ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63p23 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X07851.1|TARSBA Wheat mRNA for Rubisco subunit binding-protein alpha subunit Length = 1834 Score = 735 bits (371), Expect = 0.0 Identities = 398/407 (97%) Strand = Plus / Plus Query: 200 gcgcggacgccaaggagatcgccttcgaccagaagtcccgggccgcgctccaggccggcg 259 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 2 gcgcggacgccaaggaaatcgccttcgaccagaagtcccgcgccgcgctccaggccggcg 61 Query: 260 tcgagaagctcgccaacgccgtcggcgtcaccctcggcccgcgagggaggaatgtagtgc 319 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 62 tcgagaagctcgccaacgccgtcggcgtcaccctcggcccgcgagggaggaacgtagtgc 121 Query: 320 tggatgagcatggcaaccccaaagtggtgaacgatggtgttaccattgcccgtgctattg 379 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 tggatgagtatggcaaccccaaagtggtgaacgatggtgttaccattgcccgtgctattg 181 Query: 380 agctagctaacccaatggaaaatgccggtgcagctctgattcgtgaggttgctagcaaga 439 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 182 agctagctaacccaatggaaaatgcgggtgcagctctgattcgtgaggttgctagcaaga 241 Query: 440 ctaatgattctgctggtgatgggactacgactgcttgtgtccttgctcgagaaatcatca 499 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 ccaatgattctgctggtgatgggactacgactgcttgtgtccttgctcgagaaatcatca 301 Query: 500 agctgggcattctgagcgtaacttctggtgcaaaccctgtatcactaaagaaaggaatcg 559 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct: 302 agctgggcattttgagtgtaacttctggtgcaaaccctgtatcactaaagaaaggaatag 361 Query: 560 acaaaactgtccagggtctgattgaagagcttgaaagaaaagctaga 606 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 362 acaaaactgtccagggtctgattgaagagcttgaaagaaaagctaga 408
>dbj|AK120503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122K17, full insert sequence Length = 2070 Score = 569 bits (287), Expect = e-159 Identities = 449/503 (89%) Strand = Plus / Plus Query: 88 cctccaatggcgtcggccaacgccatctccaccgcctccctcctccgctccttctcctcc 147 |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 82 cctctaatggcgtccgccaacgccatctccaccgcctccctcctccgctctttctcctcc 141 Query: 148 caggggaggctgaggaggtccaagaacggccgttcgtcgcggctggtggtgcgcgcggac 207 ||||||||| |||||||| ||||||| || || || |||||| |||||||| |||||| Sbjct: 142 caggggagggtgaggagggccaagaatgggcgggcgcagcggctagtggtgcgggcggac 201 Query: 208 gccaaggagatcgccttcgaccagaagtcccgggccgcgctccaggccggcgtcgagaag 267 |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 202 gccaaggacatcgccttcgaccagaaatcccgggcggcgctccaggccggcgtcgagaag 261 Query: 268 ctcgccaacgccgtcggcgtcaccctcggcccgcgagggaggaatgtagtgctggatgag 327 |||||||||||||| ||||||||||||||||| |||||||| || |||||||| |||||| Sbjct: 262 ctcgccaacgccgttggcgtcaccctcggcccacgagggagaaacgtagtgcttgatgag 321 Query: 328 catggcaaccccaaagtggtgaacgatggtgttaccattgcccgtgctattgagctagct 387 | |||| ||||||||||| || ||||| || ||||||||||| |||||||||||| | Sbjct: 322 tacggcagtcccaaagtggtaaatgatggagtcaccattgcccgggctattgagctatat 381 Query: 388 aacccaatggaaaatgccggtgcagctctgattcgtgaggttgctagcaagactaatgat 447 | || ||||||||||| |||||||| |||| |||||||||||||||||||| |||||| Sbjct: 382 gatccgatggaaaatgctggtgcagcattgatccgtgaggttgctagcaagaccaatgat 441 Query: 448 tctgctggtgatgggactacgactgcttgtgtccttgctcgagaaatcatcaagctgggc 507 |||||||||||||||||||| || || | |||||||||||| |||||||||||||||||| Sbjct: 442 tctgctggtgatgggactacaaccgcctctgtccttgctcgtgaaatcatcaagctgggc 501 Query: 508 attctgagcgtaacttctggtgcaaaccctgtatcactaaagaaaggaatcgacaaaact 567 || |||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct: 502 cttttgagtgtaacttctggtgcaaaccctgtatcacttaagaaaggaatagacaaaaca 561 Query: 568 gtccagggtctgattgaagagct 590 || || ||||| ||||||||||| Sbjct: 562 gtgcatggtcttattgaagagct 584
>dbj|AK100602.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107D12, full insert sequence Length = 1985 Score = 547 bits (276), Expect = e-152 Identities = 447/503 (88%), Gaps = 2/503 (0%) Strand = Plus / Plus Query: 88 cctccaatggcgtcggccaacgccatctccaccgcctccctcctccgctccttctcctcc 147 |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 82 cctctaatggcgtccgccaacgccatctccaccgcctccctcctccgctctttctcctcc 141 Query: 148 caggggaggctgaggaggtccaagaacggccgttcgtcgcggctggtggtgcgcgcggac 207 ||||||||| |||||||| ||||||| || || || |||||| |||||||| |||||| Sbjct: 142 caggggagggtgaggagggccaagaatgggcgggcgcagcggctagtggtgcgggcggac 201 Query: 208 gccaaggagatcgccttcgaccagaagtcccgggccgcgctccaggccggcgtcgagaag 267 |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 202 gccaaggacatcgccttcgaccagaaatcccgggcggcgctccaggccggcgtcgagaag 261 Query: 268 ctcgccaacgccgtcggcgtcaccctcggcccgcgagggaggaatgtagtgctggatgag 327 |||||||||||||| ||||||||||||||||| |||||||| || |||||||| |||||| Sbjct: 262 ctcgccaacgccgttggcgtcaccctcggcccacgagggagaaacgtagtgcttgatgag 321 Query: 328 catggcaaccccaaagtggtgaacgatggtgttaccattgcccgtgctattgagctagct 387 | |||| ||||||||||| || ||||| || ||||||||||| |||||||||||| | Sbjct: 322 tacggcagtcccaaagtggtaaatgatggagtcaccattgcccgggctattgagctatat 381 Query: 388 aacccaatggaaaatgccggtgcagctctgattcgtgaggttgctagcaagactaatgat 447 | || ||||||||||| |||||||| |||| |||||||||||||||||||| |||||| Sbjct: 382 gatccgatggaaaatgctggtgcagcattgatccgtgaggttgctagcaagaccaatgat 441 Query: 448 tctgctggtgatgggactacgactgcttgtgtccttgctcgagaaatcatcaagctgggc 507 |||||||||||||||||||| || || | |||||||||||| |||||||||||||||||| Sbjct: 442 tctgctggtgatgggactacaaccgcctctgtccttgctcgtgaaatcatcaagctgggc 501 Query: 508 attctgagcgtaacttctggtgcaaaccctgtatcactaaagaaaggaatcgacaaaact 567 || |||| |||||| ||||||||||||||||||||| ||||||||||| |||||||| Sbjct: 502 cttttgagtgtaact--tggtgcaaaccctgtatcacttaagaaaggaatagacaaaaca 559 Query: 568 gtccagggtctgattgaagagct 590 || || ||||| ||||||||||| Sbjct: 560 gtgcatggtcttattgaagagct 582
>gb|BT024101.1| Zea mays clone EL01N0524E01 mRNA sequence Length = 2106 Score = 398 bits (201), Expect = e-108 Identities = 351/401 (87%) Strand = Plus / Plus Query: 193 gtggtgcgcgcggacgccaaggagatcgccttcgaccagaagtcccgggccgcgctccag 252 |||||||| ||| ||||||| || || ||||| |||||||| ||| |||| ||||| ||| Sbjct: 190 gtggtgcgtgcgaacgccaaagacattgcctttgaccagaaatccagggcagcgctgcag 249 Query: 253 gccggcgtcgagaagctcgccaacgccgtcggcgtcaccctcggcccgcgagggaggaat 312 ||||||||||||||||| || ||||||||||| ||||||||||| || |||||||||||| Sbjct: 250 gccggcgtcgagaagctggcaaacgccgtcggtgtcaccctcgggccacgagggaggaat 309 Query: 313 gtagtgctggatgagcatggcaaccccaaagtggtgaacgatggtgttaccattgcccgt 372 || ||||| |||||| | |||||||||||||| ||||| ||||| || || ||||||||| Sbjct: 310 gtggtgctcgatgagtacggcaaccccaaagttgtgaatgatggagtcactattgcccgt 369 Query: 373 gctattgagctagctaacccaatggaaaatgccggtgcagctctgattcgtgaggttgct 432 ||||||||||| | | |||||||||||||| |||||||| ||||||||||||||||| Sbjct: 370 gctattgagctgtatgatccaatggaaaatgctggtgcagcattgattcgtgaggttgct 429 Query: 433 agcaagactaatgattctgctggtgatgggactacgactgcttgtgtccttgctcgagaa 492 |||||||| |||||||| ||||||||||||||||| ||||| | ||||||||||| ||| Sbjct: 430 agcaagaccaatgattcagctggtgatgggactacaactgcatccgtccttgctcgtgaa 489 Query: 493 atcatcaagctgggcattctgagcgtaacttctggtgcaaaccctgtatcactaaagaaa 552 ||||||||||| ||| ||||||| ||||| ||||||||||| |||||||||||||||||| Sbjct: 490 atcatcaagctaggccttctgagtgtaacatctggtgcaaatcctgtatcactaaagaaa 549 Query: 553 ggaatcgacaaaactgtccagggtctgattgaagagcttga 593 ||||| ||||||||||| ||||| || ||| | |||||||| Sbjct: 550 ggaatagacaaaactgtgcagggcctaattcaggagcttga 590 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 92 caatggcgtcggccaacgccatctccaccgcctccctcctccg 134 ||||||| || || || |||||||||||||||||||||||||| Sbjct: 107 caatggcatccgcgaatgccatctccaccgcctccctcctccg 149
>gb|AY107545.1| Zea mays PCO123571 mRNA sequence Length = 830 Score = 391 bits (197), Expect = e-105 Identities = 350/401 (87%) Strand = Plus / Plus Query: 193 gtggtgcgcgcggacgccaaggagatcgccttcgaccagaagtcccgggccgcgctccag 252 |||||||| ||| ||||||| || || ||||| |||||||| ||| |||| ||||| ||| Sbjct: 173 gtggtgcgtgcgaacgccaaagacattgcctttgaccagaaatccagggcagcgctgcag 232 Query: 253 gccggcgtcgagaagctcgccaacgccgtcggcgtcaccctcggcccgcgagggaggaat 312 |||||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||| Sbjct: 233 gccggcgtcgagaagctcgcaaacgccgtcggtgtcaccctcgggccacgagggaggaat 292 Query: 313 gtagtgctggatgagcatggcaaccccaaagtggtgaacgatggtgttaccattgcccgt 372 || ||||| |||||| | || ||||| ||||| ||||| ||||| || || ||||||||| Sbjct: 293 gtggtgctcgatgagtacggaaaccctaaagttgtgaatgatggagtcactattgcccgt 352 Query: 373 gctattgagctagctaacccaatggaaaatgccggtgcagctctgattcgtgaggttgct 432 ||||||||||| | | |||||||||||||| |||||||| ||||||||||||||||| Sbjct: 353 gctattgagctgtatgatccaatggaaaatgctggtgcagcattgattcgtgaggttgct 412 Query: 433 agcaagactaatgattctgctggtgatgggactacgactgcttgtgtccttgctcgagaa 492 |||||||| |||||||| ||||||||||||||||| ||||| | ||||||||||| ||| Sbjct: 413 agcaagaccaatgattcagctggtgatgggactacaactgcgtccgtccttgctcgtgaa 472 Query: 493 atcatcaagctgggcattctgagcgtaacttctggtgcaaaccctgtatcactaaagaaa 552 ||||||||||| ||| ||||||| ||||| ||||||||||| |||||||||||||||||| Sbjct: 473 atcatcaagctaggccttctgagtgtaacatctggtgcaaatcctgtatcactaaagaaa 532 Query: 553 ggaatcgacaaaactgtccagggtctgattgaagagcttga 593 ||||| ||||||||||| ||||| || ||| | |||||||| Sbjct: 533 ggaatagacaaaactgtgcagggcctaattcaggagcttga 573 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 92 caatggcgtcggccaacgccatctccaccgcctccctcctccg 134 ||||||| || || || |||||||||||||||||||||||||| Sbjct: 90 caatggcatccgcgaatgccatctccaccgcctccctcctccg 132
>ref|XM_470503.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1998 Score = 214 bits (108), Expect = 3e-52 Identities = 279/336 (83%) Strand = Plus / Plus Query: 207 cgccaaggagatcgccttcgaccagaagtcccgggccgcgctccaggccggcgtcgagaa 266 ||||||||||||||||||||||||| || || || | |||||||||||||||||||| Sbjct: 206 cgccaaggagatcgccttcgaccagggatcgcgatcctccctccaggccggcgtcgagaa 265 Query: 267 gctcgccaacgccgtcggcgtcaccctcggcccgcgagggaggaatgtagtgctggatga 326 ||||||| |||||||| |||||||||||| || |||| || ||||| || ||||||| Sbjct: 266 gctcgccgccgccgtcgccgtcaccctcggtcccagaggaagaaatgtcgtcttggatga 325 Query: 327 gcatggcaaccccaaagtggtgaacgatggtgttaccattgcccgtgctattgagctagc 386 | ||| | |||||||||||| || || || ||||||||||| || ||||||||||| || Sbjct: 326 gtttgggagccccaaagtggtcaatgacggagttaccattgctcgagctattgagctcgc 385 Query: 387 taacccaatggaaaatgccggtgcagctctgattcgtgaggttgctagcaagactaatga 446 | | |||||||| ||||||||||| ||| |||||||||||||||| |||||||| ||||| Sbjct: 386 tgatccaatggagaatgccggtgctgctttgattcgtgaggttgccagcaagacaaatga 445 Query: 447 ttctgctggtgatgggactacgactgcttgtgtccttgctcgagaaatcatcaagctggg 506 || || |||||||||||||| || || | |||||| ||||| || ||||| || |||| Sbjct: 446 ctcagcaggtgatgggactacaaccgcatctgtcctggctcgtgagatcataaaattggg 505 Query: 507 cattctgagcgtaacttctggtgcaaaccctgtatc 542 | | ||||| || ||||| || |||||||| ||||| Sbjct: 506 cctgctgagtgttacttcaggggcaaacccagtatc 541
>gb|AY224481.1| Oryza sativa (japonica cultivar-group) isolate 29884 putative chaperonin 60 alpha subunit mRNA, partial cds Length = 673 Score = 214 bits (108), Expect = 3e-52 Identities = 279/336 (83%) Strand = Plus / Plus Query: 207 cgccaaggagatcgccttcgaccagaagtcccgggccgcgctccaggccggcgtcgagaa 266 ||||||||||||||||||||||||| || || || | |||||||||||||||||||| Sbjct: 192 cgccaaggagatcgccttcgaccagggatcgcgatcctccctccaggccggcgtcgagaa 251 Query: 267 gctcgccaacgccgtcggcgtcaccctcggcccgcgagggaggaatgtagtgctggatga 326 ||||||| |||||||| |||||||||||| || |||| || ||||| || ||||||| Sbjct: 252 gctcgccgccgccgtcgccgtcaccctcggtcccagaggaagaaatgtcgtcttggatga 311 Query: 327 gcatggcaaccccaaagtggtgaacgatggtgttaccattgcccgtgctattgagctagc 386 | ||| | |||||||||||| || || || ||||||||||| || ||||||||||| || Sbjct: 312 gtttgggagccccaaagtggtcaatgacggagttaccattgctcgagctattgagctcgc 371 Query: 387 taacccaatggaaaatgccggtgcagctctgattcgtgaggttgctagcaagactaatga 446 | | |||||||| ||||||||||| ||| |||||||||||||||| |||||||| ||||| Sbjct: 372 tgatccaatggagaatgccggtgctgctttgattcgtgaggttgccagcaagacaaatga 431 Query: 447 ttctgctggtgatgggactacgactgcttgtgtccttgctcgagaaatcatcaagctggg 506 || || |||||||||||||| || || | |||||| ||||| || ||||| || |||| Sbjct: 432 ctcagcaggtgatgggactacaaccgcatctgtcctggctcgtgagatcataaaattggg 491 Query: 507 cattctgagcgtaacttctggtgcaaaccctgtatc 542 | | ||||| || ||||| || |||||||| ||||| Sbjct: 492 cctgctgagtgttacttcaggggcaaacccagtatc 527
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 210 bits (106), Expect = 4e-51 Identities = 151/166 (90%) Strand = Plus / Plus Query: 425 aggttgctagcaagactaatgattctgctggtgatgggactacgactgcttgtgtccttg 484 |||||||||||||||| |||||||||||||||||||||||||| || || | |||||||| Sbjct: 10294286 aggttgctagcaagaccaatgattctgctggtgatgggactacaaccgcctctgtccttg 10294345 Query: 485 ctcgagaaatcatcaagctgggcattctgagcgtaacttctggtgcaaaccctgtatcac 544 |||| |||||||||||||||||| || |||| |||||||||||||||||||||||||||| Sbjct: 10294346 ctcgtgaaatcatcaagctgggccttttgagtgtaacttctggtgcaaaccctgtatcac 10294405 Query: 545 taaagaaaggaatcgacaaaactgtccagggtctgattgaagagct 590 | ||||||||||| |||||||| || || ||||| ||||||||||| Sbjct: 10294406 ttaagaaaggaatagacaaaacagtgcatggtcttattgaagagct 10294451 Score = 194 bits (98), Expect = 2e-46 Identities = 143/158 (90%) Strand = Plus / Plus Query: 148 caggggaggctgaggaggtccaagaacggccgttcgtcgcggctggtggtgcgcgcggac 207 ||||||||| |||||||| ||||||| || || || |||||| |||||||| |||||| Sbjct: 10293000 caggggagggtgaggagggccaagaatgggcgggcgcagcggctagtggtgcgggcggac 10293059 Query: 208 gccaaggagatcgccttcgaccagaagtcccgggccgcgctccaggccggcgtcgagaag 267 |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 10293060 gccaaggacatcgccttcgaccagaaatcccgggcggcgctccaggccggcgtcgagaag 10293119 Query: 268 ctcgccaacgccgtcggcgtcaccctcggcccgcgagg 305 |||||||||||||| ||||||||||||||||| ||||| Sbjct: 10293120 ctcgccaacgccgttggcgtcaccctcggcccacgagg 10293157 Score = 103 bits (52), Expect = 7e-19 Identities = 61/64 (95%) Strand = Plus / Plus Query: 88 cctccaatggcgtcggccaacgccatctccaccgcctccctcctccgctccttctcctcc 147 |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 10292703 cctctaatggcgtccgccaacgccatctccaccgcctccctcctccgctctttctcctcc 10292762 Query: 148 cagg 151 |||| Sbjct: 10292763 cagg 10292766 Score = 83.8 bits (42), Expect = 6e-13 Identities = 105/126 (83%) Strand = Plus / Plus Query: 303 agggaggaatgtagtgctggatgagcatggcaaccccaaagtggtgaacgatggtgttac 362 |||||| || |||||||| |||||| | |||| ||||||||||| || ||||| || || Sbjct: 10294060 agggagaaacgtagtgcttgatgagtacggcagtcccaaagtggtaaatgatggagtcac 10294119 Query: 363 cattgcccgtgctattgagctagctaacccaatggaaaatgccggtgcagctctgattcg 422 ||||||||| |||||||||||| | | || ||||||||||| |||||||| |||| || Sbjct: 10294120 cattgcccgggctattgagctatatgatccgatggaaaatgctggtgcagcattgatccg 10294179 Query: 423 tgaggt 428 |||||| Sbjct: 10294180 tgaggt 10294185 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 47 cctcaccagctcgctcgcccc 67 ||||||||||||||||||||| Sbjct: 16537297 cctcaccagctcgctcgcccc 16537317 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 cccacctccgtctccgcccc 84 |||||||||||||||||||| Sbjct: 9310449 cccacctccgtctccgcccc 9310430
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 210 bits (106), Expect = 4e-51 Identities = 151/166 (90%) Strand = Plus / Plus Query: 425 aggttgctagcaagactaatgattctgctggtgatgggactacgactgcttgtgtccttg 484 |||||||||||||||| |||||||||||||||||||||||||| || || | |||||||| Sbjct: 10294168 aggttgctagcaagaccaatgattctgctggtgatgggactacaaccgcctctgtccttg 10294227 Query: 485 ctcgagaaatcatcaagctgggcattctgagcgtaacttctggtgcaaaccctgtatcac 544 |||| |||||||||||||||||| || |||| |||||||||||||||||||||||||||| Sbjct: 10294228 ctcgtgaaatcatcaagctgggccttttgagtgtaacttctggtgcaaaccctgtatcac 10294287 Query: 545 taaagaaaggaatcgacaaaactgtccagggtctgattgaagagct 590 | ||||||||||| |||||||| || || ||||| ||||||||||| Sbjct: 10294288 ttaagaaaggaatagacaaaacagtgcatggtcttattgaagagct 10294333 Score = 194 bits (98), Expect = 2e-46 Identities = 143/158 (90%) Strand = Plus / Plus Query: 148 caggggaggctgaggaggtccaagaacggccgttcgtcgcggctggtggtgcgcgcggac 207 ||||||||| |||||||| ||||||| || || || |||||| |||||||| |||||| Sbjct: 10292882 caggggagggtgaggagggccaagaatgggcgggcgcagcggctagtggtgcgggcggac 10292941 Query: 208 gccaaggagatcgccttcgaccagaagtcccgggccgcgctccaggccggcgtcgagaag 267 |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 10292942 gccaaggacatcgccttcgaccagaaatcccgggcggcgctccaggccggcgtcgagaag 10293001 Query: 268 ctcgccaacgccgtcggcgtcaccctcggcccgcgagg 305 |||||||||||||| ||||||||||||||||| ||||| Sbjct: 10293002 ctcgccaacgccgttggcgtcaccctcggcccacgagg 10293039 Score = 103 bits (52), Expect = 7e-19 Identities = 61/64 (95%) Strand = Plus / Plus Query: 88 cctccaatggcgtcggccaacgccatctccaccgcctccctcctccgctccttctcctcc 147 |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 10292585 cctctaatggcgtccgccaacgccatctccaccgcctccctcctccgctctttctcctcc 10292644 Query: 148 cagg 151 |||| Sbjct: 10292645 cagg 10292648 Score = 83.8 bits (42), Expect = 6e-13 Identities = 105/126 (83%) Strand = Plus / Plus Query: 303 agggaggaatgtagtgctggatgagcatggcaaccccaaagtggtgaacgatggtgttac 362 |||||| || |||||||| |||||| | |||| ||||||||||| || ||||| || || Sbjct: 10293942 agggagaaacgtagtgcttgatgagtacggcagtcccaaagtggtaaatgatggagtcac 10294001 Query: 363 cattgcccgtgctattgagctagctaacccaatggaaaatgccggtgcagctctgattcg 422 ||||||||| |||||||||||| | | || ||||||||||| |||||||| |||| || Sbjct: 10294002 cattgcccgggctattgagctatatgatccgatggaaaatgctggtgcagcattgatccg 10294061 Query: 423 tgaggt 428 |||||| Sbjct: 10294062 tgaggt 10294067 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 47 cctcaccagctcgctcgcccc 67 ||||||||||||||||||||| Sbjct: 16490530 cctcaccagctcgctcgcccc 16490550 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 cccacctccgtctccgcccc 84 |||||||||||||||||||| Sbjct: 9310334 cccacctccgtctccgcccc 9310315
>emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb0115B15 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135439 Score = 210 bits (106), Expect = 4e-51 Identities = 151/166 (90%) Strand = Plus / Plus Query: 425 aggttgctagcaagactaatgattctgctggtgatgggactacgactgcttgtgtccttg 484 |||||||||||||||| |||||||||||||||||||||||||| || || | |||||||| Sbjct: 57205 aggttgctagcaagaccaatgattctgctggtgatgggactacaaccgcctctgtccttg 57264 Query: 485 ctcgagaaatcatcaagctgggcattctgagcgtaacttctggtgcaaaccctgtatcac 544 |||| |||||||||||||||||| || |||| |||||||||||||||||||||||||||| Sbjct: 57265 ctcgtgaaatcatcaagctgggccttttgagtgtaacttctggtgcaaaccctgtatcac 57324 Query: 545 taaagaaaggaatcgacaaaactgtccagggtctgattgaagagct 590 | ||||||||||| |||||||| || || ||||| ||||||||||| Sbjct: 57325 ttaagaaaggaatagacaaaacagtgcatggtcttattgaagagct 57370 Score = 194 bits (98), Expect = 2e-46 Identities = 143/158 (90%) Strand = Plus / Plus Query: 148 caggggaggctgaggaggtccaagaacggccgttcgtcgcggctggtggtgcgcgcggac 207 ||||||||| |||||||| ||||||| || || || |||||| |||||||| |||||| Sbjct: 55919 caggggagggtgaggagggccaagaatgggcgggcgcagcggctagtggtgcgggcggac 55978 Query: 208 gccaaggagatcgccttcgaccagaagtcccgggccgcgctccaggccggcgtcgagaag 267 |||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct: 55979 gccaaggacatcgccttcgaccagaaatcccgggcggcgctccaggccggcgtcgagaag 56038 Query: 268 ctcgccaacgccgtcggcgtcaccctcggcccgcgagg 305 |||||||||||||| ||||||||||||||||| ||||| Sbjct: 56039 ctcgccaacgccgttggcgtcaccctcggcccacgagg 56076 Score = 103 bits (52), Expect = 7e-19 Identities = 61/64 (95%) Strand = Plus / Plus Query: 88 cctccaatggcgtcggccaacgccatctccaccgcctccctcctccgctccttctcctcc 147 |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 55622 cctctaatggcgtccgccaacgccatctccaccgcctccctcctccgctctttctcctcc 55681 Query: 148 cagg 151 |||| Sbjct: 55682 cagg 55685 Score = 83.8 bits (42), Expect = 6e-13 Identities = 105/126 (83%) Strand = Plus / Plus Query: 303 agggaggaatgtagtgctggatgagcatggcaaccccaaagtggtgaacgatggtgttac 362 |||||| || |||||||| |||||| | |||| ||||||||||| || ||||| || || Sbjct: 56979 agggagaaacgtagtgcttgatgagtacggcagtcccaaagtggtaaatgatggagtcac 57038 Query: 363 cattgcccgtgctattgagctagctaacccaatggaaaatgccggtgcagctctgattcg 422 ||||||||| |||||||||||| | | || ||||||||||| |||||||| |||| || Sbjct: 57039 cattgcccgggctattgagctatatgatccgatggaaaatgctggtgcagcattgatccg 57098 Query: 423 tgaggt 428 |||||| Sbjct: 57099 tgaggt 57104
>gb|AY108560.1| Zea mays PCO140434 mRNA sequence Length = 2143 Score = 188 bits (95), Expect = 1e-44 Identities = 215/255 (84%) Strand = Plus / Plus Query: 207 cgccaaggagatcgccttcgaccagaagtcccgggccgcgctccaggccggcgtcgagaa 266 |||||||||||||||||| |||||| ||| | ||||| || ||||||||||||||||| Sbjct: 273 cgccaaggagatcgcctttgaccagggctccagagccgcccttcaggccggcgtcgagaa 332 Query: 267 gctcgccaacgccgtcggcgtcaccctcggcccgcgagggaggaatgtagtgctggatga 326 ||||||| ||| ||||||||||||||||| || |||| |||||||| || ||||||| Sbjct: 333 gctcgccgccgcggtcggcgtcaccctcggacccagaggaaggaatgttgtcttggatga 392 Query: 327 gcatggcaaccccaaagtggtgaacgatggtgttaccattgcccgtgctattgagctagc 386 | ||| | |||||||||||| || ||||| |||||||||||||| ||||||||||| || Sbjct: 393 gtttggaacccccaaagtggtcaatgatggagttaccattgcccgcgctattgagcttgc 452 Query: 387 taacccaatggaaaatgccggtgcagctctgattcgtgaggttgctagcaagactaatga 446 | | || ||||| ||||| ||||| | |||||||||| |||||||||||||| ||||| Sbjct: 453 tgatcccatggagaatgctggtgcttccttgattcgtgaagttgctagcaagacgaatga 512 Query: 447 ttctgctggtgatgg 461 || ||||||||||| Sbjct: 513 ctcggctggtgatgg 527
>dbj|AK119217.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E10, full insert sequence Length = 1543 Score = 141 bits (71), Expect = 3e-30 Identities = 101/111 (90%) Strand = Plus / Plus Query: 480 ccttgctcgagaaatcatcaagctgggcattctgagcgtaacttctggtgcaaaccctgt 539 ||||||||| |||||||||||||||||| || |||| ||||||||||||||||||||||| Sbjct: 1 ccttgctcgtgaaatcatcaagctgggccttttgagtgtaacttctggtgcaaaccctgt 60 Query: 540 atcactaaagaaaggaatcgacaaaactgtccagggtctgattgaagagct 590 |||||| ||||||||||| |||||||| || || ||||| ||||||||||| Sbjct: 61 atcacttaagaaaggaatagacaaaacagtgcatggtcttattgaagagct 111
>ref|NM_128359.3| Arabidopsis thaliana CPN60A; ATP binding / protein binding AT2G28000 (CPN60A) mRNA, complete cds Length = 2103 Score = 123 bits (62), Expect = 7e-25 Identities = 200/246 (81%) Strand = Plus / Plus Query: 346 gtgaacgatggtgttaccattgcccgtgctattgagctagctaacccaatggaaaatgcc 405 ||||| ||||| || |||||||| | ||||||||| || |||| | ||||||||||| Sbjct: 417 gtgaatgatggagtcaccattgctagagctattgagttacctaatgccatggaaaatgct 476 Query: 406 ggtgcagctctgattcgtgaggttgctagcaagactaatgattctgctggtgatgggact 465 |||||||| || |||||||||||||| || ||||||||||| ||||||||||||||||| Sbjct: 477 ggtgcagcgcttattcgtgaggttgcgagtaagactaatgactctgctggtgatgggaca 536 Query: 466 acgactgcttgtgtccttgctcgagaaatcatcaagctgggcattctgagcgtaacttct 525 || ||||| | | |||||||||| || || ||||| | || | ||||||| |||||| Sbjct: 537 accactgcgtctatccttgctcgggagataatcaaacatggattgttgagcgtcacttct 596 Query: 526 ggtgcaaaccctgtatcactaaagaaaggaatcgacaaaactgtccagggtctgattgaa 585 ||||| || || || ||||| |||| ||||| || || ||||| || |||||||| ||| Sbjct: 597 ggtgcgaatcccgtttcactcaagaggggaattgataagactgttcaaggtctgatcgaa 656 Query: 586 gagctt 591 |||||| Sbjct: 657 gagctt 662
>gb|BT008784.1| Arabidopsis thaliana At2g28000 gene, complete cds Length = 1761 Score = 123 bits (62), Expect = 7e-25 Identities = 200/246 (81%) Strand = Plus / Plus Query: 346 gtgaacgatggtgttaccattgcccgtgctattgagctagctaacccaatggaaaatgcc 405 ||||| ||||| || |||||||| | ||||||||| || |||| | ||||||||||| Sbjct: 280 gtgaatgatggagtcaccattgctagagctattgagttacctaatgccatggaaaatgct 339 Query: 406 ggtgcagctctgattcgtgaggttgctagcaagactaatgattctgctggtgatgggact 465 |||||||| || |||||||||||||| || ||||||||||| ||||||||||||||||| Sbjct: 340 ggtgcagcgcttattcgtgaggttgcgagtaagactaatgactctgctggtgatgggaca 399 Query: 466 acgactgcttgtgtccttgctcgagaaatcatcaagctgggcattctgagcgtaacttct 525 || ||||| | | |||||||||| || || ||||| | || | ||||||| |||||| Sbjct: 400 accactgcgtctatccttgctcgggagataatcaaacatggattgttgagcgtcacttct 459 Query: 526 ggtgcaaaccctgtatcactaaagaaaggaatcgacaaaactgtccagggtctgattgaa 585 ||||| || || || ||||| |||| ||||| || || ||||| || |||||||| ||| Sbjct: 460 ggtgcgaatcccgtttcactcaagaggggaattgataagactgttcaaggtctgatcgaa 519 Query: 586 gagctt 591 |||||| Sbjct: 520 gagctt 525
>gb|AY086555.1| Arabidopsis thaliana clone 25773 mRNA, complete sequence Length = 1996 Score = 123 bits (62), Expect = 7e-25 Identities = 200/246 (81%) Strand = Plus / Plus Query: 346 gtgaacgatggtgttaccattgcccgtgctattgagctagctaacccaatggaaaatgcc 405 ||||| ||||| || |||||||| | ||||||||| || |||| | ||||||||||| Sbjct: 357 gtgaatgatggagtcaccattgctagagctattgagttacctaatgccatggaaaatgct 416 Query: 406 ggtgcagctctgattcgtgaggttgctagcaagactaatgattctgctggtgatgggact 465 |||||||| || |||||||||||||| || ||||||||||| ||||||||||||||||| Sbjct: 417 ggtgcagcgcttattcgtgaggttgcgagtaagactaatgactctgctggtgatgggaca 476 Query: 466 acgactgcttgtgtccttgctcgagaaatcatcaagctgggcattctgagcgtaacttct 525 || ||||| | | |||||||||| || || ||||| | || | ||||||| |||||| Sbjct: 477 accactgcgtctatccttgctcgggagataatcaaacatggattgttgagcgtcacttct 536 Query: 526 ggtgcaaaccctgtatcactaaagaaaggaatcgacaaaactgtccagggtctgattgaa 585 ||||| || || || ||||| |||| ||||| || || ||||| || |||||||| ||| Sbjct: 537 ggtgcgaatcccgtttcactcaagaggggaattgataagactgttcaaggtctgatcgaa 596 Query: 586 gagctt 591 |||||| Sbjct: 597 gagctt 602
>gb|BT002441.1| Arabidopsis thaliana putative rubisco subunit binding-protein alpha subunit (At2g28000) mRNA, complete cds Length = 2020 Score = 123 bits (62), Expect = 7e-25 Identities = 200/246 (81%) Strand = Plus / Plus Query: 346 gtgaacgatggtgttaccattgcccgtgctattgagctagctaacccaatggaaaatgcc 405 ||||| ||||| || |||||||| | ||||||||| || |||| | ||||||||||| Sbjct: 362 gtgaatgatggagtcaccattgctagagctattgagttacctaatgccatggaaaatgct 421 Query: 406 ggtgcagctctgattcgtgaggttgctagcaagactaatgattctgctggtgatgggact 465 |||||||| || |||||||||||||| || ||||||||||| ||||||||||||||||| Sbjct: 422 ggtgcagcgcttattcgtgaggttgcgagtaagactaatgactctgctggtgatgggaca 481 Query: 466 acgactgcttgtgtccttgctcgagaaatcatcaagctgggcattctgagcgtaacttct 525 || ||||| | | |||||||||| || || ||||| | || | ||||||| |||||| Sbjct: 482 accactgcgtctatccttgctcgggagataatcaaacatggattgttgagcgtcacttct 541 Query: 526 ggtgcaaaccctgtatcactaaagaaaggaatcgacaaaactgtccagggtctgattgaa 585 ||||| || || || ||||| |||| ||||| || || ||||| || |||||||| ||| Sbjct: 542 ggtgcgaatcccgtttcactcaagaggggaattgataagactgttcaaggtctgatcgaa 601 Query: 586 gagctt 591 |||||| Sbjct: 602 gagctt 607
>gb|M35597.1|ATH60CPNA A.thaliana plastid 60-kDa chaperonin-60 alpha polypeptide (cpn-60 alpha) mRNA, partial cds Length = 735 Score = 123 bits (62), Expect = 7e-25 Identities = 200/246 (81%) Strand = Plus / Plus Query: 346 gtgaacgatggtgttaccattgcccgtgctattgagctagctaacccaatggaaaatgcc 405 ||||| ||||| || |||||||| | ||||||||| || |||| | ||||||||||| Sbjct: 82 gtgaatgatggagtcaccattgctagagctattgagttacctaatgccatggaaaatgct 141 Query: 406 ggtgcagctctgattcgtgaggttgctagcaagactaatgattctgctggtgatgggact 465 |||||||| || |||||||||||||| || ||||||||||| ||||||||||||||||| Sbjct: 142 ggtgcagcgcttattcgtgaggttgcgagtaagactaatgactctgctggtgatgggaca 201 Query: 466 acgactgcttgtgtccttgctcgagaaatcatcaagctgggcattctgagcgtaacttct 525 || ||||| | | |||||||||| || || ||||| | || | ||||||| |||||| Sbjct: 202 accactgcgtctatccttgctcgggagataatcaaacatggattgttgagcgtcacttct 261 Query: 526 ggtgcaaaccctgtatcactaaagaaaggaatcgacaaaactgtccagggtctgattgaa 585 ||||| || || || ||||| |||| ||||| || || ||||| || |||||||| ||| Sbjct: 262 ggtgcgaatcccgtttcactcaagaggggaattgataagactgttcaaggtctgatcgaa 321 Query: 586 gagctt 591 |||||| Sbjct: 322 gagctt 327
>dbj|AB049590.1| Avicennia marina chpa mRNA for chaperonin-60 alpha subunit, complete cds Length = 2059 Score = 107 bits (54), Expect = 4e-20 Identities = 96/110 (87%) Strand = Plus / Plus Query: 394 atggaaaatgccggtgcagctctgattcgtgaggttgctagcaagactaatgattctgct 453 ||||||||||| ||||| ||| | ||| | ||||||||||||||||| |||||||| ||| Sbjct: 412 atggaaaatgcgggtgctgctttaattagggaggttgctagcaagacaaatgattcagct 471 Query: 454 ggtgatgggactacgactgcttgtgtccttgctcgagaaatcatcaagct 503 |||||||||||||| ||||| | ||| |||||||| ||||| |||||||| Sbjct: 472 ggtgatgggactactactgcatctgttcttgctcgtgaaattatcaagct 521
>emb|BX819680.1|CNS0A9ZT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS16ZF10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2019 Score = 105 bits (53), Expect = 2e-19 Identities = 194/241 (80%) Strand = Plus / Plus Query: 346 gtgaacgatggtgttaccattgcccgtgctattgagctagctaacccaatggaaaatgcc 405 ||||| ||||| || |||||||| | ||||||||| || |||| | ||||||||||| Sbjct: 346 gtgaatgatggagtcaccattgctagagctattgagttacctaatgccatggaaaatgct 405 Query: 406 ggtgcagctctgattcgtgaggttgctagcaagactaatgattctgctggtgatgggact 465 |||||||| || |||||||||||||| || |||||||||| ||||||||||||||||| Sbjct: 406 ggtgcagcgcttattcgtgaggttgcgagtgagactaatgactctgctggtgatgggaca 465 Query: 466 acgactgcttgtgtccttgctcgagaaatcatcaagctgggcattctgagcgtaacttct 525 || ||||| | | |||||||||| || || ||||| | || | ||||||| |||||| Sbjct: 466 accactgcgtctatccttgctcgggagataatcaaacatggattgttgagcgtcacttct 525 Query: 526 ggtgcaaaccctgtatcactaaagaaaggaatcgacaaaactgtccagggtctgattgaa 585 ||||| || || || ||||| |||| ||||| || || ||||| || |||||||| ||| Sbjct: 526 ggtgcgaatcccgtttcactcaagaggggaattgataagactgttcaaggtctgatcgaa 585 Query: 586 g 586 | Sbjct: 586 g 586
>dbj|AB236850.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C580 Length = 1986 Score = 99.6 bits (50), Expect = 1e-17 Identities = 137/166 (82%) Strand = Plus / Plus Query: 302 gagggaggaatgtagtgctggatgagcatggcaaccccaaagtggtgaacgatggtgtta 361 ||||||||||||| ||| |||||||| ||| | || || || || || |||||||| | Sbjct: 290 gagggaggaatgttgtgttggatgagtttggtagtcctaaggtagttaatgatggtgtca 349 Query: 362 ccattgcccgtgctattgagctagctaacccaatggaaaatgccggtgcagctctgattc 421 | ||||| | |||||||||||| || | || ||||||||||| ||||||||||| ||| Sbjct: 350 caattgcaagagctattgagctacctgatcccatggaaaatgctggtgcagctcttatta 409 Query: 422 gtgaggttgctagcaagactaatgattctgctggtgatgggactac 467 | |||||||| || || |||||||| |||||||||||||||||||| Sbjct: 410 gggaggttgcaagtaaaactaatgactctgctggtgatgggactac 455
>gb|BT014158.1| Lycopersicon esculentum clone 133278F, mRNA sequence Length = 2098 Score = 97.6 bits (49), Expect = 4e-17 Identities = 229/289 (79%) Strand = Plus / Plus Query: 307 aggaatgtagtgctggatgagcatggcaaccccaaagtggtgaacgatggtgttaccatt 366 |||||||||||| ||||||| |||||| ||| || ||||| |||||||| ||||| ||| Sbjct: 313 aggaatgtagtgttggatgaatatggcacccctaaggtggttaacgatggagttacaatt 372 Query: 367 gcccgtgctattgagctagctaacccaatggaaaatgccggtgcagctctgattcgtgag 426 || ||||| || |||||| || | | ||||| ||||| || || || || || | ||| Sbjct: 373 gctcgtgccatcgagctacctgatgctatggagaatgctggggctgcccttatcagggag 432 Query: 427 gttgctagcaagactaatgattctgctggtgatgggactacgactgcttgtgtccttgct 486 ||||| ||||| || |||||||| ||||||||||| || || ||||| | ||| |||||| Sbjct: 433 gttgcaagcaaaaccaatgattcagctggtgatggaacaacaactgcatctgttcttgct 492 Query: 487 cgagaaatcatcaagctgggcattctgagcgtaacttctggtgcaaaccctgtatcacta 546 || |||||||| || || || | |||| || || ||||||||||| || || || || Sbjct: 493 cgggaaatcattaaactcggtctgttgagtgttacatctggtgcaaatccagtgtcttta 552 Query: 547 aagaaaggaatcgacaaaactgtccagggtctgattgaagagcttgaaa 595 |||| || || ||||||||||| | |||| ||||||||||||| |||| Sbjct: 553 aagaggggcattgacaaaactgtactgggtttgattgaagagctagaaa 601
>dbj|AB236859.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C766 Length = 1971 Score = 95.6 bits (48), Expect = 2e-16 Identities = 99/116 (85%) Strand = Plus / Plus Query: 352 gatggtgttaccattgcccgtgctattgagctagctaacccaatggaaaatgccggtgca 411 |||||||| || ||||| | |||||||||||| || | || ||||||||||| |||||| Sbjct: 318 gatggtgtcacaattgcaagagctattgagctacctgatcccatggaaaatgctggtgca 377 Query: 412 gctctgattcgtgaggttgctagcaagactaatgattctgctggtgatgggactac 467 ||||| ||| | |||||||| || || |||||||| |||||||||||||||||||| Sbjct: 378 gctcttattagggaggttgcaagtaaaactaatgactctgctggtgatgggactac 433
>dbj|AB236844.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C447 Length = 1999 Score = 95.6 bits (48), Expect = 2e-16 Identities = 99/116 (85%) Strand = Plus / Plus Query: 352 gatggtgttaccattgcccgtgctattgagctagctaacccaatggaaaatgccggtgca 411 |||||||| || ||||| | |||||||||||| || | || ||||||||||| |||||| Sbjct: 336 gatggtgtcacaattgcaagagctattgagctacctgatcccatggaaaatgctggtgca 395 Query: 412 gctctgattcgtgaggttgctagcaagactaatgattctgctggtgatgggactac 467 ||||| ||| | |||||||| || || |||||||| |||||||||||||||||||| Sbjct: 396 gctcttattagggaggttgcaagtaaaactaatgactctgctggtgatgggactac 451
>dbj|AB236783.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C1772 Length = 2038 Score = 95.6 bits (48), Expect = 2e-16 Identities = 99/116 (85%) Strand = Plus / Plus Query: 352 gatggtgttaccattgcccgtgctattgagctagctaacccaatggaaaatgccggtgca 411 |||||||| || ||||| | |||||||||||| || | || ||||||||||| |||||| Sbjct: 328 gatggtgtcacaattgcaagagctattgagctacctgatcccatggaaaatgctggtgca 387 Query: 412 gctctgattcgtgaggttgctagcaagactaatgattctgctggtgatgggactac 467 ||||| ||| | |||||||| || || |||||||| |||||||||||||||||||| Sbjct: 388 gctcttattagggaggttgcaagtaaaactaatgactctgctggtgatgggactac 443
>dbj|AB236779.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, complete cds, clone: C1724 Length = 1982 Score = 95.6 bits (48), Expect = 2e-16 Identities = 99/116 (85%) Strand = Plus / Plus Query: 352 gatggtgttaccattgcccgtgctattgagctagctaacccaatggaaaatgccggtgca 411 |||||||| || ||||| | |||||||||||| || | || ||||||||||| |||||| Sbjct: 320 gatggtgtcacaattgcaagagctattgagctacctgatcccatggaaaatgctggtgca 379 Query: 412 gctctgattcgtgaggttgctagcaagactaatgattctgctggtgatgggactac 467 ||||| ||| | |||||||| || || |||||||| |||||||||||||||||||| Sbjct: 380 gctcttattagggaggttgcaagtaaaactaatgactctgctggtgatgggactac 435
>dbj|AB236775.1| Trifolium pratense RNA for putative rubisco subunit binding-protein alpha subunit, partial cds, clone: C1598 Length = 2018 Score = 95.6 bits (48), Expect = 2e-16 Identities = 99/116 (85%) Strand = Plus / Plus Query: 352 gatggtgttaccattgcccgtgctattgagctagctaacccaatggaaaatgccggtgca 411 |||||||| || ||||| | |||||||||||| || | || ||||||||||| |||||| Sbjct: 264 gatggtgtcacaattgcaagagctattgagctacctgatcccatggaaaatgctggtgca 323 Query: 412 gctctgattcgtgaggttgctagcaagactaatgattctgctggtgatgggactac 467 ||||| ||| | |||||||| || || |||||||| |||||||||||||||||||| Sbjct: 324 gctcttattagggaggttgcaagtaaaactaatgactctgctggtgatgggactac 379
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 91.7 bits (46), Expect = 3e-15 Identities = 79/90 (87%) Strand = Plus / Minus Query: 207 cgccaaggagatcgccttcgaccagaagtcccgggccgcgctccaggccggcgtcgagaa 266 ||||||||||||||||||||||||| || || || | |||||||||||||||||||| Sbjct: 35980644 cgccaaggagatcgccttcgaccagggatcgcgatcctccctccaggccggcgtcgagaa 35980585 Query: 267 gctcgccaacgccgtcggcgtcaccctcgg 296 ||||||| |||||||| |||||||||||| Sbjct: 35980584 gctcgccgccgccgtcgccgtcaccctcgg 35980555 Score = 89.7 bits (45), Expect = 1e-14 Identities = 81/93 (87%) Strand = Plus / Minus Query: 336 ccccaaagtggtgaacgatggtgttaccattgcccgtgctattgagctagctaacccaat 395 |||||||||||| || || || ||||||||||| || ||||||||||| ||| | ||||| Sbjct: 35980355 ccccaaagtggtcaatgacggagttaccattgctcgagctattgagctcgctgatccaat 35980296 Query: 396 ggaaaatgccggtgcagctctgattcgtgaggt 428 ||| ||||||||||| ||| ||||||||||||| Sbjct: 35980295 ggagaatgccggtgctgctttgattcgtgaggt 35980263 Score = 60.0 bits (30), Expect = 9e-06 Identities = 96/118 (81%) Strand = Plus / Minus Query: 425 aggttgctagcaagactaatgattctgctggtgatgggactacgactgcttgtgtccttg 484 ||||||| |||||||| ||||| || || |||||||||||||| || || | |||||| | Sbjct: 35980124 aggttgccagcaagacaaatgactcagcaggtgatgggactacaaccgcatctgtcctgg 35980065 Query: 485 ctcgagaaatcatcaagctgggcattctgagcgtaacttctggtgcaaaccctgtatc 542 |||| || ||||| || ||||| | ||||| || ||||| || |||||||| ||||| Sbjct: 35980064 ctcgtgagatcataaaattgggcctgctgagtgttacttcaggggcaaacccagtatc 35980007 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 ccatctccaccgcctccctcctcc 133 ||||||||||||||||| |||||| Sbjct: 21715732 ccatctccaccgcctccttcctcc 21715755
>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence Length = 164179 Score = 91.7 bits (46), Expect = 3e-15 Identities = 79/90 (87%) Strand = Plus / Minus Query: 207 cgccaaggagatcgccttcgaccagaagtcccgggccgcgctccaggccggcgtcgagaa 266 ||||||||||||||||||||||||| || || || | |||||||||||||||||||| Sbjct: 42155 cgccaaggagatcgccttcgaccagggatcgcgatcctccctccaggccggcgtcgagaa 42096 Query: 267 gctcgccaacgccgtcggcgtcaccctcgg 296 ||||||| |||||||| |||||||||||| Sbjct: 42095 gctcgccgccgccgtcgccgtcaccctcgg 42066 Score = 89.7 bits (45), Expect = 1e-14 Identities = 81/93 (87%) Strand = Plus / Minus Query: 336 ccccaaagtggtgaacgatggtgttaccattgcccgtgctattgagctagctaacccaat 395 |||||||||||| || || || ||||||||||| || ||||||||||| ||| | ||||| Sbjct: 41866 ccccaaagtggtcaatgacggagttaccattgctcgagctattgagctcgctgatccaat 41807 Query: 396 ggaaaatgccggtgcagctctgattcgtgaggt 428 ||| ||||||||||| ||| ||||||||||||| Sbjct: 41806 ggagaatgccggtgctgctttgattcgtgaggt 41774 Score = 60.0 bits (30), Expect = 9e-06 Identities = 96/118 (81%) Strand = Plus / Minus Query: 425 aggttgctagcaagactaatgattctgctggtgatgggactacgactgcttgtgtccttg 484 ||||||| |||||||| ||||| || || |||||||||||||| || || | |||||| | Sbjct: 41635 aggttgccagcaagacaaatgactcagcaggtgatgggactacaaccgcatctgtcctgg 41576 Query: 485 ctcgagaaatcatcaagctgggcattctgagcgtaacttctggtgcaaaccctgtatc 542 |||| || ||||| || ||||| | ||||| || ||||| || |||||||| ||||| Sbjct: 41575 ctcgtgagatcataaaattgggcctgctgagtgttacttcaggggcaaacccagtatc 41518
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 91.7 bits (46), Expect = 3e-15 Identities = 79/90 (87%) Strand = Plus / Minus Query: 207 cgccaaggagatcgccttcgaccagaagtcccgggccgcgctccaggccggcgtcgagaa 266 ||||||||||||||||||||||||| || || || | |||||||||||||||||||| Sbjct: 36070718 cgccaaggagatcgccttcgaccagggatcgcgatcctccctccaggccggcgtcgagaa 36070659 Query: 267 gctcgccaacgccgtcggcgtcaccctcgg 296 ||||||| |||||||| |||||||||||| Sbjct: 36070658 gctcgccgccgccgtcgccgtcaccctcgg 36070629 Score = 89.7 bits (45), Expect = 1e-14 Identities = 81/93 (87%) Strand = Plus / Minus Query: 336 ccccaaagtggtgaacgatggtgttaccattgcccgtgctattgagctagctaacccaat 395 |||||||||||| || || || ||||||||||| || ||||||||||| ||| | ||||| Sbjct: 36070429 ccccaaagtggtcaatgacggagttaccattgctcgagctattgagctcgctgatccaat 36070370 Query: 396 ggaaaatgccggtgcagctctgattcgtgaggt 428 ||| ||||||||||| ||| ||||||||||||| Sbjct: 36070369 ggagaatgccggtgctgctttgattcgtgaggt 36070337 Score = 60.0 bits (30), Expect = 9e-06 Identities = 96/118 (81%) Strand = Plus / Minus Query: 425 aggttgctagcaagactaatgattctgctggtgatgggactacgactgcttgtgtccttg 484 ||||||| |||||||| ||||| || || |||||||||||||| || || | |||||| | Sbjct: 36070198 aggttgccagcaagacaaatgactcagcaggtgatgggactacaaccgcatctgtcctgg 36070139 Query: 485 ctcgagaaatcatcaagctgggcattctgagcgtaacttctggtgcaaaccctgtatc 542 |||| || ||||| || ||||| | ||||| || ||||| || |||||||| ||||| Sbjct: 36070138 ctcgtgagatcataaaattgggcctgctgagtgttacttcaggggcaaacccagtatc 36070081 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 ccatctccaccgcctccctcctcc 133 ||||||||||||||||| |||||| Sbjct: 21708761 ccatctccaccgcctccttcctcc 21708784
>gb|AF030515.1|AF030515 Canavalia lineata chaperonin 60 alpha subunit mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 2040 Score = 91.7 bits (46), Expect = 3e-15 Identities = 193/242 (79%) Strand = Plus / Plus Query: 352 gatggtgttaccattgcccgtgctattgagctagctaacccaatggaaaatgccggtgca 411 |||||||| |||||||| || ||||||||||| | | | ||||||||||| |||||| Sbjct: 359 gatggtgtgaccattgctcgagctattgagcttccggatgccatggaaaatgctggtgca 418 Query: 412 gctctgattcgtgaggttgctagcaagactaatgattctgctggtgatgggactacgact 471 ||||| ||| | ||||||||||| || || ||||| |||||||| |||||||| || || Sbjct: 419 gctctcattagggaggttgctagtaaaaccaatgactctgctggggatgggacaaccacg 478 Query: 472 gcttgtgtccttgctcgagaaatcatcaagctgggcattctgagcgtaacttctggtgca 531 |||| ||| |||||||| || || || ||||| || |||| || || || |||||||| Sbjct: 479 gcttctgttcttgctcgggagataattaagcttgggcttctcagtgtgacctctggtgcc 538 Query: 532 aaccctgtatcactaaagaaaggaatcgacaaaactgtccagggtctgattgaagagctt 591 || ||||| || || |||| ||| || || |||||||| |||||| || | || |||||| Sbjct: 539 aatcctgtttctctcaagagagggattgataaaactgtgcagggtttggtggaggagctt 598 Query: 592 ga 593 || Sbjct: 599 ga 600
>emb|Z27222.1|BNPLCAS B.napus mRNA for plastid chaperonin-60 alpha subunit Length = 1975 Score = 87.7 bits (44), Expect = 4e-14 Identities = 230/292 (78%) Strand = Plus / Plus Query: 302 gagggaggaatgtagtgctggatgagcatggcaaccccaaagtggtgaacgatggtgtta 361 ||||||||||||| ||| |||||||| ||| | |||||| || ||||||||||| || | Sbjct: 286 gagggaggaatgttgtgttggatgagtttggtagccccaaggttgtgaacgatggagtca 345 Query: 362 ccattgcccgtgctattgagctagctaacccaatggaaaatgccggtgcagctctgattc 421 |||| || | || |||||| || || || | ||||| || || |||||||| || || | Sbjct: 346 ccatcgctagggccattgagttacctgacgccatggagaacgctggtgcagcactcatcc 405 Query: 422 gtgaggttgctagcaagactaatgattctgctggtgatgggactacgactgcttgtgtcc 481 | |||||||| || ||||||||||| || ||||| || ||||| || ||||||| |||| Sbjct: 406 gcgaggttgcgagtaagactaatgactcagctggcgacgggacaacaactgcttccgtcc 465 Query: 482 ttgctcgagaaatcatcaagctgggcattctgagcgtaacttctggtgcaaaccctgtat 541 | ||||| ||||||||||| | || | ||||||| ||||| || || || ||||| | Sbjct: 466 tggctcgggaaatcatcaaacacggtctgttgagcgtcacttccggcgccaatcctgtct 525 Query: 542 cactaaagaaaggaatcgacaaaactgtccagggtctgattgaagagcttga 593 | || |||| |||||||||||| || || || | | |||| ||||||||||| Sbjct: 526 ccctcaagagaggaatcgacaagaccgttcaagctttgatagaagagcttga 577
>gb|M35599.1|BNA60CPNA B.napus plastid 60-kDa chaperonin-60 alpha-polypeptide (cpn-60 alpha) mRNA, 3' end Length = 1789 Score = 87.7 bits (44), Expect = 4e-14 Identities = 215/272 (79%) Strand = Plus / Plus Query: 289 accctcggcccgcgagggaggaatgtagtgctggatgagcatggcaaccccaaagtggtg 348 ||||| ||||| ||||||| ||||| ||| |||||||| ||| | ||||| || ||| Sbjct: 105 acccttggccctagagggagaaatgttgtgttggatgagtttggaagtcccaaggtcgtg 164 Query: 349 aacgatggtgttaccattgcccgtgctattgagctagctaacccaatggaaaatgccggt 408 || ||||| || |||||||| | || |||||| || || || | ||||| ||||| ||| Sbjct: 165 aatgatggagtcaccattgctagggccattgagttacctgacgctatggagaatgctggt 224 Query: 409 gcagctctgattcgtgaggttgctagcaagactaatgattctgctggtgatgggactacg 468 ||||| || || |||||||||||||| ||||||||||| || |||||||| || || || Sbjct: 225 gcagcacttatccgtgaggttgctagtaagactaatgactcagctggtgacggcacaacc 284 Query: 469 actgcttgtgtccttgctcgagaaatcatcaagctgggcattctgagcgtaacttctggt 528 ||||| | ||||||||||| || || ||||| | ||| | || ||||| ||||| ||| Sbjct: 285 actgcctccgtccttgctcgggagataatcaaacacggcttactaagcgtcacttccggt 344 Query: 529 gcaaaccctgtatcactaaagaaaggaatcga 560 || || || || ||||| |||| ||||||||| Sbjct: 345 gccaatccagtctcactcaagagaggaatcga 376
>gb|AC006929.4| Arabidopsis thaliana chromosome 2 clone T1E2 map mi54, complete sequence Length = 94884 Score = 77.8 bits (39), Expect = 4e-11 Identities = 135/167 (80%) Strand = Plus / Minus Query: 425 aggttgctagcaagactaatgattctgctggtgatgggactacgactgcttgtgtccttg 484 ||||||| || ||||||||||| ||||||||||||||||| || ||||| | | |||||| Sbjct: 33574 aggttgcgagtaagactaatgactctgctggtgatgggacaaccactgcgtctatccttg 33515 Query: 485 ctcgagaaatcatcaagctgggcattctgagcgtaacttctggtgcaaaccctgtatcac 544 |||| || || ||||| | || | ||||||| ||||||||||| || || || |||| Sbjct: 33514 ctcgggagataatcaaacatggattgttgagcgtcacttctggtgcgaatcccgtttcac 33455 Query: 545 taaagaaaggaatcgacaaaactgtccagggtctgattgaagagctt 591 | |||| ||||| || || ||||| || |||||||| ||||||||| Sbjct: 33454 tcaagaggggaattgataagactgttcaaggtctgatcgaagagctt 33408 Score = 58.0 bits (29), Expect = 4e-05 Identities = 71/85 (83%) Strand = Plus / Minus Query: 346 gtgaacgatggtgttaccattgcccgtgctattgagctagctaacccaatggaaaatgcc 405 ||||| ||||| || |||||||| | ||||||||| || |||| | ||||||||||| Sbjct: 33727 gtgaatgatggagtcaccattgctagagctattgagttacctaatgccatggaaaatgct 33668 Query: 406 ggtgcagctctgattcgtgaggttg 430 |||||||| || ||||||||||||| Sbjct: 33667 ggtgcagcgcttattcgtgaggttg 33643
>gb|U49357.1|ATU49357 Arabidopsis thaliana chaperonin-60 alpha subunit gene, nuclear gene encoding plastid protein, complete cds Length = 4365 Score = 77.8 bits (39), Expect = 4e-11 Identities = 135/167 (80%) Strand = Plus / Plus Query: 425 aggttgctagcaagactaatgattctgctggtgatgggactacgactgcttgtgtccttg 484 ||||||| || ||||||||||| ||||||||||||||||| || ||||| | | |||||| Sbjct: 1499 aggttgcgagtaagactaatgactctgctggtgatgggacaaccactgcgtctatccttg 1558 Query: 485 ctcgagaaatcatcaagctgggcattctgagcgtaacttctggtgcaaaccctgtatcac 544 |||| || || ||||| | || | ||||||| ||||||||||| || || || |||| Sbjct: 1559 ctcgggagataatcaaacatggattgttgagcgtcacttctggtgcgaatcccgtttcac 1618 Query: 545 taaagaaaggaatcgacaaaactgtccagggtctgattgaagagctt 591 | |||| ||||| || || ||||| || |||||||| ||||||||| Sbjct: 1619 tcaagaggggaattgataagactgttcaaggtctgatcgaagagctt 1665 Score = 58.0 bits (29), Expect = 4e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 346 gtgaacgatggtgttaccattgcccgtgctattgagctagctaacccaatggaaaatgcc 405 ||||| ||||| || |||||||| | ||||||||| || |||| | ||||||||||| Sbjct: 1346 gtgaatgatggagtcaccattgctagagctattgagttacctaatgccatggaaaatgct 1405 Query: 406 ggtgcagctctgattcgtgaggttg 430 |||||||| || ||||||||||||| Sbjct: 1406 ggtgcagcgcttattcgtgaggttg 1430
>gb|U21105.1|PSU21105 Pisum sativum alphacpn60 precursor (alphacpn60) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1977 Score = 67.9 bits (34), Expect = 4e-08 Identities = 133/166 (80%) Strand = Plus / Plus Query: 302 gagggaggaatgtagtgctggatgagcatggcaaccccaaagtggtgaacgatggtgtta 361 ||||||||||||| ||| |||||||| ||| | || || || || || |||||||| | Sbjct: 269 gagggaggaatgttgtgttggatgagtttggaagtcctaaggtagttaatgatggtgtga 328 Query: 362 ccattgcccgtgctattgagctagctaacccaatggaaaatgccggtgcagctctgattc 421 | ||||| | ||||||||||| || | || ||||||||||| ||||||||||| || Sbjct: 329 caattgcaagagctattgagcttcctgatcccatggaaaatgctggtgcagctcttataa 388 Query: 422 gtgaggttgctagcaagactaatgattctgctggtgatgggactac 467 | |||||||| || || |||||||| |||||||| || |||||||| Sbjct: 389 gggaggttgcaagtaaaactaatgactctgctggcgacgggactac 434
>emb|X07852.1|RCRSBA Castor-bean mRNA for Rubisco subunit binding-protein alpha subunit Length = 1488 Score = 61.9 bits (31), Expect = 2e-06 Identities = 106/131 (80%) Strand = Plus / Plus Query: 364 attgcccgtgctattgagctagctaacccaatggaaaatgccggtgcagctctgattcgt 423 |||||||| || |||||| || || | || ||||| ||||| |||||||||||||| | Sbjct: 128 attgcccgagcaattgagttacctgatcccatggagaatgctggtgcagctctgataaga 187 Query: 424 gaggttgctagcaagactaatgattctgctggtgatgggactacgactgcttgtgtcctt 483 ||||| || || || |||||||| |||||||||||||| || || ||||| | |||||| Sbjct: 188 gaggtcgcaagtaaaactaatgactctgctggtgatggaacgacaactgcatcagtcctt 247 Query: 484 gctcgagaaat 494 || || ||||| Sbjct: 248 gcacgggaaat 258
>emb|X55394.3|MTMMOCLU Methylosinus trichosporium gene cluster for methane monooxygenase (MMO) with mmoR, mmoG, mmoX, mmoY, mmoB, mmoZ mmoD and mmoC genes Length = 10144 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 253 gccggcgtcgagaagctcgccaacgccgtcggcgtcaccctcggcccgcg 302 ||||||||||| ||||||| ||||||||| |||||| ||||||||||| Sbjct: 2629 gccggcgtcgatgcgctcgccgacgccgtcgccgtcacgctcggcccgcg 2678
>ref|XM_463795.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2155 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 435 caagactaatgattctgctggtgatgggactacgactgcttgtgtccttgctc 487 |||||| ||||||| |||||||||||||| |||||| || ||||||||||| Sbjct: 488 caagacaaatgatttggctggtgatgggacaacgacttctgttgtccttgctc 540
>ref|XM_506674.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1435_F07.26 mRNA Length = 2310 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 435 caagactaatgattctgctggtgatgggactacgactgcttgtgtccttgctc 487 |||||| ||||||| |||||||||||||| |||||| || ||||||||||| Sbjct: 508 caagacaaatgatttggctggtgatgggacaacgacttctgttgtccttgctc 560
>gb|AY334432.1| Candidatus Blochmannia sansabeanus isolate Csans04 heat shock protein (groEL) gene, partial cds Length = 1716 Score = 50.1 bits (25), Expect = 0.009 Identities = 31/33 (93%) Strand = Plus / Plus Query: 442 aatgattctgctggtgatgggactacgactgct 474 ||||||||||| |||||||||||||| |||||| Sbjct: 328 aatgattctgcaggtgatgggactactactgct 360
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 435 caagactaatgattctgctggtgatgggactacgactgcttgtgtccttgctc 487 |||||| ||||||| |||||||||||||| |||||| || ||||||||||| Sbjct: 160260 caagacaaatgatttggctggtgatgggacaacgacttctgttgtccttgctc 160312
>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1435_F07 Length = 139041 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 435 caagactaatgattctgctggtgatgggactacgactgcttgtgtccttgctc 487 |||||| ||||||| |||||||||||||| |||||| || ||||||||||| Sbjct: 109287 caagacaaatgatttggctggtgatgggacaacgacttctgttgtccttgctc 109339
>dbj|AK101537.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048E22, full insert sequence Length = 2154 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 435 caagactaatgattctgctggtgatgggactacgactgcttgtgtccttgctc 487 |||||| ||||||| |||||||||||||| |||||| || ||||||||||| Sbjct: 487 caagacaaatgatttggctggtgatgggacaacgacttctgttgtccttgctc 539
>dbj|AK070603.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023059D06, full insert sequence Length = 2310 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Plus Query: 435 caagactaatgattctgctggtgatgggactacgactgcttgtgtccttgctc 487 |||||| ||||||| |||||||||||||| |||||| || ||||||||||| Sbjct: 508 caagacaaatgatttggctggtgatgggacaacgacttctgttgtccttgctc 560
>gb|AY334439.1| Candidatus Blochmannia vicinus isolate Cvici17 heat shock protein (groEL) gene, partial cds Length = 1591 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Plus Query: 442 aatgattctgctggtgatgggactacgactgc 473 ||||||||||| |||||||| ||||||||||| Sbjct: 288 aatgattctgcaggtgatggaactacgactgc 319
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 48.1 bits (24), Expect = 0.034 Identities = 24/24 (100%) Strand = Plus / Minus Query: 279 cgtcggcgtcaccctcggcccgcg 302 |||||||||||||||||||||||| Sbjct: 1658062 cgtcggcgtcaccctcggcccgcg 1658039
>gb|AC068533.7| Homo sapiens PAC clone RP5-1132H15 from 7, complete sequence Length = 140974 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 126 cctcctccgctccttctcctccc 148 ||||||||||||||||||||||| Sbjct: 59307 cctcctccgctccttctcctccc 59329 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 126 cctcctccgctccttctcctccc 148 ||||||||||||||||||||||| Sbjct: 59173 cctcctccgctccttctcctccc 59195
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 95 tggcgtcggccaacgccatctcc 117 ||||||||||||||||||||||| Sbjct: 291526 tggcgtcggccaacgccatctcc 291548
>gb|U59320.1|LMU59320 Leishmania major heat shock protein 60 (hsp60) gene, complete cds Length = 3477 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 253 gccggcgtcgagaagctcgccaacgccgtcggcgtcaccctcggccc 299 |||||||||||||| || | ||| |||||||||||||| || ||||| Sbjct: 1798 gccggcgtcgagaaccttgtcaaggccgtcggcgtcacgctgggccc 1844
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 243 cgcgctccaggccggcgtcgag 264 |||||||||||||||||||||| Sbjct: 93298 cgcgctccaggccggcgtcgag 93277
>ref|XM_849526.1| PREDICTED: Canis familiaris similar to double C2, gamma (predicted) (LOC611813), mRNA Length = 1335 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Minus Query: 16 ctcctcccctgctgcctccaccttatcctc 45 |||||||||||| |||||||||| |||||| Sbjct: 729 ctcctcccctgccgcctccacctcatcctc 700
>gb|AC095044.3| Homo sapiens BAC clone RP11-132B16 from 7, complete sequence Length = 134184 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 12 ctccctcctcccctgctgcctccacc 37 |||||||||||||||||||| ||||| Sbjct: 131182 ctccctcctcccctgctgccaccacc 131157
>emb|AL133293.28| Human DNA sequence from clone RP5-823N20 on chromosome 20 Contains the 5' end of the SRC gene for v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog, the RPL7AL4 gene for ribosomal protein L7A-like 4 (pseudogene) and a CpG island, complete sequence Length = 68662 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 120 cgcctccctcctccgctccttctcct 145 ||||||||||||| |||||||||||| Sbjct: 47037 cgcctccctcctcagctccttctcct 47012
>emb|BX883042.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 1/11 Length = 348780 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 12 ctccctcctcccctgctgcctccacc 37 ||||||||||||||||| |||||||| Sbjct: 108848 ctccctcctcccctgctccctccacc 108873
>gb|AC011998.8| Homo sapiens BAC clone RP11-318F5 from 2, complete sequence Length = 175951 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 315 agtgctggatgagcatggcaac 336 |||||||||||||||||||||| Sbjct: 167880 agtgctggatgagcatggcaac 167901
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 183 gtcgcggctggtggtgcgcgcggac 207 ||||||||| ||||||||||||||| Sbjct: 216524 gtcgcggctcgtggtgcgcgcggac 216548
>gb|AC159972.5| Mus musculus chromosome 1, clone RP23-35D23, complete sequence Length = 199094 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 123 ctccctcctccgctccttctcctcc 147 ||||||||||||||||| ||||||| Sbjct: 157437 ctccctcctccgctcctgctcctcc 157413
>gb|BC055915.1| Mus musculus centrosome and spindle pole associated protein 1, mRNA (cDNA clone IMAGE:3993429), partial cds Length = 2081 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 123 ctccctcctccgctccttctcctcc 147 ||||||||||||||||| ||||||| Sbjct: 133 ctccctcctccgctcctgctcctcc 109
>gb|AY691264.1| Lactobacillus intestinalis 60 kDa chaperonin (cpn60) gene, partial cds Length = 552 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 516 cgtaacttctggtgcaaaccctgta 540 ||||||| ||||||||||||||||| Sbjct: 45 cgtaactgctggtgcaaaccctgta 69
>gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_B02, complete sequence Length = 99795 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 258 cgtcgagaagctcgccaacgc 278 ||||||||||||||||||||| Sbjct: 46092 cgtcgagaagctcgccaacgc 46112
>gb|AY334445.1| Candidatus Blochmannia americanus isolate Camer00 heat shock protein (groEL) gene, partial cds Length = 1589 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 442 aatgattctgctggtgatgggactacgactgct 474 ||||||||||| ||||| |||||||| |||||| Sbjct: 278 aatgattctgcgggtgacgggactactactgct 310
>gb|AY334438.1| Candidatus Blochmannia schaefferi isolate Cscha16 heat shock protein (groEL) gene, partial cds Length = 1540 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 442 aatgattctgctggtgatgggactacgactgct 474 ||||| |||||||||||||| ||||| |||||| Sbjct: 258 aatgactctgctggtgatggcactactactgct 290
>gb|AY334436.1| Candidatus Blochmannia festinatus isolate Cfest14 heat shock protein (groEL) gene, partial cds Length = 1652 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 442 aatgattctgctggtgatgggactacgactgct 474 |||||||||||||| ||||| ||||| |||||| Sbjct: 290 aatgattctgctggggatggtactacaactgct 322
>gb|AY334433.1| Candidatus Blochmannia vafer isolate Cvafe10 heat shock protein (groEL) gene, partial cds Length = 1598 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 442 aatgattctgctggtgatgggactacgactgct 474 |||||||||||||| ||||| ||||| |||||| Sbjct: 288 aatgattctgctggggatggtactactactgct 320
>ref|XM_985768.1| PREDICTED: Mus musculus centrosome and spindle pole associated protein 1 (Cspp1), mRNA Length = 4136 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 123 ctccctcctccgctccttctcctcc 147 ||||||||||||||||| ||||||| Sbjct: 2211 ctccctcctccgctcctgctcctcc 2187
>ref|XM_913097.2| PREDICTED: Mus musculus centrosome and spindle pole associated protein 1 (Cspp1), mRNA Length = 4136 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 123 ctccctcctccgctccttctcctcc 147 ||||||||||||||||| ||||||| Sbjct: 2211 ctccctcctccgctcctgctcctcc 2187
>ref|XM_129366.7| PREDICTED: Mus musculus centrosome and spindle pole associated protein 1 (Cspp1), mRNA Length = 4136 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 123 ctccctcctccgctccttctcctcc 147 ||||||||||||||||| ||||||| Sbjct: 2211 ctccctcctccgctcctgctcctcc 2187
>ref|XM_756651.1| Ustilago maydis 521 hypothetical protein (UM05597.1) partial mRNA Length = 2997 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 576 tctgattgaagagcttgaaag 596 ||||||||||||||||||||| Sbjct: 649 tctgattgaagagcttgaaag 629
>emb|AL590663.13| Human DNA sequence from clone RP11-11M11 on chromosome 6, complete sequence Length = 56954 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 13 tccctcctcccctgctgcctccacc 37 |||||||||||||||| |||||||| Sbjct: 351 tccctcctcccctgctacctccacc 327
>emb|AL590426.6| Human DNA sequence from clone RP11-354K4 on chromosome 6 Contains novel pseudogene, complete sequence Length = 204235 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 13 tccctcctcccctgctgcctccacc 37 |||||||||||||||| |||||||| Sbjct: 202586 tccctcctcccctgctacctccacc 202562
>emb|AL354796.21| Human DNA sequence from clone RP11-145E17 on chromosome 9 Contains the 5'end of a novel gene (FLJ00318), a novel gene and two CpG islands, complete sequence Length = 156466 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 ctccgcccccagcctccaatg 96 ||||||||||||||||||||| Sbjct: 33705 ctccgcccccagcctccaatg 33725
>emb|AL033534.1|SPBC215 S.pombe chromosome II cosmid c215 Length = 37777 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 575 gtctgattgaagagcttgaaagaaa 599 |||||||| |||||||||||||||| Sbjct: 4508 gtctgattcaagagcttgaaagaaa 4484
>dbj|AB231904.1| Megacopta punctatissima symbiont gene for GroEL protein, partial cds Length = 1638 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 442 aatgattctgctggtgatgggactacgactgct 474 |||||| ||||||||||||| ||||| |||||| Sbjct: 244 aatgatgctgctggtgatggaactactactgct 276
>gb|AF451889.1| Actinomadura rubrobrunea strain IFO 14622 HSP70 gene, partial cds Length = 876 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 gccgcgctccaggccggcgtc 261 ||||||||||||||||||||| Sbjct: 577 gccgcgctccaggccggcgtc 597
>gb|AF451888.1| Actinocorallia herbida strain IFO 15485 HSP70 gene, partial cds Length = 1224 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 gccgcgctccaggccggcgtc 261 ||||||||||||||||||||| Sbjct: 925 gccgcgctccaggccggcgtc 945
>ref|NM_001022603.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC215.03c), partial mRNA Length = 1269 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 575 gtctgattgaagagcttgaaagaaa 599 |||||||| |||||||||||||||| Sbjct: 728 gtctgattcaagagcttgaaagaaa 752
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 258 cgtcgagaagctcgccaacgc 278 ||||||||||||||||||||| Sbjct: 24443419 cgtcgagaagctcgccaacgc 24443439 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 119 ccgcctccctcctccgctccttctcctcc 147 ||||||||||||||||| ||| ||||||| Sbjct: 4879632 ccgcctccctcctccgcccctcctcctcc 4879604 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ccaccgcctccctcctccgc 135 |||||||||||||||||||| Sbjct: 16837791 ccaccgcctccctcctccgc 16837810
>gb|AF314169.1|AF314169 Schizosaccharomyces pombe signalosome subunit Csn1 gene, complete cds Length = 3297 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 575 gtctgattgaagagcttgaaagaaa 599 |||||||| |||||||||||||||| Sbjct: 1497 gtctgattcaagagcttgaaagaaa 1521
>ref|XM_342793.2| PREDICTED: Rattus norvegicus similar to hypothetical protein FLJ22490 (predicted) (LOC362472), mRNA Length = 2394 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 123 ctccctcctccgctccttctcctcc 147 ||||||||||||||||| ||||||| Sbjct: 1089 ctccctcctccgctcctgctcctcc 1065
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 516 cgtaacttctggtgcaaaccc 536 ||||||||||||||||||||| Sbjct: 690531 cgtaacttctggtgcaaaccc 690551
>dbj|AK068896.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170E20, full insert sequence Length = 1409 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 258 cgtcgagaagctcgccaacgc 278 ||||||||||||||||||||| Sbjct: 1042 cgtcgagaagctcgccaacgc 1062
>dbj|AK059489.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-G10, full insert sequence Length = 1492 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 258 cgtcgagaagctcgccaacgc 278 ||||||||||||||||||||| Sbjct: 1181 cgtcgagaagctcgccaacgc 1201
>emb|Z83115.1|CEK11D2 Caenorhabditis elegans Cosmid K11D2, complete sequence Length = 26806 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 119 ccgcctccctcctccgctccttctcctcc 147 |||||||||| |||| ||||||||||||| Sbjct: 23600 ccgcctccctgctcctctccttctcctcc 23628
>tpe|BN000604.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx75 gene for class III peroxidase 75 precursor, exons 1-4 Length = 1334 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 258 cgtcgagaagctcgccaacgc 278 ||||||||||||||||||||| Sbjct: 1193 cgtcgagaagctcgccaacgc 1213
>emb|AL139022.4|CNS01DX4 Human chromosome 14 DNA sequence BAC R-840I19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 190517 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 27 ctgcctccaccttatcctcac 47 ||||||||||||||||||||| Sbjct: 76552 ctgcctccaccttatcctcac 76572
>gb|AF100776.1|AF100776 Leishmania donovani chaperonin 60.1 precursor, gene, complete cds Length = 3143 Score = 42.1 bits (21), Expect = 2.1 Identities = 40/47 (85%) Strand = Plus / Plus Query: 253 gccggcgtcgagaagctcgccaacgccgtcggcgtcaccctcggccc 299 |||||||||||||| || ||| |||||||||||||| || ||||| Sbjct: 886 gccggcgtcgagaaccttrtcaaggccgtcggcgtcacgctgggccc 932
>emb|AL831812.5|CNS08CAP Oryza sativa chromosome 12, . BAC OSJNBa0054H15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155947 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 cctcaccagctcgctcgcccc 67 ||||||||||||||||||||| Sbjct: 36493 cctcaccagctcgctcgcccc 36473
>gb|AC127244.3| Mus musculus BAC clone RP24-416M6 from 6, complete sequence Length = 165720 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 13 tccctcctcccctgctgcctc 33 ||||||||||||||||||||| Sbjct: 68730 tccctcctcccctgctgcctc 68710
>emb|AL831736.15| Mouse DNA sequence from clone RP23-32L15 on chromosome 2, complete sequence Length = 126358 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 29 gcctccaccttatcctcacct 49 ||||||||||||||||||||| Sbjct: 22194 gcctccaccttatcctcacct 22174
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11, complete sequence Length = 187956 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 119 ccgcctccctcctccgctccttctcctcc 147 ||||||||||||||||| ||| ||||||| Sbjct: 152040 ccgcctccctcctccgcccctcctcctcc 152012
>ref|XM_472303.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1863 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 ccaacgccatctccaccgcc 123 |||||||||||||||||||| Sbjct: 998 ccaacgccatctccaccgcc 979
>gb|AC119834.12| Mus musculus chromosome 5, clone RP24-383P24, complete sequence Length = 223764 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 ccctcctcccctgctgcctc 33 |||||||||||||||||||| Sbjct: 76301 ccctcctcccctgctgcctc 76282
>gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1045_C06, complete sequence Length = 143130 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ccaccgcctccctcctccgc 135 |||||||||||||||||||| Sbjct: 50287 ccaccgcctccctcctccgc 50306
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 tgctggatgagcatggcaac 336 |||||||||||||||||||| Sbjct: 749 tgctggatgagcatggcaac 768
>gb|AC145809.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0023E20, complete sequence Length = 130827 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 cccacctccgtctccgcccc 84 |||||||||||||||||||| Sbjct: 44608 cccacctccgtctccgcccc 44627
>gb|AC164303.2| Mus musculus BAC clone RP24-530J21 from chromosome 14, complete sequence Length = 164905 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ccctcctcccctgctgcctc 33 |||||||||||||||||||| Sbjct: 125904 ccctcctcccctgctgcctc 125923
>gb|AC010212.10| Drosophila melanogaster clone BACR32D05, complete sequence Length = 161579 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 580 attgaagagcttgaaagaaaagct 603 ||||||||||| |||||||||||| Sbjct: 130993 attgaagagctggaaagaaaagct 131016
>gb|AY334446.1| Candidatus Blochmannia nearcticus isolate Cnear35 heat shock protein (groEL) gene, partial cds Length = 1524 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 442 aatgattctgctggtgatgggactacgactgc 473 ||||||||||| |||||||| ||||| ||||| Sbjct: 253 aatgattctgcgggtgatggaactactactgc 284
>gb|AY334440.1| Candidatus Blochmannia ulcerosus isolate Culce18 heat shock protein (groEL) gene, partial cds Length = 1528 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 440 ctaatgattctgctggtgatgggactac 467 |||||||||||||||| ||||| ||||| Sbjct: 246 ctaatgattctgctggggatggtactac 273
>gb|AC162389.6| Mus musculus 6 BAC RP24-114M8 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 189477 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 ccaggggaggctgaggaggt 166 |||||||||||||||||||| Sbjct: 125356 ccaggggaggctgaggaggt 125337
>gb|AC137921.2| Oryza sativa chromosome 3 BAC OSJNBa0027H16 genomic sequence, complete sequence Length = 163108 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 ccatctccaccgcctccctcctcc 133 ||||||||||||||||| |||||| Sbjct: 103977 ccatctccaccgcctccttcctcc 104000
>gb|AC073422.8| Homo sapiens BAC clone RP11-535F1 from 7, complete sequence Length = 80743 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 ctcctccgctccttctcctc 146 |||||||||||||||||||| Sbjct: 53714 ctcctccgctccttctcctc 53733
>emb|AJ621256.1| Enterococcus canis partial GroEL gene for heat shock protein 60, type strain LMG 12316T Length = 688 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 aacgatggtgttaccattgc 368 |||||||||||||||||||| Sbjct: 22 aacgatggtgttaccattgc 41
>emb|AL589862.28| Human DNA sequence from clone GS1-165F21 on chromosome 10 Contains the 5' end of the PAX2 gene for paired box gene 2 and fifteen CpG islands, complete sequence Length = 187101 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 ctccctcctcccctgctgcctcca 35 ||||||||||||||||| |||||| Sbjct: 37072 ctccctcctcccctgcttcctcca 37095
>emb|AL390738.4| Human DNA sequence from clone RP11-438F9 on chromosome 13 Contains the Gsh-1 gene for homeobox protein Gsh-1 and three CpG islands, complete sequence Length = 200833 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 cctcctcccctgctgcctcc 34 |||||||||||||||||||| Sbjct: 162588 cctcctcccctgctgcctcc 162607
>gb|AC091616.2| Rattus norvegicus strain Brown Norway clone RP31-153J8, complete sequence Length = 125026 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 125 ccctcctccgctccttctcctccc 148 ||||||||| |||||||||||||| Sbjct: 92814 ccctcctcccctccttctcctccc 92791
>gb|AC094241.9| Rattus norvegicus 1 BAC CH230-3C7 (Children's Hospital Oakland Research Institute) complete sequence Length = 215638 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 9 caactccctcctcccctgctgcct 32 ||||||||| |||||||||||||| Sbjct: 159386 caactcccttctcccctgctgcct 159363
>gb|AY033884.1| Neocallimastix patriciarum heat shock protein 60 precursor (Hsp60) mRNA, complete cds Length = 2071 Score = 40.1 bits (20), Expect = 8.2 Identities = 41/48 (85%) Strand = Plus / Plus Query: 427 gttgctagcaagactaatgattctgctggtgatgggactacgactgct 474 ||||||| ||| ||||||||| ||||||||||| ||||| |||||| Sbjct: 545 gttgctatcaaaactaatgatgaagctggtgatggtactaccactgct 592
>emb|BX927157.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 10/10 Length = 140057 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 aggccggcgtcgagaagctc 270 |||||||||||||||||||| Sbjct: 93232 aggccggcgtcgagaagctc 93213
>emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08, complete sequence Length = 145670 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 ccaacgccatctccaccgcc 123 |||||||||||||||||||| Sbjct: 83473 ccaacgccatctccaccgcc 83454
>emb|Z66568.2|SPAC12G12 S.pombe chromosome I cosmid c12G12 Length = 32095 Score = 40.1 bits (20), Expect = 8.2 Identities = 41/48 (85%) Strand = Plus / Minus Query: 427 gttgctagcaagactaatgattctgctggtgatgggactacgactgct 474 ||||| |||||||||||||| |||||||||||| || || |||||| Sbjct: 24568 gttgcaagcaagactaatgaagttgctggtgatggtaccactactgct 24521
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 cggacgccaaggagatcgcc 222 |||||||||||||||||||| Sbjct: 6410606 cggacgccaaggagatcgcc 6410587 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 ggccgcgctccaggccggcg 259 |||||||||||||||||||| Sbjct: 4701250 ggccgcgctccaggccggcg 4701231
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 agaagctcgccaacgccgtcggcg 286 |||||||||||||||||| ||||| Sbjct: 3498577 agaagctcgccaacgccgccggcg 3498600
>gb|AC083751.6| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042K08, from chromosome 2, complete sequence Length = 164628 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 cccacctccgtctccgcccc 84 |||||||||||||||||||| Sbjct: 120741 cccacctccgtctccgcccc 120760
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 gcgtcgagaagctcgccaac 276 |||||||||||||||||||| Sbjct: 625389 gcgtcgagaagctcgccaac 625408
>gb|AF426026.1| Piromyces sp. E2 heat shock protein 60 (E2HSP60.1) mRNA, complete cds Length = 2438 Score = 40.1 bits (20), Expect = 8.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 439 actaatgattctgctggtgatgggactacgactgct 474 ||||| |||| |||||||||||| ||||| |||||| Sbjct: 573 actaacgattatgctggtgatggtactaccactgct 608
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 caaagtggtgaacgatggtg 358 |||||||||||||||||||| Sbjct: 931272 caaagtggtgaacgatggtg 931253
>ref|NM_001018294.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC12G12.04), partial mRNA Length = 1749 Score = 40.1 bits (20), Expect = 8.2 Identities = 41/48 (85%) Strand = Plus / Plus Query: 427 gttgctagcaagactaatgattctgctggtgatgggactacgactgct 474 ||||| |||||||||||||| |||||||||||| || || |||||| Sbjct: 322 gttgcaagcaagactaatgaagttgctggtgatggtaccactactgct 369
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 ccaacgccatctccaccgcc 123 |||||||||||||||||||| Sbjct: 19301641 ccaacgccatctccaccgcc 19301622
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 cccacctccgtctccgcccc 84 |||||||||||||||||||| Sbjct: 7318561 cccacctccgtctccgcccc 7318542
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 ccacctccgtctccgcccccagcc 89 |||||||| ||||||||||||||| Sbjct: 11431315 ccacctccatctccgcccccagcc 11431338
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 ccacctccgtctccgcccccagcc 89 |||||||| ||||||||||||||| Sbjct: 16006440 ccacctccatctccgcccccagcc 16006463
>ref|XM_395705.2| PREDICTED: Apis mellifera similar to CG18497-PA, isoform A (LOC412243), partial mRNA Length = 12083 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 cctccgctccttctcctccc 148 |||||||||||||||||||| Sbjct: 3541 cctccgctccttctcctccc 3522
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 aggccggcgtcgagaagctc 270 |||||||||||||||||||| Sbjct: 3262576 aggccggcgtcgagaagctc 3262557
>gb|AC091804.9| Homo sapiens 3 BAC RP11-281P11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 102903 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 aggttgctagcaagactaat 444 |||||||||||||||||||| Sbjct: 6188 aggttgctagcaagactaat 6207
>gb|AE004497.1| Pseudomonas aeruginosa PAO1, section 58 of 529 of the complete genome Length = 10016 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 cggacgccaaggagatcgcc 222 |||||||||||||||||||| Sbjct: 4942 cggacgccaaggagatcgcc 4961
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 tggtgcgcgcggacgccaag 213 |||||||||||||||||||| Sbjct: 3817892 tggtgcgcgcggacgccaag 3817873
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 268 ctcgccaacgccgtcggcgtcaccctcggccc 299 ||||||||||| || |||||||||||||||| Sbjct: 1104490 ctcgccaacgcggtgcgcgtcaccctcggccc 1104459
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 acggccgttcgtcgcggctg 192 |||||||||||||||||||| Sbjct: 364343 acggccgttcgtcgcggctg 364324
>dbj|AP003512.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0618D11 Length = 150103 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 ccacctccgtctccgcccccagcc 89 |||||||| ||||||||||||||| Sbjct: 35169 ccacctccatctccgcccccagcc 35192
>dbj|AP004735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0031P18 Length = 156535 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 ccacctccgtctccgcccccagcc 89 |||||||| ||||||||||||||| Sbjct: 139889 ccacctccatctccgcccccagcc 139912
>dbj|AP005097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1114E07 Length = 135511 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 ccacctccgtctccgcccccagcc 89 |||||||| ||||||||||||||| Sbjct: 45304 ccacctccatctccgcccccagcc 45327
>dbj|AK106207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-G03, full insert sequence Length = 1172 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 ccacctccgtctccgcccccagcc 89 |||||||| ||||||||||||||| Sbjct: 471 ccacctccatctccgcccccagcc 494
>dbj|AK104074.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F08, full insert sequence Length = 1175 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 ccacctccgtctccgcccccagcc 89 |||||||| ||||||||||||||| Sbjct: 565 ccacctccatctccgcccccagcc 588
>dbj|AK102674.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033102C17, full insert sequence Length = 1082 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 ccacctccgtctccgcccccagcc 89 |||||||| ||||||||||||||| Sbjct: 472 ccacctccatctccgcccccagcc 495
>dbj|AK099423.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013008I21, full insert sequence Length = 1173 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 ccacctccgtctccgcccccagcc 89 |||||||| ||||||||||||||| Sbjct: 472 ccacctccatctccgcccccagcc 495
>dbj|AK072795.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140H21, full insert sequence Length = 1173 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 ccacctccgtctccgcccccagcc 89 |||||||| ||||||||||||||| Sbjct: 472 ccacctccatctccgcccccagcc 495
>ref|NM_209575.1| Eremothecium gossypii ADR126Cp (ADR126C), mRNA Length = 2076 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 caaagtggtgaacgatggtg 358 |||||||||||||||||||| Sbjct: 36 caaagtggtgaacgatggtg 55
>dbj|AK065157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002B21, full insert sequence Length = 3789 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 cccacctccgtctccgcccc 84 |||||||||||||||||||| Sbjct: 125 cccacctccgtctccgcccc 144
>gb|AC008001.1|AC008001 Drosophila melanogaster, chromosome 3R, region 83E7-83F2, P1 clones DS04679 and DS07437, complete sequence Length = 130149 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 580 attgaagagcttgaaagaaaagct 603 ||||||||||| |||||||||||| Sbjct: 125218 attgaagagctggaaagaaaagct 125195
>gb|AE003674.3| Drosophila melanogaster chromosome 3R, section 10 of 118 of the complete sequence Length = 298020 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 580 attgaagagcttgaaagaaaagct 603 ||||||||||| |||||||||||| Sbjct: 23564 attgaagagctggaaagaaaagct 23587
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 251 aggccggcgtcgagaagctcgccaacgc 278 ||||||||||||||| ||| |||||||| Sbjct: 2043303 aggccggcgtcgagatgctggccaacgc 2043276
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 cccacctccgtctccgcccc 84 |||||||||||||||||||| Sbjct: 7388647 cccacctccgtctccgcccc 7388628
>emb|AL731744.6|CNS08C7T Oryza sativa chromosome 12, . BAC OSJNBa0026C14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 190718 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 cccacctccgtctccgcccc 84 |||||||||||||||||||| Sbjct: 128606 cccacctccgtctccgcccc 128625
>gb|AC134555.4| Mus musculus BAC clone RP24-320K4 from 17, complete sequence Length = 174388 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 cctcctcccctgctgcctcc 34 |||||||||||||||||||| Sbjct: 85132 cctcctcccctgctgcctcc 85151
>gb|AC145610.4| Mus musculus BAC clone RP24-281O20 from 18, complete sequence Length = 182640 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 ctccctcctccgctccttctcctc 146 ||||||||||| |||||||||||| Sbjct: 49965 ctccctcctcctctccttctcctc 49942
>gb|AC149346.2| Phakopsora pachyrhizi clone JGIAFNA-33E14, complete sequence Length = 38941 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ctccctcctccgctccttct 142 |||||||||||||||||||| Sbjct: 21526 ctccctcctccgctccttct 21507
>emb|AL772190.6| Mouse DNA sequence from clone RP23-124P7 on chromosome 2, complete sequence Length = 206240 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ctccctcctcccctgctgcc 31 |||||||||||||||||||| Sbjct: 98077 ctccctcctcccctgctgcc 98096
>dbj|D50609.1|YSPHSPH Fission yeast gene for mitochondrial heat-shock protein (HSP60), complete cds Length = 4118 Score = 40.1 bits (20), Expect = 8.2 Identities = 41/48 (85%) Strand = Plus / Plus Query: 427 gttgctagcaagactaatgattctgctggtgatgggactacgactgct 474 ||||| |||||||||||||| |||||||||||| || || |||||| Sbjct: 1894 gttgcaagcaagactaatgaagttgctggtgatggtaccactactgct 1941
>dbj|D12706.1|PSEPRTR P.aeruginosa genes for negative and positive regulators of pyocin genes, complete cds Length = 2416 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 cggacgccaaggagatcgcc 222 |||||||||||||||||||| Sbjct: 2052 cggacgccaaggagatcgcc 2033
>dbj|AB030825.1| Pseudomonas aeruginosa genomic DNA, partial sequence, strain:PAO1 Length = 23355 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 cggacgccaaggagatcgcc 222 |||||||||||||||||||| Sbjct: 2267 cggacgccaaggagatcgcc 2286
>emb|AL669932.14| Mouse DNA sequence from clone RP23-430P1 on chromosome 2, complete sequence Length = 148257 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 64 ccccacctccgtctccgcccccag 87 ||||||||||||| |||||||||| Sbjct: 123188 ccccacctccgtccccgcccccag 123211 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,652,063 Number of Sequences: 3902068 Number of extensions: 6652063 Number of successful extensions: 142638 Number of sequences better than 10.0: 152 Number of HSP's better than 10.0 without gapping: 160 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 140148 Number of HSP's gapped (non-prelim): 2484 length of query: 606 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 583 effective length of database: 17,143,297,704 effective search space: 9994542561432 effective search space used: 9994542561432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
