Clone Information

BLAST Search Result

Clone Name	basdb03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY549888.2\| Triticum aestivum putative proteinase inhibitor-r...	595	e-167
2	emb\|Z48729.1\|HVBSI1 H.vulgare Bsi1 gene for putative protease in...	315	9e-83
3	gb\|L11882.1\|WHTWALI5A Triticum aestivum protein of unknown funct...	295	9e-77
4	gb\|L28009.1\|WHTWALIA Triticum aestivum (wali6) mRNA, complete cds	117	4e-23
5	gb\|L11881.1\|WHTWALI3A Triticum aestivum protein of unknown funct...	109	1e-20
6	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	68	4e-08
7	dbj\|AP002526.1\| Oryza sativa (japonica cultivar-group) genomic D...	68	4e-08
8	ref\|NM_184249.1\| Oryza sativa (japonica cultivar-group), mRNA	62	2e-06
9	gb\|AY641412.1\| Hordeum vulgare subsp. vulgare retrotransposon Sa...	56	1e-04
10	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.13
11	dbj\|AP003568.3\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.13
12	dbj\|AK070101.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.13
13	gb\|AY277400.1\| Lytechinus variegatus aristaless-like homeobox pr...	44	0.52
14	ref\|XM_858785.1\| PREDICTED: Canis familiaris similar to Serine/t...	42	2.1
15	ref\|XM_858762.1\| PREDICTED: Canis familiaris similar to Serine/t...	42	2.1
16	ref\|XM_858743.1\| PREDICTED: Canis familiaris similar to Serine/t...	42	2.1
17	ref\|XM_858723.1\| PREDICTED: Canis familiaris similar to Serine/t...	42	2.1
18	ref\|XM_544006.2\| PREDICTED: Canis familiaris similar to Serine/t...	42	2.1
19	emb\|AL358787.12\| Human DNA sequence from clone RP11-181F12 on ch...	42	2.1
20	gb\|CP000133.1\| Rhizobium etli CFN 42, complete genome	42	2.1
21	gb\|CP000138.1\| Rhizobium etli CFN 42 plasmid p42f, complete sequ...	42	2.1
22	gb\|AC113493.9\| Mus musculus chromosome 15, clone RP23-359H23, co...	40	8.2
23	gb\|CP000094.1\| Pseudomonas fluorescens PfO-1, complete genome	40	8.2
24	ref\|XM_615401.2\| PREDICTED: Bos taurus similar to serine/threoni...	40	8.2
25	ref\|NM_001040330.1\| Danio rerio zgc:136662 (zgc:136662), mRNA	40	8.2
26	gb\|AC115055.9\| Mus musculus chromosome 3, clone RP24-346I12, com...	40	8.2
27	ref\|XM_753018.1\| Ustilago maydis 521 hypothetical protein (UM019...	40	8.2
28	gb\|AC117230.3\| Mus musculus BAC clone RP23-385F15 from 16, compl...	40	8.2
29	ref\|NM_001012370.1\| Danio rerio exostoses (multiple) 1c (ext1c),...	40	8.2
30	gb\|AC096909.10\| Rattus norvegicus 8 BAC CH230-88B13 (Children's ...	40	8.2
31	gb\|BC115216.1\| Danio rerio exostoses (multiple) 1c, mRNA (cDNA c...	40	8.2
32	gb\|AC158922.8\| Mus musculus chromosome 15, clone RP23-182C12, co...	40	8.2
33	gb\|AC090116.15\| Homo sapiens 12q BAC RP11-578B16 (Roswell Park C...	40	8.2
34	ref\|XM_680169.1\| PREDICTED: Danio rerio similar to EXT1c (LOC572...	40	8.2
35	dbj\|BA000045.2\| Gloeobacter violaceus PCC 7421 DNA, complete genome	40	8.2
36	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	8.2
37	dbj\|BS000238.1\| Pan troglodytes chromosome 22 clone:PTB-016O01, ...	40	8.2
38	gb\|AF042096.3\|AF042096 Bradyrhizobium japonicum UbiE (ubiE) gene...	40	8.2
39	emb\|AL954242.1\|PTB109N16 Pan troglodytes chromosome 22 BAC PTB-1...	40	8.2
40	gb\|AY734457.1\| Danio rerio EXT1c mRNA, complete cds	40	8.2
41	emb\|AM118080.1\| Ustilago hordei mating type region MAT-1, strain...	40	8.2
42	gb\|AC144631.3\| Mus musculus BAC clone RP23-112C14 from 3, comple...	40	8.2
43	gb\|AC058786.24\| Mus musculus strain C57BL/6J chromosome 4 clone ...	40	8.2
44	emb\|AL732476.12\| Mouse DNA sequence from clone RP23-131A6 on chr...	40	8.2

>gb|AY549888.2| Triticum aestivum putative proteinase inhibitor-related protein
           (wrsi5-1) mRNA, complete cds
          Length = 608

 Score =  595 bits (300), Expect = e-167
 Identities = 409/443 (92%), Gaps = 3/443 (0%)
 Strand = Plus / Plus

                                                                       
Query: 30  accgcacaggtaaagctcgagctttgcgctaagagagttcatcggcagccatgaagagca 89
           ||||||||||| |||   |||||||||||||| || ||||||| |||  |||||||||||
Sbjct: 38  accgcacaggtgaagtgagagctttgcgctaa-agggttcatcagcaagcatgaagagca 96

                                                                       
Query: 90  ccaagctcgcggcgatcctgatcctccaggccgtcctggtcatggggatcctctcccacg 149
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 97  ccaagctcgcggcgatcctgatcctccaggccgtcctggtcatggggatcctctcacacg 156

                                                                       
Query: 150 ttaacgccgacttcttccccaagtgctgcaacaactgcaggtccttctcgggggtcgacg 209
           | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 157 tgaacgccgacttcttccccaagtgctgcaacaactgcaggtccttctccggggtcgacg 216

                                                                       
Query: 210 tctgcgacgacgcccacccccagtgccccaagggctgctccgcctgccgcgtggtgaccc 269
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 217 tctgcgacgacgcccacccccagtgccccaagggctgctcggcctgccgcgtggtgacgc 276

                                                                       
Query: 270 cgagccctcacaagacgttccgctgcgccgacatgaagagcaccgtcgacggcacctgcg 329
           | |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 277 ccagccctcacaagacgttccggtgcgccgacatgaagagcaccgtcgatggcacctgcg 336

                                                                       
Query: 330 gtggcccatgcaaaaagcactgatcgcttcagggcttcaggctcggacgaggtgtgccgc 389
           | || ||||||||||||||||||||  ||||||||||||| ||| ||||||| |||||||
Sbjct: 337 gcgggccatgcaaaaagcactgatccgttcagggcttcagtctcagacgaggggtgccgc 396

                                                                       
Query: 390 ctagaataaagctcagatgagatgagcagtcatcgtgttgctatgtttgtgtgtgggccg 449
           ||| ||||||||||||||||||||||||||||| | |   ||||| || | |||||| ||
Sbjct: 397 ctaaaataaagctcagatgagatgagcagtcatggcg--cctatgcttctctgtgggtcg 454

                                  
Query: 450 tgctatacggccaacaatatgta 472
           |||||||||||||||||||||||
Sbjct: 455 tgctatacggccaacaatatgta 477

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>emb|Z48729.1|HVBSI1 H.vulgare Bsi1 gene for putative protease inhibitor
          Length = 498

 Score =  315 bits (159), Expect = 9e-83
 Identities = 257/289 (88%), Gaps = 3/289 (1%)
 Strand = Plus / Plus

                                                                       
Query: 69  catcggcagccatgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctgg 128
           |||| ||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1   catcagcaaccatgaagggcaccaagctcgcggcgattctgatcctccaggccgtcctgg 60

                                                                       
Query: 129 tcatggggatcctctcccacgttaacgccgacttcttccccaagtgctgcaacaactgca 188
           |||||||  ||||||| ||||| ||||||| ||  ||||||| |||||||||||||||||
Sbjct: 61  tcatgggagtcctctcgcacgtgaacgccgtctatttccccacgtgctgcaacaactgca 120

                                                                       
Query: 189 ggtccttctcgggggtcgacgtctgcgacgacgcccacccccagtgccccaagggctgct 248
           |||||||||| |||||||||||||||||||||||||| || ||||||||||  |||||||
Sbjct: 121 ggtccttctccggggtcgacgtctgcgacgacgcccatccgcagtgccccaccggctgct 180

                                                                       
Query: 249 ccgcctgccgcgtggtgaccccgagccctcacaagacgttccgctgcgccgacatgaaga 308
           | || ||||||||||||||| ||| |||   | |||||||||||||||||||||||||  
Sbjct: 181 cggcgtgccgcgtggtgaccacgaaccc---ccagacgttccgctgcgccgacatgaaag 237

                                                            
Query: 309 gcaccgtcgacggcacctgcggtggcccatgcaaaaagcactgatcgct 357
            ||||||||||||||||||||| || |||||||| ||| ||||||||||
Sbjct: 238 ccaccgtcgacggcacctgcggcgggccatgcaagaagtactgatcgct 286

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>gb|L11882.1|WHTWALI5A Triticum aestivum protein of unknown function (wali5) mRNA,
           complete cds
          Length = 520

 Score =  295 bits (149), Expect = 9e-77
 Identities = 250/283 (88%), Gaps = 3/283 (1%)
 Strand = Plus / Plus

                                                                       
Query: 78  ccatgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatgggga 137
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 71  ccatgaagggcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatgggac 130

                                                                       
Query: 138 tcctctcccacgttaacgccgacttcttccccaagtgctgcaacaactgcaggtccttct 197
           ||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 131 tcctctcacacgtgaacgccgattttttccccaagtgctgcaacaactgcaggtccttct 190

                                                                       
Query: 198 cgggggtcgacgtctgcgacgacgcccacccccagtgccccaagggctgctccgcctgcc 257
           |||||||||||||||||||||||||||||||| |||| ||| |||||||||| || ||||
Sbjct: 191 cgggggtcgacgtctgcgacgacgcccaccccaagtgtccccagggctgctcggcgtgcc 250

                                                                       
Query: 258 gcgtggtgaccccgagccctcacaagacgttccgctgcgccgacatgaagagcaccgtcg 317
           |||||||| |  |||||||   | | | ||  |||||||| || |||||   ||||||||
Sbjct: 251 gcgtggtgtcgacgagccc---cgaaatgtggcgctgcgcggatatgaaatccaccgtcg 307

                                                      
Query: 318 acggcacctgcggtggcccatgcaaaaagcactgatcgcttca 360
           |||||||||||||||| || ||||| ||| |||||||| ||||
Sbjct: 308 acggcacctgcggtggaccctgcaagaagtactgatcggttca 350



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                          
Query: 482 tcgtcactgtgttttctctctcgagaaaaagctggtgttgcttgttg 528
           ||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 467 tcgtcgctgtgttttctctctcgagaaaaagttggtgttgcttgttg 513

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>gb|L28009.1|WHTWALIA Triticum aestivum (wali6) mRNA, complete cds
          Length = 585

 Score =  117 bits (59), Expect = 4e-23
 Identities = 133/157 (84%), Gaps = 3/157 (1%)
 Strand = Plus / Plus

                                                                       
Query: 80  atgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatggggatc 139
           |||||||| | || ||||| |||||||||||| ||||||||||||||||||||||| |||
Sbjct: 76  atgaagagtagcacgctcgtggcgatcctgattctccaggccgtcctggtcatgggaatc 135

                                                                       
Query: 140 ctctcccacgttaacgccgacttcttccccaagtgctgcaacaactgcaggtccttctcg 199
           ||||| || |  ||||||||    ||||| || |||||| |||||||||||| |||||||
Sbjct: 136 ctctcacaggcgaacgccga---gttcccgaaatgctgcgacaactgcaggttcttctcg 192

                                                
Query: 200 ggggtcgacgtctgcgacgacgcccacccccagtgcc 236
           |||| ||  |||||||||||||||  |||| ||||||
Sbjct: 193 ggggccgtggtctgcgacgacgccggccccaagtgcc 229

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>gb|L11881.1|WHTWALI3A Triticum aestivum protein of unknown function (wali3) mRNA,
           complete cds
          Length = 564

 Score =  109 bits (55), Expect = 1e-20
 Identities = 114/133 (85%), Gaps = 3/133 (2%)
 Strand = Plus / Plus

                                                                       
Query: 104 atcctgatcctccaggccgtcctggtcatggggatcctctcccacgttaacgccgacttc 163
           ||||||||||| |||||||||||||||||||| |||||||| || |  |||||||| |||
Sbjct: 79  atcctgatccttcaggccgtcctggtcatgggaatcctctcacaggcgaacgccgagttc 138

                                                                       
Query: 164 ttccccaagtgctgcaacaactgcaggtccttctcgggggtcgacgtctgcgacgacgcc 223
              |||||||||||| |||||||||||| ||||||||||| ||  |||||||| ||||||
Sbjct: 139 ---cccaagtgctgcgacaactgcaggttcttctcgggggccgtggtctgcgatgacgcc 195

                        
Query: 224 cacccccagtgcc 236
             |||| ||||||
Sbjct: 196 ggccccaagtgcc 208

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                           
Query: 77      gccatgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatgggg 136
               ||||||||||||| || ||||  || ||||||| | ||||||||||||||||||||||||
Sbjct: 1757733 gccatgaagagcagcacgctcatggtgatcctggttctccaggccgtcctggtcatgggg 1757674

                 
Query: 137     at 138
               ||
Sbjct: 1757673 at 1757672

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>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0504H10
          Length = 143515

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                          
Query: 77     gccatgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatgggg 136
              ||||||||||||| || ||||  || ||||||| | ||||||||||||||||||||||||
Sbjct: 100076 gccatgaagagcagcacgctcatggtgatcctggttctccaggccgtcctggtcatgggg 100017

                
Query: 137    at 138
              ||
Sbjct: 100016 at 100015

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>ref|NM_184249.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 306

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                      
Query: 80  atgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatggggat 138
           |||||||||| || ||||  || ||||||| | ||||||||||||||||||||||||||
Sbjct: 1   atgaagagcagcacgctcatggtgatcctggttctccaggccgtcctggtcatggggat 59

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>gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra5, complete
             sequence; splicing factor SF2-like protein (SF2) and
             universal stress protein (USP1) genes and Hv
             receptor-kinase-like pseudogene, complete cds; and
             retrotransposons Sandra6 and Sandra7, complete sequence
          Length = 82293

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                 
Query: 111   tcctccaggccgtcctggtcatggggatcctctccc 146
             ||||||||||| ||||||||||||| ||||||||||
Sbjct: 71810 tcctccaggccatcctggtcatgggaatcctctccc 71845

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 123      tcctggtcatggggatcctctcc 145
                |||||||||||||||||||||||
Sbjct: 25930562 tcctggtcatggggatcctctcc 25930540

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>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0017B12
          Length = 157424

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 123   tcctggtcatggggatcctctcc 145
             |||||||||||||||||||||||
Sbjct: 85660 tcctggtcatggggatcctctcc 85638

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>dbj|AK070101.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044I16, full
           insert sequence
          Length = 2261

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 123 tcctggtcatggggatcctctcc 145
           |||||||||||||||||||||||
Sbjct: 818 tcctggtcatggggatcctctcc 840

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>gb|AY277400.1| Lytechinus variegatus aristaless-like homeobox protein mRNA, complete
            cds
          Length = 5321

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 561  tcatcaaaaacatgaaaatcagttct 586
            ||||||||||||||||||| ||||||
Sbjct: 5161 tcatcaaaaacatgaaaattagttct 5136

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>ref|XM_858785.1| PREDICTED: Canis familiaris similar to Serine/threonine-protein
            kinase 10 (Lymphocyte-oriented kinase), transcript
            variant 5 (LOC486876), mRNA
          Length = 4759

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 562  catcaaaaacatgaaaatcag 582
            |||||||||||||||||||||
Sbjct: 2555 catcaaaaacatgaaaatcag 2575

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>ref|XM_858762.1| PREDICTED: Canis familiaris similar to Serine/threonine-protein
            kinase 10 (Lymphocyte-oriented kinase), transcript
            variant 4 (LOC486876), mRNA
          Length = 4744

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 562  catcaaaaacatgaaaatcag 582
            |||||||||||||||||||||
Sbjct: 2540 catcaaaaacatgaaaatcag 2560

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>ref|XM_858743.1| PREDICTED: Canis familiaris similar to Serine/threonine-protein
            kinase 10 (Lymphocyte-oriented kinase), transcript
            variant 3 (LOC486876), mRNA
          Length = 4876

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 562  catcaaaaacatgaaaatcag 582
            |||||||||||||||||||||
Sbjct: 2672 catcaaaaacatgaaaatcag 2692

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>ref|XM_858723.1| PREDICTED: Canis familiaris similar to Serine/threonine-protein
            kinase 10 (Lymphocyte-oriented kinase), transcript
            variant 2 (LOC486876), mRNA
          Length = 4777

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 562  catcaaaaacatgaaaatcag 582
            |||||||||||||||||||||
Sbjct: 2573 catcaaaaacatgaaaatcag 2593

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>ref|XM_544006.2| PREDICTED: Canis familiaris similar to Serine/threonine-protein
            kinase 10 (Lymphocyte-oriented kinase), transcript
            variant 1 (LOC486876), mRNA
          Length = 5632

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 562  catcaaaaacatgaaaatcag 582
            |||||||||||||||||||||
Sbjct: 3428 catcaaaaacatgaaaatcag 3448

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>emb|AL358787.12| Human DNA sequence from clone RP11-181F12 on chromosome 10 Contains a
             novel gene, complete sequence
          Length = 118034

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 511   agctggtgttgcttgttgaat 531
             |||||||||||||||||||||
Sbjct: 45458 agctggtgttgcttgttgaat 45438

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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 98      gcggcgatcctgatcctccaggccg 122
               |||||||||||||||||||| ||||
Sbjct: 1946744 gcggcgatcctgatcctccacgccg 1946720

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>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence
          Length = 642517

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 303    tgaagagcaccgtcgacggca 323
              |||||||||||||||||||||
Sbjct: 634902 tgaagagcaccgtcgacggca 634922

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>gb|AC113493.9| Mus musculus chromosome 15, clone RP23-359H23, complete sequence
          Length = 207687

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 566  aaaaacatgaaaatcagttc 585
            ||||||||||||||||||||
Sbjct: 1737 aaaaacatgaaaatcagttc 1756

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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 169     caagtgctgcaacaactgca 188
               ||||||||||||||||||||
Sbjct: 2027891 caagtgctgcaacaactgca 2027872

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>ref|XM_615401.2| PREDICTED: Bos taurus similar to serine/threonine kinase 2
            (LOC535342), partial mRNA
          Length = 3692

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 562  catcaaaaacatgaaaatca 581
            ||||||||||||||||||||
Sbjct: 3235 catcaaaaacatgaaaatca 3254

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>ref|NM_001040330.1| Danio rerio zgc:136662 (zgc:136662), mRNA
          Length = 2659

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 309  gcaccgtcgacggcacctgc 328
            ||||||||||||||||||||
Sbjct: 1408 gcaccgtcgacggcacctgc 1389

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>gb|AC115055.9| Mus musculus chromosome 3, clone RP24-346I12, complete sequence
          Length = 204367

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 425   tgttgctatgtttgtgtgtg 444
             ||||||||||||||||||||
Sbjct: 91892 tgttgctatgtttgtgtgtg 91873

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>ref|XM_753018.1| Ustilago maydis 521 hypothetical protein (UM01964.1) partial mRNA
          Length = 1812

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 73  ggcagccatgaagagcacca 92
           ||||||||||||||||||||
Sbjct: 267 ggcagccatgaagagcacca 248

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>gb|AC117230.3| Mus musculus BAC clone RP23-385F15 from 16, complete sequence
          Length = 184556

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 515   ggtgttgcttgttgaataaa 534
             ||||||||||||||||||||
Sbjct: 83198 ggtgttgcttgttgaataaa 83217

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>ref|NM_001012370.1| Danio rerio exostoses (multiple) 1c (ext1c), mRNA
          Length = 2214

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 309  gcaccgtcgacggcacctgc 328
            ||||||||||||||||||||
Sbjct: 1156 gcaccgtcgacggcacctgc 1137

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>gb|AC096909.10| Rattus norvegicus 8 BAC CH230-88B13 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 241078

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      aggaaagcattctaccacta 27
              ||||||||||||||||||||
Sbjct: 123026 aggaaagcattctaccacta 123007

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>gb|BC115216.1| Danio rerio exostoses (multiple) 1c, mRNA (cDNA clone MGC:136662
            IMAGE:8000407), complete cds
          Length = 2659

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 309  gcaccgtcgacggcacctgc 328
            ||||||||||||||||||||
Sbjct: 1408 gcaccgtcgacggcacctgc 1389

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>gb|AC158922.8| Mus musculus chromosome 15, clone RP23-182C12, complete sequence
          Length = 201723

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 566   aaaaacatgaaaatcagttc 585
             ||||||||||||||||||||
Sbjct: 48580 aaaaacatgaaaatcagttc 48561

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>gb|AC090116.15| Homo sapiens 12q BAC RP11-578B16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 162004

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 399   agctcagatgagatgagcag 418
             ||||||||||||||||||||
Sbjct: 86131 agctcagatgagatgagcag 86150

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>ref|XM_680169.1| PREDICTED: Danio rerio similar to EXT1c (LOC572763), partial mRNA
          Length = 240

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 309 gcaccgtcgacggcacctgc 328
           ||||||||||||||||||||
Sbjct: 136 gcaccgtcgacggcacctgc 117

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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 326     tgcggtggcccatgcaaaaa 345
               ||||||||||||||||||||
Sbjct: 1357655 tgcggtggcccatgcaaaaa 1357636

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 286    gttccgctgcgccgacatga 305
              ||||||||||||||||||||
Sbjct: 807673 gttccgctgcgccgacatga 807692

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>dbj|BS000238.1| Pan troglodytes chromosome 22 clone:PTB-016O01, map 22, complete
              sequences
          Length = 168017

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    acgcccacccccagtgcccc 238
              ||||||||||||||||||||
Sbjct: 156620 acgcccacccccagtgcccc 156639

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>gb|AF042096.3|AF042096 Bradyrhizobium japonicum UbiE (ubiE) gene, partial cds; AarF (aarF),
            panthotenate metabolism flavoprotein (dfp),
            deoxyuridine-triphosphatase (dut), putative sensor
            protein (bdfA), GalF-like (galF), hypothetical protein
            genes, complete cds; putative helicase 2 gene, partial
            cds; and unknown genes
          Length = 13289

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 286  gttccgctgcgccgacatga 305
            ||||||||||||||||||||
Sbjct: 8366 gttccgctgcgccgacatga 8347

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>emb|AL954242.1|PTB109N16 Pan troglodytes chromosome 22 BAC PTB-109N16, complete sequence
          Length = 190477

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   acgcccacccccagtgcccc 238
             ||||||||||||||||||||
Sbjct: 61446 acgcccacccccagtgcccc 61465

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>gb|AY734457.1| Danio rerio EXT1c mRNA, complete cds
          Length = 2214

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 309  gcaccgtcgacggcacctgc 328
            ||||||||||||||||||||
Sbjct: 1156 gcaccgtcgacggcacctgc 1137

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>emb|AM118080.1| Ustilago hordei mating type region MAT-1, strain 364
          Length = 526707

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 75     cagccatgaagagcaccaagctcg 98
              ||||||||||||| ||||||||||
Sbjct: 158311 cagccatgaagaggaccaagctcg 158334

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>gb|AC144631.3| Mus musculus BAC clone RP23-112C14 from 3, complete sequence
          Length = 179548

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 537    cctctgatggttgtgcgtgt 556
              ||||||||||||||||||||
Sbjct: 135462 cctctgatggttgtgcgtgt 135481

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>gb|AC058786.24| Mus musculus strain C57BL/6J chromosome 4 clone rp23-117o7, complete
             sequence
          Length = 209737

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 433   tgtttgtgtgtgggccgtgc 452
             ||||||||||||||||||||
Sbjct: 97290 tgtttgtgtgtgggccgtgc 97271

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>emb|AL732476.12| Mouse DNA sequence from clone RP23-131A6 on chromosome 4, complete
            sequence
          Length = 194554

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 433  tgtttgtgtgtgggccgtgc 452
            ||||||||||||||||||||
Sbjct: 8226 tgtttgtgtgtgggccgtgc 8245


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,711,613
Number of Sequences: 3902068
Number of extensions: 4711613
Number of successful extensions: 98472
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98116
Number of HSP's gapped (non-prelim): 352
length of query: 601
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 578
effective length of database: 17,143,297,704
effective search space: 9908826072912
effective search space used: 9908826072912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result