLRETEEMLGKKQEYLENRIQREIALAKKHG-TQNKRAALQALK 70 Query: 297 RKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKATNIDDVD 473 RKK +E+Q+ Q+ I Q LE + TE + + AKAMK++ + +++ +D Sbjct: 71 RKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKSVHENMDLNKID 129
>CHM4C_MOUSE (Q9D7F7) Charged multivesicular body protein 4c| (Chromatin-modifying protein 4c) (CHMP4c) Length = 232 Score = 52.4 bits (124), Expect = 6e-07 Identities = 36/116 (31%), Positives = 57/116 (49%) Frame = +3 Query: 126 KEQANAGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNKRAAIQSLKRKK 305 + +A A L +L ET +M AK+ ++NKRAA+Q+LKRKK Sbjct: 15 RARAAPSAQEALARLRETEEMLAKKQEYLENRIQRELALAKKHG-SQNKRAALQALKRKK 73 Query: 306 LYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKATNIDDVD 473 +E+Q+ Q+ I Q LE + TE + + AKAMKA+ +++ +D Sbjct: 74 RFEKQLTQVDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKAVHDNMDLNKID 129
>SNF7_YEAST (P39929) Vacuolar sorting protein SNF7 (DOA4-independent| degradation protein 1) (Vacuolar protein sorting-associated protein VPS32) Length = 240 Score = 52.0 bits (123), Expect = 8e-07 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 2/128 (1%) Frame = +3 Query: 99 MFNRLFGKPKEQANAGALAT--LDKLNETLDMXXXXXXXXXXXXXXXXXRAKEFSKAKNK 272 M++ LFG A T + +L E +++ A+ F NK Sbjct: 1 MWSSLFGWTSSNAKNKESPTKAIVRLREHINLLSKKQSHLRTQITNQENEARIFLTKGNK 60 Query: 273 RAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKA 452 A +LK+KK EQ + ++ + Q+ +E+A ET+ A++ GAKAMK + Sbjct: 61 VMAKNALKKKKTIEQLLSKVEGTMESMEQQLFSIESANLNLETMRAMQEGAKAMKTIHSG 120 Query: 453 TNIDDVDK 476 +ID VD+ Sbjct: 121 LDIDKVDE 128
>CHM4C_RAT (Q569C1) Charged multivesicular body protein 4c| (Chromatin-modifying protein 4c) (CHMP4c) Length = 232 Score = 51.2 bits (121), Expect = 1e-06 Identities = 27/71 (38%), Positives = 44/71 (61%) Frame = +3 Query: 261 AKNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKA 440 ++NKRAA+Q+LKRKK +E+Q+ Q+ I Q LE + TE + + AKAMKA Sbjct: 59 SQNKRAALQALKRKKRFEKQLTQIDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKA 118 Query: 441 MQKATNIDDVD 473 + + +++ +D Sbjct: 119 VHENMDLNKID 129
>SNF7_CANAL (Q5ABD0) Vacuolar sorting protein SNF7 (Vacuolar protein| sorting-associated protein VPS32) Length = 226 Score = 49.3 bits (116), Expect = 5e-06 Identities = 26/77 (33%), Positives = 44/77 (57%) Frame = +3 Query: 243 AKEFSKAKNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTG 422 A+++ +K A +LKRKK YE + ++ N + Q+I +E A ET+ A++ G Sbjct: 49 ARKYVSSKQTTLAKSALKRKKGYESNLLKVENQIETLETQLISIEGANLNLETMKAMKQG 108 Query: 423 AKAMKAMQKATNIDDVD 473 AKAMK + ++D V+ Sbjct: 109 AKAMKQIHGEYDVDKVE 125
>CHMP5_BRARE (Q7T339) Charged multivesicular body protein 5 (Chromatin-modifying| protein 5) Length = 220 Score = 48.1 bits (113), Expect = 1e-05 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 5/128 (3%) Frame = +3 Query: 105 NRLFGKPKEQAN----AGALATLDKLNETLDMXXXXXXXXXXXXXXXXXRAKEF-SKAKN 269 NR+FG+ K + ++ +D E++D + ++ SK Sbjct: 2 NRIFGRGKPKGPPPNLTDCISGVDSRAESVDKKIARLDAELMKYKDQMKKMRDGPSKNMV 61 Query: 270 KRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQK 449 K+ A++ LK+K++YE Q +QL + ++ K T TV+A++ GAK MK K Sbjct: 62 KQKAMRVLKQKRMYEGQRDQLMQQSFNMEQANYTIQTLKDTKTTVEAMKIGAKEMKKAYK 121 Query: 450 ATNIDDVD 473 ID ++ Sbjct: 122 NVKIDQIE 129
>VPS32_EMENI (Q5B5E0) Vacuolar sorting protein 32| Length = 242 Score = 46.2 bits (108), Expect = 4e-05 Identities = 22/70 (31%), Positives = 41/70 (58%) Frame = +3 Query: 267 NKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQ 446 NK AA +L+RKK++E+ +EQ +++ Q+ +EAA ET+ A++ AM+ + Sbjct: 56 NKNAAKAALRRKKVHEKNLEQTQAQIVQLEQQIYSIEAANINHETLAAMKAAGAAMEKIH 115 Query: 447 KATNIDDVDK 476 ++ VD+ Sbjct: 116 NGMTVEQVDE 125
>SNF7_YARLI (Q6CBS3) Vacuolar sorting protein SNF7 (Vacuolar protein| sorting-associated protein VPS32) Length = 215 Score = 45.8 bits (107), Expect = 6e-05 Identities = 28/70 (40%), Positives = 38/70 (54%) Frame = +3 Query: 267 NKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQ 446 NK A +LK+KK E+Q E + + + LE A ET+ A++ GAKAMK + Sbjct: 52 NKLMAKNALKKKKNLEKQQETVQGSIDSLQTSINTLETANLNLETMKAMQEGAKAMKQIH 111 Query: 447 KATNIDDVDK 476 NID VDK Sbjct: 112 GNMNIDKVDK 121
>DPO3A_UREPA (Q9PQ74) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 969 Score = 32.0 bits (71), Expect = 0.85 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Frame = +3 Query: 300 KKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRT-GAKAMKAMQKATNIDDV 470 K +YE Q +++ F + +D+ + + AKA T + L + G K + K NI+D+ Sbjct: 497 KMIYENQNKKIDLFNINYNDKFVFEDLAKARTNGIFQLESPGMKKVLLKVKPQNIEDI 554
>CCD41_HUMAN (Q9Y592) Coiled-coil domain-containing protein 41 (NY-REN-58| antigen) Length = 693 Score = 32.0 bits (71), Expect = 0.85 Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 2/56 (3%) Frame = +3 Query: 240 RAKEFSKAKNK--RAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTET 401 R +++++AK K RAAI KRK L+E +++ R+ +++ +LEA K ET Sbjct: 541 REEKYNQAKEKLQRAAIAQKKRKSLHENKLK-------RLQEKVEVLEAKKEELET 589
>HISX_GLUOX (Q5FS83) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 430 Score = 30.8 bits (68), Expect = 1.9 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = +3 Query: 342 QLRIHDQMIMLEAAKATTETVDALRTGAKAMKAMQKATNIDDVD 473 +LRI + I EAA+ + +DALRT A+ ++ A D+D Sbjct: 64 KLRISAEEIASEAARVPADLMDALRTAARRIETFHAAQMPKDLD 107
>CCD41_RAT (Q66H89) Coiled-coil domain-containing protein 41| Length = 692 Score = 30.0 bits (66), Expect = 3.2 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = +3 Query: 240 RAKEFSKAKNK--RAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTET 401 R +++++AK K RAA KRK L+E +++ R+ +++ +LEA K ET Sbjct: 540 REEKYNQAKEKLQRAATAQKKRKSLHENKLK-------RLQEKVEVLEAKKEELET 588
>CCD41_MOUSE (Q9D5R3) Coiled-coil domain-containing protein 41| Length = 692 Score = 30.0 bits (66), Expect = 3.2 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Frame = +3 Query: 240 RAKEFSKAKNK--RAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTET 401 R +++++AK K RAA KRK L+E +++ R+ +++ +LEA K ET Sbjct: 540 REEKYNQAKEKLQRAATAQKKRKSLHENKLK-------RLQEKVEVLEAKKEELET 588
>RABE1_RAT (O35550) Rab GTPase-binding effector protein 1 (Rabaptin-5)| (Rabaptin-5alpha) Length = 862 Score = 29.3 bits (64), Expect = 5.5 Identities = 16/50 (32%), Positives = 28/50 (56%) Frame = +3 Query: 249 EFSKAKNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTE 398 E + K ++ ++S R+K QQ+E L ++ + +Q+ AAKAT E Sbjct: 747 ELERIKVEKGQLESTLREK--SQQLESLQEIKVNLEEQLKKETAAKATVE 794
>RABE1_MOUSE (O35551) Rab GTPase-binding effector protein 1 (Rabaptin-5)| (Rabaptin-5alpha) Length = 862 Score = 29.3 bits (64), Expect = 5.5 Identities = 16/50 (32%), Positives = 28/50 (56%) Frame = +3 Query: 249 EFSKAKNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTE 398 E + K ++ ++S R+K QQ+E L ++ + +Q+ AAKAT E Sbjct: 747 ELERIKVEKGQLESTLREK--SQQLESLQEMKVNLEEQLKKETAAKATVE 794
>RABE1_HUMAN (Q15276) Rab GTPase-binding effector protein 1 (Rabaptin-5)| (Rabaptin-5alpha) (Rabaptin-4) (NY-REN-17 antigen) Length = 862 Score = 29.3 bits (64), Expect = 5.5 Identities = 16/50 (32%), Positives = 28/50 (56%) Frame = +3 Query: 249 EFSKAKNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTE 398 E + K ++ ++S R+K QQ+E L ++ + +Q+ AAKAT E Sbjct: 747 ELERIKVEKGQLESTLREK--SQQLESLQEIKISLEEQLKKETAAKATVE 794
>LIFO_PSEAE (Q01725) Lipase chaperone (Lipase foldase) (Lipase helper protein)| (Lipase modulator) Length = 340 Score = 28.9 bits (63), Expect = 7.2 Identities = 19/68 (27%), Positives = 29/68 (42%) Frame = +3 Query: 261 AKNKRAAIQSLKRKKLYEQQIEQLGNFQLRIHDQMIMLEAAKATTETVDALRTGAKAMKA 440 A+ K AAI L+ +QQ L Q + Q L+AA A E + +R +A Sbjct: 210 AEEKAAAIDRLRASLPEDQQESVLPQLQSELQQQTAALQAAGAGPEAIRQMRQQLVGAEA 269 Query: 441 MQKATNID 464 + +D Sbjct: 270 TTRLEQLD 277
>NUC1_NEUCR (P20824) Phosphorus acquisition-controlling protein| Length = 823 Score = 28.5 bits (62), Expect = 9.4 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -2 Query: 122 LPK*PVEHGGTSNMDSEPDSGGGG 51 LPK P + GG + D SGGGG Sbjct: 694 LPKAPAKEGGDGDGDGHSSSGGGG 717
>MOK12_SCHPO (Q9UUL4) Cell wall alpha-1,3-glucan synthase mok12 (EC 2.4.1.183)| Length = 2352 Score = 28.5 bits (62), Expect = 9.4 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 12/47 (25%) Frame = +2 Query: 23 IPPGSAK-SRLLRRLNPVPSPYL-----------RCHHVQQVIWEAQ 127 +PPGS++ S +R L+P P PYL + H++ + W Q Sbjct: 1044 VPPGSSRISNFIRFLDPPPKPYLSYKMYLNDFTRQLHYIPKGSWTVQ 1090 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,836,647 Number of Sequences: 219361 Number of extensions: 1002218 Number of successful extensions: 2937 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 2858 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2931 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
