ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63p22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_463361.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1656 Score = 448 bits (226), Expect = e-123 Identities = 334/370 (90%) Strand = Plus / Plus Query: 24 caccaccaacgccgtctgtgggtcaaggaccggtcgcaggcgtggtgggaccagtgcaac 83 |||||||| || || |||||||| ||||||||||||| ||||||||||||| | |||||| Sbjct: 589 caccaccagcggcggctgtgggtgaaggaccggtcgcgggcgtggtgggacaaatgcaac 648 Query: 84 agccccgatttcccagaggcagagtttcggcgcgccttcaggatgggccgggagacgttc 143 ||||| || | ||| |||| ||||| || ||||| ||| ||||||| || ||||||||| Sbjct: 649 agcccggactacccggaggaggagttccgtcgcgcgttccggatggggcgcgagacgttc 708 Query: 144 gacatgatctgcgatgcgctcggctccgcggtggctaaggaagacaccatgcttcgcgcg 203 |||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| ||||| Sbjct: 709 gacatgatctgcgaggcgctgggctccgcggtggccaaggaggacaccatgctccgcgcc 768 Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctgcatctggcgcctcgccaccggtgagccg 263 |||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 769 gccatccccgtgcgccagcgcgtcgccgtctgcatctggcgcctcgccacgggcgagccg 828 Query: 264 ctccgcctcgtctccaagcgcttcggcctcggcatctccacatgccacaagctcgtcctc 323 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 829 ctccgcctcgtctccaagcgcttcggcctcgggatctccacctgccacaagctcgtcctc 888 Query: 324 gaggtctgcggggccatcaagtctgtcctcatgccgcgcttcctccaatggcccgatgag 383 ||||| |||| ||||||||||| ||||||||||||||||||||||| |||||||| ||| Sbjct: 889 gaggtgtgcgccgccatcaagtccgtcctcatgccgcgcttcctccagtggcccgacgag 948 Query: 384 gccgccgccg 393 |||||||||| Sbjct: 949 gccgccgccg 958 Score = 89.7 bits (45), Expect = 8e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 426 ggcgttccgggcgtcatcggagccatgtacaccacgcacatccctatcatcgcgcccaag 485 ||||| |||||||| ||||| |||||||||||||| |||||||| ||||||||||||||| Sbjct: 991 ggcgtcccgggcgtgatcggcgccatgtacaccacccacatccccatcatcgcgcccaag 1050 Query: 486 atctc 490 ||||| Sbjct: 1051 atctc 1055
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 448 bits (226), Expect = e-123 Identities = 334/370 (90%) Strand = Plus / Plus Query: 24 caccaccaacgccgtctgtgggtcaaggaccggtcgcaggcgtggtgggaccagtgcaac 83 |||||||| || || |||||||| ||||||||||||| ||||||||||||| | |||||| Sbjct: 22601411 caccaccagcggcggctgtgggtgaaggaccggtcgcgggcgtggtgggacaaatgcaac 22601470 Query: 84 agccccgatttcccagaggcagagtttcggcgcgccttcaggatgggccgggagacgttc 143 ||||| || | ||| |||| ||||| || ||||| ||| ||||||| || ||||||||| Sbjct: 22601471 agcccggactacccggaggaggagttccgtcgcgcgttccggatggggcgcgagacgttc 22601530 Query: 144 gacatgatctgcgatgcgctcggctccgcggtggctaaggaagacaccatgcttcgcgcg 203 |||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| ||||| Sbjct: 22601531 gacatgatctgcgaggcgctgggctccgcggtggccaaggaggacaccatgctccgcgcc 22601590 Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctgcatctggcgcctcgccaccggtgagccg 263 |||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 22601591 gccatccccgtgcgccagcgcgtcgccgtctgcatctggcgcctcgccacgggcgagccg 22601650 Query: 264 ctccgcctcgtctccaagcgcttcggcctcggcatctccacatgccacaagctcgtcctc 323 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 22601651 ctccgcctcgtctccaagcgcttcggcctcgggatctccacctgccacaagctcgtcctc 22601710 Query: 324 gaggtctgcggggccatcaagtctgtcctcatgccgcgcttcctccaatggcccgatgag 383 ||||| |||| ||||||||||| ||||||||||||||||||||||| |||||||| ||| Sbjct: 22601711 gaggtgtgcgccgccatcaagtccgtcctcatgccgcgcttcctccagtggcccgacgag 22601770 Query: 384 gccgccgccg 393 |||||||||| Sbjct: 22601771 gccgccgccg 22601780 Score = 167 bits (84), Expect = 4e-38 Identities = 168/196 (85%) Strand = Plus / Plus Query: 138 acgttcgacatgatctgcgatgcgctcggctccgcggtggctaaggaagacaccatgctt 197 |||||||| || ||||||| | ||||| | |||| || || ||||| ||||||||||| Sbjct: 4645943 acgttcgaggtggtctgcgacgagctcgccgccgccgtcgccaaggaggacaccatgctc 4646002 Query: 198 cgcgcggccatccccgtgcgtcagcgcgtcgccgtctgcatctggcgcctcgccaccggt 257 ||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||| || Sbjct: 4646003 cgcgccgccatcccggtgcgcaagcgcgtcgccgtctgcgtctggcgcctcgccacgggg 4646062 Query: 258 gagccgctccgcctcgtctccaagcgcttcggcctcggcatctccacatgccacaagctc 317 ||||| || | || || |||||||||||||||||||| |||||||| |||||||||||| Sbjct: 4646063 gagcccctgaggctggtgtccaagcgcttcggcctcgggatctccacctgccacaagctc 4646122 Query: 318 gtcctcgaggtctgcg 333 || ||||||||||||| Sbjct: 4646123 gtgctcgaggtctgcg 4646138 Score = 89.7 bits (45), Expect = 8e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 426 ggcgttccgggcgtcatcggagccatgtacaccacgcacatccctatcatcgcgcccaag 485 ||||| |||||||| ||||| |||||||||||||| |||||||| ||||||||||||||| Sbjct: 22601813 ggcgtcccgggcgtgatcggcgccatgtacaccacccacatccccatcatcgcgcccaag 22601872 Query: 486 atctc 490 ||||| Sbjct: 22601873 atctc 22601877 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 205 ccatccccgtgcgtcagcgcgtcgccgtctgcatctggcgcctcgccaccggtgagccgc 264 ||||||| |||| |||||||| ||||||||| ||||||||||| |||||| |||||| Sbjct: 23546266 ccatccctgtgccccagcgcgttgccgtctgcctctggcgcctcaccaccgacaagccgc 23546325 Query: 265 tccgc 269 ||||| Sbjct: 23546326 tccgc 23546330 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 435 ggcgtcatcggagccatgtacaccacgcacatccctatcatcgcgcccaag 485 |||||| |||| || || |||||||| |||||||| ||||||||||||||| Sbjct: 4646240 ggcgtcgtcggcgcgatctacaccacccacatccccatcatcgcgcccaag 4646290
>dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1097D05 Length = 144879 Score = 448 bits (226), Expect = e-123 Identities = 334/370 (90%) Strand = Plus / Plus Query: 24 caccaccaacgccgtctgtgggtcaaggaccggtcgcaggcgtggtgggaccagtgcaac 83 |||||||| || || |||||||| ||||||||||||| ||||||||||||| | |||||| Sbjct: 117148 caccaccagcggcggctgtgggtgaaggaccggtcgcgggcgtggtgggacaaatgcaac 117207 Query: 84 agccccgatttcccagaggcagagtttcggcgcgccttcaggatgggccgggagacgttc 143 ||||| || | ||| |||| ||||| || ||||| ||| ||||||| || ||||||||| Sbjct: 117208 agcccggactacccggaggaggagttccgtcgcgcgttccggatggggcgcgagacgttc 117267 Query: 144 gacatgatctgcgatgcgctcggctccgcggtggctaaggaagacaccatgcttcgcgcg 203 |||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| ||||| Sbjct: 117268 gacatgatctgcgaggcgctgggctccgcggtggccaaggaggacaccatgctccgcgcc 117327 Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctgcatctggcgcctcgccaccggtgagccg 263 |||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 117328 gccatccccgtgcgccagcgcgtcgccgtctgcatctggcgcctcgccacgggcgagccg 117387 Query: 264 ctccgcctcgtctccaagcgcttcggcctcggcatctccacatgccacaagctcgtcctc 323 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 117388 ctccgcctcgtctccaagcgcttcggcctcgggatctccacctgccacaagctcgtcctc 117447 Query: 324 gaggtctgcggggccatcaagtctgtcctcatgccgcgcttcctccaatggcccgatgag 383 ||||| |||| ||||||||||| ||||||||||||||||||||||| |||||||| ||| Sbjct: 117448 gaggtgtgcgccgccatcaagtccgtcctcatgccgcgcttcctccagtggcccgacgag 117507 Query: 384 gccgccgccg 393 |||||||||| Sbjct: 117508 gccgccgccg 117517 Score = 89.7 bits (45), Expect = 8e-15 Identities = 60/65 (92%) Strand = Plus / Plus Query: 426 ggcgttccgggcgtcatcggagccatgtacaccacgcacatccctatcatcgcgcccaag 485 ||||| |||||||| ||||| |||||||||||||| |||||||| ||||||||||||||| Sbjct: 117550 ggcgtcccgggcgtgatcggcgccatgtacaccacccacatccccatcatcgcgcccaag 117609 Query: 486 atctc 490 ||||| Sbjct: 117610 atctc 117614
>dbj|AK120510.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123H20, full insert sequence Length = 2353 Score = 381 bits (192), Expect = e-102 Identities = 294/328 (89%) Strand = Plus / Plus Query: 24 caccaccaacgccgtctgtgggtcaaggaccggtcgcaggcgtggtgggaccagtgcaac 83 |||||||| || || |||||||| ||||||||||||| ||||||||||||| | |||||| Sbjct: 784 caccaccagcggcggctgtgggtgaaggaccggtcgcgggcgtggtgggacaaatgcaac 843 Query: 84 agccccgatttcccagaggcagagtttcggcgcgccttcaggatgggccgggagacgttc 143 ||||| || | ||| |||| ||||| || ||||| ||| ||||||| || ||||||||| Sbjct: 844 agcccggactacccggaggaggagttccgtcgcgcgttccggatggggcgcgagacgttc 903 Query: 144 gacatgatctgcgatgcgctcggctccgcggtggctaaggaagacaccatgcttcgcgcg 203 |||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| ||||| Sbjct: 904 gacatgatctgcgaggcgctgggctccgcggtggccaaggaggacaccatgctccgcgcc 963 Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctgcatctggcgcctcgccaccggtgagccg 263 |||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 964 gccatccccgtgcgccagcgcgtcgccgtctgcatctggcgcctcgccacgggcgagccg 1023 Query: 264 ctccgcctcgtctccaagcgcttcggcctcggcatctccacatgccacaagctcgtcctc 323 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 1024 ctccgcctcgtctccaagcgcttcggcctcgggatctccacctgccacaagctcgtcctc 1083 Query: 324 gaggtctgcggggccatcaagtctgtcc 351 ||||| |||| ||||||||||| |||| Sbjct: 1084 gaggtgtgcgccgccatcaagtccgtcc 1111
>ref|XM_476023.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1272 Score = 216 bits (109), Expect = 5e-53 Identities = 283/341 (82%) Strand = Plus / Plus Query: 39 ctgtgggtcaaggaccggtcgcaggcgtggtgggaccagtgcaacagccccgatttccca 98 |||||||| ||||||||||||| ||||||||||| | ||||| |||| |||| | ||| Sbjct: 217 ctgtgggtgaaggaccggtcgcgcgcgtggtgggagctgtgcagcagcgccgactacccg 276 Query: 99 gaggcagagtttcggcgcgccttcaggatgggccgggagacgttcgacatgatctgcgat 158 ||||| || || || ||||||||| | ||| ||| || ||| || | ||||||| Sbjct: 277 gaggccgacttccgccgcgccttccgcatgtcccgccccaccttccacttcctctgcgac 336 Query: 159 gcgctcggctccgcggtggctaaggaagacaccatgcttcgcgcggccatccccgtgcgt 218 ||||||| | |||| || || ||||| |||||| || ||||| ||||||||||| || Sbjct: 337 gcgctcgccgccgccgtcgccaaggaggacaccgccctccgcgccgccatccccgtccgc 396 Query: 219 cagcgcgtcgccgtctgcatctggcgcctcgccaccggtgagccgctccgcctcgtctcc 278 |||||||||||||||||| |||||||||||||||| || ||||| |||||| |||||||| Sbjct: 397 cagcgcgtcgccgtctgcgtctggcgcctcgccacgggggagccactccgcgtcgtctcc 456 Query: 279 aagcgcttcggcctcggcatctccacatgccacaagctcgtcctcgaggtctgcggggcc 338 |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||| Sbjct: 457 aagcgcttcggcctcggcatctccacctgccacaagctcatcctcgaggtctgcgccgcc 516 Query: 339 atcaagtctgtcctcatgccgcgcttcctccaatggcccga 379 ||| |||||||||||||||||||||| |||||||| Sbjct: 517 atccgcaacctcctcatgccgcgcttcctccactggcccga 557 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 447 gccatgtacaccacgcacatccctatcatcgcgcccaagatctccg 492 ||||||||||||||||||||||| |||||||| |||||| |||||| Sbjct: 625 gccatgtacaccacgcacatccccatcatcgcccccaaggtctccg 670
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08, complete sequence Length = 142196 Score = 216 bits (109), Expect = 5e-53 Identities = 283/341 (82%) Strand = Plus / Minus Query: 39 ctgtgggtcaaggaccggtcgcaggcgtggtgggaccagtgcaacagccccgatttccca 98 |||||||| ||||||||||||| ||||||||||| | ||||| |||| |||| | ||| Sbjct: 104679 ctgtgggtgaaggaccggtcgcgcgcgtggtgggagctgtgcagcagcgccgactacccg 104620 Query: 99 gaggcagagtttcggcgcgccttcaggatgggccgggagacgttcgacatgatctgcgat 158 ||||| || || || ||||||||| | ||| ||| || ||| || | ||||||| Sbjct: 104619 gaggccgacttccgccgcgccttccgcatgtcccgccccaccttccacttcctctgcgac 104560 Query: 159 gcgctcggctccgcggtggctaaggaagacaccatgcttcgcgcggccatccccgtgcgt 218 ||||||| | |||| || || ||||| |||||| || ||||| ||||||||||| || Sbjct: 104559 gcgctcgccgccgccgtcgccaaggaggacaccgccctccgcgccgccatccccgtccgc 104500 Query: 219 cagcgcgtcgccgtctgcatctggcgcctcgccaccggtgagccgctccgcctcgtctcc 278 |||||||||||||||||| |||||||||||||||| || ||||| |||||| |||||||| Sbjct: 104499 cagcgcgtcgccgtctgcgtctggcgcctcgccacgggggagccactccgcgtcgtctcc 104440 Query: 279 aagcgcttcggcctcggcatctccacatgccacaagctcgtcctcgaggtctgcggggcc 338 |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||| Sbjct: 104439 aagcgcttcggcctcggcatctccacctgccacaagctcatcctcgaggtctgcgccgcc 104380 Query: 339 atcaagtctgtcctcatgccgcgcttcctccaatggcccga 379 ||| |||||||||||||||||||||| |||||||| Sbjct: 104379 atccgcaacctcctcatgccgcgcttcctccactggcccga 104339 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 447 gccatgtacaccacgcacatccctatcatcgcgcccaagatctccg 492 ||||||||||||||||||||||| |||||||| |||||| |||||| Sbjct: 104271 gccatgtacaccacgcacatccccatcatcgcccccaaggtctccg 104226
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 216 bits (109), Expect = 5e-53 Identities = 283/341 (82%) Strand = Plus / Minus Query: 39 ctgtgggtcaaggaccggtcgcaggcgtggtgggaccagtgcaacagccccgatttccca 98 |||||||| ||||||||||||| ||||||||||| | ||||| |||| |||| | ||| Sbjct: 29326022 ctgtgggtgaaggaccggtcgcgcgcgtggtgggagctgtgcagcagcgccgactacccg 29325963 Query: 99 gaggcagagtttcggcgcgccttcaggatgggccgggagacgttcgacatgatctgcgat 158 ||||| || || || ||||||||| | ||| ||| || ||| || | ||||||| Sbjct: 29325962 gaggccgacttccgccgcgccttccgcatgtcccgccccaccttccacttcctctgcgac 29325903 Query: 159 gcgctcggctccgcggtggctaaggaagacaccatgcttcgcgcggccatccccgtgcgt 218 ||||||| | |||| || || ||||| |||||| || ||||| ||||||||||| || Sbjct: 29325902 gcgctcgccgccgccgtcgccaaggaggacaccgccctccgcgccgccatccccgtccgc 29325843 Query: 219 cagcgcgtcgccgtctgcatctggcgcctcgccaccggtgagccgctccgcctcgtctcc 278 |||||||||||||||||| |||||||||||||||| || ||||| |||||| |||||||| Sbjct: 29325842 cagcgcgtcgccgtctgcgtctggcgcctcgccacgggggagccactccgcgtcgtctcc 29325783 Query: 279 aagcgcttcggcctcggcatctccacatgccacaagctcgtcctcgaggtctgcggggcc 338 |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||| Sbjct: 29325782 aagcgcttcggcctcggcatctccacctgccacaagctcatcctcgaggtctgcgccgcc 29325723 Query: 339 atcaagtctgtcctcatgccgcgcttcctccaatggcccga 379 ||| |||||||||||||||||||||| |||||||| Sbjct: 29325722 atccgcaacctcctcatgccgcgcttcctccactggcccga 29325682 Score = 133 bits (67), Expect = 6e-28 Identities = 139/163 (85%) Strand = Plus / Minus Query: 180 aaggaagacaccatgcttcgcgcggccatccccgtgcgtcagcgcgtcgccgtctgcatc 239 ||||| ||||||| ||| ||||| ||||||||||||| |||||||||||||||||| || Sbjct: 5131533 aaggaggacaccacgctccgcgccgccatccccgtgccccagcgcgtcgccgtctgcctc 5131474 Query: 240 tggcgcctcgccaccggtgagccgctccgcctcgtctccaagcgcttcggcctcggcatc 299 ||||||||||||||||| || ||||||||| || ||| |||||||||||||||||| Sbjct: 5131473 tggcgcctcgccaccggcgacccgctccgcgaggtgtcccgccgcttcggcctcggcatc 5131414 Query: 300 tccacatgccacaagctcgtcctcgaggtctgcggggccatca 342 ||||| ||||||| || ||||| ||||||||| ||||||| Sbjct: 5131413 tccacctgccacagcatcatcctccaggtctgcgccgccatca 5131371 Score = 105 bits (53), Expect = 1e-19 Identities = 131/157 (83%) Strand = Plus / Plus Query: 186 gacaccatgcttcgcgcggccatccccgtgcgtcagcgcgtcgccgtctgcatctggcgc 245 ||||||| ||| ||| | ||||||||||||| |||||||||||||||||| |||||||| Sbjct: 5056768 gacaccacgctccgctccgccatccccgtgccgcagcgcgtcgccgtctgcctctggcgc 5056827 Query: 246 ctcgccaccggtgagccgctccgcctcgtctccaagcgcttcggcctcggcatctccaca 305 ||||||||||| || || |||||| || ||| ||||| ||||||||||||||||| Sbjct: 5056828 ctcgccaccggcgacccactccgcgaggtgtcccgccgctttggcctcggcatctccacc 5056887 Query: 306 tgccacaagctcgtcctcgaggtctgcggggccatca 342 |||||||| || || || ||||||||| ||||||| Sbjct: 5056888 tgccacaacatcatcgtccaggtctgcgccgccatca 5056924 Score = 101 bits (51), Expect = 2e-18 Identities = 135/163 (82%) Strand = Plus / Plus Query: 180 aaggaagacaccatgcttcgcgcggccatccccgtgcgtcagcgcgtcgccgtctgcatc 239 ||||| ||||||| ||| ||| | |||||||| |||| ||||||||| ||||||||||| Sbjct: 5092698 aaggaggacaccacgctgcgcaccgccatccctgtgccccagcgcgtcaccgtctgcatc 5092757 Query: 240 tggcgcctcgccaccggtgagccgctccgcctcgtctccaagcgcttcggcctcggcatc 299 ||||||||||||||||| || || |||||| || ||| |||||||||||||||||| Sbjct: 5092758 tggcgcctcgccaccggcgacccactccgcgaggtgtcccgccgcttcggcctcggcatc 5092817 Query: 300 tccacatgccacaagctcgtcctcgaggtctgcggggccatca 342 || || |||||||| || || || ||||||||| ||||||| Sbjct: 5092818 tctacctgccacaacatcatcgtccaggtctgcgccgccatca 5092860 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 447 gccatgtacaccacgcacatccctatcatcgcgcccaagatctccg 492 ||||||||||||||||||||||| |||||||| |||||| |||||| Sbjct: 29325614 gccatgtacaccacgcacatccccatcatcgcccccaaggtctccg 29325569 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctgcatctggcg 244 ||||||||||||| |||||||||||||||||||||||||| Sbjct: 22595092 gccatccccgtgcaccagcgcgtcgccgtctgcatctggcg 22595052 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 205 ccatccccgtgcgtcagcgcgtcgccgtctgcatctggcg 244 |||||| | |||| |||||||||||||||||||||||||| Sbjct: 22594795 ccatcctcatgcgccagcgcgtcgccgtctgcatctggcg 22594756
>dbj|AK064253.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-C07, full insert sequence Length = 1538 Score = 216 bits (109), Expect = 5e-53 Identities = 283/341 (82%) Strand = Plus / Plus Query: 39 ctgtgggtcaaggaccggtcgcaggcgtggtgggaccagtgcaacagccccgatttccca 98 |||||||| ||||||||||||| ||||||||||| | ||||| |||| |||| | ||| Sbjct: 293 ctgtgggtgaaggaccggtcgcgcgcgtggtgggagctgtgcagcagcgccgactacccg 352 Query: 99 gaggcagagtttcggcgcgccttcaggatgggccgggagacgttcgacatgatctgcgat 158 ||||| || || || ||||||||| | ||| ||| || ||| || | ||||||| Sbjct: 353 gaggccgacttccgccgcgccttccgcatgtcccgccccaccttccacttcctctgcgac 412 Query: 159 gcgctcggctccgcggtggctaaggaagacaccatgcttcgcgcggccatccccgtgcgt 218 ||||||| | |||| || || ||||| |||||| || ||||| ||||||||||| || Sbjct: 413 gcgctcgccgccgccgtcgccaaggaggacaccgccctccgcgccgccatccccgtccgc 472 Query: 219 cagcgcgtcgccgtctgcatctggcgcctcgccaccggtgagccgctccgcctcgtctcc 278 |||||||||||||||||| |||||||||||||||| || ||||| |||||| |||||||| Sbjct: 473 cagcgcgtcgccgtctgcgtctggcgcctcgccacgggggagccactccgcgtcgtctcc 532 Query: 279 aagcgcttcggcctcggcatctccacatgccacaagctcgtcctcgaggtctgcggggcc 338 |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||| Sbjct: 533 aagcgcttcggcctcggcatctccacctgccacaagctcatcctcgaggtctgcgccgcc 592 Query: 339 atcaagtctgtcctcatgccgcgcttcctccaatggcccga 379 ||| |||||||||||||||||||||| |||||||| Sbjct: 593 atccgcaacctcctcatgccgcgcttcctccactggcccga 633 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 447 gccatgtacaccacgcacatccctatcatcgcgcccaagatctccg 492 ||||||||||||||||||||||| |||||||| |||||| |||||| Sbjct: 701 gccatgtacaccacgcacatccccatcatcgcccccaaggtctccg 746
>ref|NM_189629.1| Oryza sativa (japonica cultivar-group), Ozsa8057 predicted mRNA Length = 1716 Score = 167 bits (84), Expect = 4e-38 Identities = 168/196 (85%) Strand = Plus / Plus Query: 138 acgttcgacatgatctgcgatgcgctcggctccgcggtggctaaggaagacaccatgctt 197 |||||||| || ||||||| | ||||| | |||| || || ||||| ||||||||||| Sbjct: 757 acgttcgaggtggtctgcgacgagctcgccgccgccgtcgccaaggaggacaccatgctc 816 Query: 198 cgcgcggccatccccgtgcgtcagcgcgtcgccgtctgcatctggcgcctcgccaccggt 257 ||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||| || Sbjct: 817 cgcgccgccatcccggtgcgcaagcgcgtcgccgtctgcgtctggcgcctcgccacgggg 876 Query: 258 gagccgctccgcctcgtctccaagcgcttcggcctcggcatctccacatgccacaagctc 317 ||||| || | || || |||||||||||||||||||| |||||||| |||||||||||| Sbjct: 877 gagcccctgaggctggtgtccaagcgcttcggcctcgggatctccacctgccacaagctc 936 Query: 318 gtcctcgaggtctgcg 333 || ||||||||||||| Sbjct: 937 gtgctcgaggtctgcg 952 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 435 ggcgtcatcggagccatgtacaccacgcacatccctatcatcgcgcccaag 485 |||||| |||| || || |||||||| |||||||| ||||||||||||||| Sbjct: 1054 ggcgtcgtcggcgcgatctacaccacccacatccccatcatcgcgcccaag 1104
>dbj|AP002836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0512G09 Length = 146921 Score = 167 bits (84), Expect = 4e-38 Identities = 168/196 (85%) Strand = Plus / Plus Query: 138 acgttcgacatgatctgcgatgcgctcggctccgcggtggctaaggaagacaccatgctt 197 |||||||| || ||||||| | ||||| | |||| || || ||||| ||||||||||| Sbjct: 6188 acgttcgaggtggtctgcgacgagctcgccgccgccgtcgccaaggaggacaccatgctc 6247 Query: 198 cgcgcggccatccccgtgcgtcagcgcgtcgccgtctgcatctggcgcctcgccaccggt 257 ||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||| || Sbjct: 6248 cgcgccgccatcccggtgcgcaagcgcgtcgccgtctgcgtctggcgcctcgccacgggg 6307 Query: 258 gagccgctccgcctcgtctccaagcgcttcggcctcggcatctccacatgccacaagctc 317 ||||| || | || || |||||||||||||||||||| |||||||| |||||||||||| Sbjct: 6308 gagcccctgaggctggtgtccaagcgcttcggcctcgggatctccacctgccacaagctc 6367 Query: 318 gtcctcgaggtctgcg 333 || ||||||||||||| Sbjct: 6368 gtgctcgaggtctgcg 6383 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 435 ggcgtcatcggagccatgtacaccacgcacatccctatcatcgcgcccaag 485 |||||| |||| || || |||||||| |||||||| ||||||||||||||| Sbjct: 6485 ggcgtcgtcggcgcgatctacaccacccacatccccatcatcgcgcccaag 6535
>dbj|AP002816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0695A04 Length = 158133 Score = 167 bits (84), Expect = 4e-38 Identities = 168/196 (85%) Strand = Plus / Plus Query: 138 acgttcgacatgatctgcgatgcgctcggctccgcggtggctaaggaagacaccatgctt 197 |||||||| || ||||||| | ||||| | |||| || || ||||| ||||||||||| Sbjct: 53159 acgttcgaggtggtctgcgacgagctcgccgccgccgtcgccaaggaggacaccatgctc 53218 Query: 198 cgcgcggccatccccgtgcgtcagcgcgtcgccgtctgcatctggcgcctcgccaccggt 257 ||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||| || Sbjct: 53219 cgcgccgccatcccggtgcgcaagcgcgtcgccgtctgcgtctggcgcctcgccacgggg 53278 Query: 258 gagccgctccgcctcgtctccaagcgcttcggcctcggcatctccacatgccacaagctc 317 ||||| || | || || |||||||||||||||||||| |||||||| |||||||||||| Sbjct: 53279 gagcccctgaggctggtgtccaagcgcttcggcctcgggatctccacctgccacaagctc 53338 Query: 318 gtcctcgaggtctgcg 333 || ||||||||||||| Sbjct: 53339 gtgctcgaggtctgcg 53354 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 435 ggcgtcatcggagccatgtacaccacgcacatccctatcatcgcgcccaag 485 |||||| |||| || || |||||||| |||||||| ||||||||||||||| Sbjct: 53456 ggcgtcgtcggcgcgatctacaccacccacatccccatcatcgcgcccaag 53506
>dbj|AK106168.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-B09, full insert sequence Length = 1205 Score = 167 bits (84), Expect = 4e-38 Identities = 168/196 (85%) Strand = Plus / Plus Query: 138 acgttcgacatgatctgcgatgcgctcggctccgcggtggctaaggaagacaccatgctt 197 |||||||| || ||||||| | ||||| | |||| || || ||||| ||||||||||| Sbjct: 192 acgttcgaggtggtctgcgacgagctcgccgccgccgtcgccaaggaggacaccatgctc 251 Query: 198 cgcgcggccatccccgtgcgtcagcgcgtcgccgtctgcatctggcgcctcgccaccggt 257 ||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||| || Sbjct: 252 cgcgccgccatcccggtgcgcaagcgcgtcgccgtctgcgtctggcgcctcgccacgggg 311 Query: 258 gagccgctccgcctcgtctccaagcgcttcggcctcggcatctccacatgccacaagctc 317 ||||| || | || || |||||||||||||||||||| |||||||| |||||||||||| Sbjct: 312 gagcccctgaggctggtgtccaagcgcttcggcctcgggatctccacctgccacaagctc 371 Query: 318 gtcctcgaggtctgcg 333 || ||||||||||||| Sbjct: 372 gtgctcgaggtctgcg 387 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 435 ggcgtcatcggagccatgtacaccacgcacatccctatcatcgcgcccaag 485 |||||| |||| || || |||||||| |||||||| ||||||||||||||| Sbjct: 489 ggcgtcgtcggcgcgatctacaccacccacatccccatcatcgcgcccaag 539
>dbj|AK105331.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-C05, full insert sequence Length = 1182 Score = 167 bits (84), Expect = 4e-38 Identities = 168/196 (85%) Strand = Plus / Plus Query: 138 acgttcgacatgatctgcgatgcgctcggctccgcggtggctaaggaagacaccatgctt 197 |||||||| || ||||||| | ||||| | |||| || || ||||| ||||||||||| Sbjct: 510 acgttcgaggtggtctgcgacgagctcgccgccgccgtcgccaaggaggacaccatgctc 569 Query: 198 cgcgcggccatccccgtgcgtcagcgcgtcgccgtctgcatctggcgcctcgccaccggt 257 ||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||| || Sbjct: 570 cgcgccgccatcccggtgcgcaagcgcgtcgccgtctgcgtctggcgcctcgccacgggg 629 Query: 258 gagccgctccgcctcgtctccaagcgcttcggcctcggcatctccacatgccacaagctc 317 ||||| || | || || |||||||||||||||||||| |||||||| |||||||||||| Sbjct: 630 gagcccctgaggctggtgtccaagcgcttcggcctcgggatctccacctgccacaagctc 689 Query: 318 gtcctcgaggtctgcg 333 || ||||||||||||| Sbjct: 690 gtgctcgaggtctgcg 705 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 435 ggcgtcatcggagccatgtacaccacgcacatccctatcatcgcgcccaag 485 |||||| |||| || || |||||||| |||||||| ||||||||||||||| Sbjct: 807 ggcgtcgtcggcgcgatctacaccacccacatccccatcatcgcgcccaag 857
>dbj|AK105323.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-G12, full insert sequence Length = 1523 Score = 167 bits (84), Expect = 4e-38 Identities = 168/196 (85%) Strand = Plus / Plus Query: 138 acgttcgacatgatctgcgatgcgctcggctccgcggtggctaaggaagacaccatgctt 197 |||||||| || ||||||| | ||||| | |||| || || ||||| ||||||||||| Sbjct: 510 acgttcgaggtggtctgcgacgagctcgccgccgccgtcgccaaggaggacaccatgctc 569 Query: 198 cgcgcggccatccccgtgcgtcagcgcgtcgccgtctgcatctggcgcctcgccaccggt 257 ||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||| || Sbjct: 570 cgcgccgccatcccggtgcgcaagcgcgtcgccgtctgcgtctggcgcctcgccacgggg 629 Query: 258 gagccgctccgcctcgtctccaagcgcttcggcctcggcatctccacatgccacaagctc 317 ||||| || | || || |||||||||||||||||||| |||||||| |||||||||||| Sbjct: 630 gagcccctgaggctggtgtccaagcgcttcggcctcgggatctccacctgccacaagctc 689 Query: 318 gtcctcgaggtctgcg 333 || ||||||||||||| Sbjct: 690 gtgctcgaggtctgcg 705 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 435 ggcgtcatcggagccatgtacaccacgcacatccctatcatcgcgcccaag 485 |||||| |||| || || |||||||| |||||||| ||||||||||||||| Sbjct: 807 ggcgtcgtcggcgcgatctacaccacccacatccccatcatcgcgcccaag 857
>gb|AC097174.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1111_A10, complete sequence Length = 155106 Score = 133 bits (67), Expect = 6e-28 Identities = 139/163 (85%) Strand = Plus / Minus Query: 180 aaggaagacaccatgcttcgcgcggccatccccgtgcgtcagcgcgtcgccgtctgcatc 239 ||||| ||||||| ||| ||||| ||||||||||||| |||||||||||||||||| || Sbjct: 46036 aaggaggacaccacgctccgcgccgccatccccgtgccccagcgcgtcgccgtctgcctc 45977 Query: 240 tggcgcctcgccaccggtgagccgctccgcctcgtctccaagcgcttcggcctcggcatc 299 ||||||||||||||||| || ||||||||| || ||| |||||||||||||||||| Sbjct: 45976 tggcgcctcgccaccggcgacccgctccgcgaggtgtcccgccgcttcggcctcggcatc 45917 Query: 300 tccacatgccacaagctcgtcctcgaggtctgcggggccatca 342 ||||| ||||||| || ||||| ||||||||| ||||||| Sbjct: 45916 tccacctgccacagcatcatcctccaggtctgcgccgccatca 45874 Score = 101 bits (51), Expect = 2e-18 Identities = 135/163 (82%) Strand = Plus / Plus Query: 180 aaggaagacaccatgcttcgcgcggccatccccgtgcgtcagcgcgtcgccgtctgcatc 239 ||||| ||||||| ||| ||| | |||||||| |||| ||||||||| ||||||||||| Sbjct: 7201 aaggaggacaccacgctgcgcaccgccatccctgtgccccagcgcgtcaccgtctgcatc 7260 Query: 240 tggcgcctcgccaccggtgagccgctccgcctcgtctccaagcgcttcggcctcggcatc 299 ||||||||||||||||| || || |||||| || ||| |||||||||||||||||| Sbjct: 7261 tggcgcctcgccaccggcgacccactccgcgaggtgtcccgccgcttcggcctcggcatc 7320 Query: 300 tccacatgccacaagctcgtcctcgaggtctgcggggccatca 342 || || |||||||| || || || ||||||||| ||||||| Sbjct: 7321 tctacctgccacaacatcatcgtccaggtctgcgccgccatca 7363
>gb|AC135431.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683B12, complete sequence Length = 187523 Score = 105 bits (53), Expect = 1e-19 Identities = 131/157 (83%) Strand = Plus / Plus Query: 186 gacaccatgcttcgcgcggccatccccgtgcgtcagcgcgtcgccgtctgcatctggcgc 245 ||||||| ||| ||| | ||||||||||||| |||||||||||||||||| |||||||| Sbjct: 151353 gacaccacgctccgctccgccatccccgtgccgcagcgcgtcgccgtctgcctctggcgc 151412 Query: 246 ctcgccaccggtgagccgctccgcctcgtctccaagcgcttcggcctcggcatctccaca 305 ||||||||||| || || |||||| || ||| ||||| ||||||||||||||||| Sbjct: 151413 ctcgccaccggcgacccactccgcgaggtgtcccgccgctttggcctcggcatctccacc 151472 Query: 306 tgccacaagctcgtcctcgaggtctgcggggccatca 342 |||||||| || || || ||||||||| ||||||| Sbjct: 151473 tgccacaacatcatcgtccaggtctgcgccgccatca 151509 Score = 101 bits (51), Expect = 2e-18 Identities = 135/163 (82%) Strand = Plus / Plus Query: 180 aaggaagacaccatgcttcgcgcggccatccccgtgcgtcagcgcgtcgccgtctgcatc 239 ||||| ||||||| ||| ||| | |||||||| |||| ||||||||| ||||||||||| Sbjct: 187283 aaggaggacaccacgctgcgcaccgccatccctgtgccccagcgcgtcaccgtctgcatc 187342 Query: 240 tggcgcctcgccaccggtgagccgctccgcctcgtctccaagcgcttcggcctcggcatc 299 ||||||||||||||||| || || |||||| || ||| |||||||||||||||||| Sbjct: 187343 tggcgcctcgccaccggcgacccactccgcgaggtgtcccgccgcttcggcctcggcatc 187402 Query: 300 tccacatgccacaagctcgtcctcgaggtctgcggggccatca 342 || || |||||||| || || || ||||||||| ||||||| Sbjct: 187403 tctacctgccacaacatcatcgtccaggtctgcgccgccatca 187445
>dbj|AK120573.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134I11, full insert sequence Length = 822 Score = 77.8 bits (39), Expect = 3e-11 Identities = 48/51 (94%) Strand = Plus / Plus Query: 283 gcttcggcctcggcatctccacatgccacaagctcgtcctcgaggtctgcg 333 ||||||||||||| |||||||| |||||||||||||| ||||||||||||| Sbjct: 1 gcttcggcctcgggatctccacctgccacaagctcgtgctcgaggtctgcg 51 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 435 ggcgtcatcggagccatgtacaccacgcacatccctatcatcgcgcccaag 485 |||||| |||| || || |||||||| |||||||| ||||||||||||||| Sbjct: 153 ggcgtcgtcggcgcgatctacaccacccacatccccatcatcgcgcccaag 203
>gb|AY109036.1| Zea mays PCO143873 mRNA sequence Length = 1057 Score = 75.8 bits (38), Expect = 1e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 432 ccgggcgtcatcggagccatgtacaccacgcacatccctatcatcgcgcccaag 485 ||||||||| | || ||||||||||||||||||||||| ||||||||||||||| Sbjct: 16 ccgggcgtcgtgggcgccatgtacaccacgcacatccccatcatcgcgcccaag 69
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 71.9 bits (36), Expect = 2e-09 Identities = 64/72 (88%), Gaps = 1/72 (1%) Strand = Plus / Minus Query: 174 gtggctaaggaagacacc-atgcttcgcgcggccatccccgtgcgtcagcgcgtcgccgt 232 ||||| ||||| |||||| ||||| ||||| ||||||||||||| ||||| |||||||| Sbjct: 30061756 gtggccaaggaggacacccatgctccgcgcctccatccccgtgcgccagcgtgtcgccgt 30061697 Query: 233 ctgcatctggcg 244 |||||||||||| Sbjct: 30061696 ctgcatctggcg 30061685 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctgcatctgg 242 |||||||||||||| |||||||||||| ||||||||||| Sbjct: 9167809 gccatccccgtgcgccagcgcgtcgccatctgcatctgg 9167847 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctgcatct 240 |||||||| ||||| |||||||||||||||||||||| Sbjct: 30062368 gccatccctgtgcgccagcgcgtcgccgtctgcatct 30062332 Score = 48.1 bits (24), Expect = 0.027 Identities = 61/72 (84%), Gaps = 1/72 (1%) Strand = Plus / Plus Query: 174 gtggctaaggaagacacc-atgcttcgcgcggccatccccgtgcgtcagcgcgtcgccgt 232 ||||| ||||| |||||| |||| ||||| |||||||| |||| |||||| ||||||| Sbjct: 9168046 gtggccaaggaggacacccatgccccgcgccgccatccctatgcgccagcgcatcgccgt 9168105 Query: 233 ctgcatctggcg 244 ||||||||||| Sbjct: 9168106 ttgcatctggcg 9168117 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctg 235 ||||||||||| || |||| |||||||||||| Sbjct: 1111640 gccatccccgtccgccagcacgtcgccgtctg 1111609
>gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic sequence, complete sequence Length = 163972 Score = 71.9 bits (36), Expect = 2e-09 Identities = 64/72 (88%), Gaps = 1/72 (1%) Strand = Plus / Plus Query: 174 gtggctaaggaagacacc-atgcttcgcgcggccatccccgtgcgtcagcgcgtcgccgt 232 ||||| ||||| |||||| ||||| ||||| ||||||||||||| ||||| |||||||| Sbjct: 162289 gtggccaaggaggacacccatgctccgcgcctccatccccgtgcgccagcgtgtcgccgt 162348 Query: 233 ctgcatctggcg 244 |||||||||||| Sbjct: 162349 ctgcatctggcg 162360 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctgcatct 240 |||||||| ||||| |||||||||||||||||||||| Sbjct: 161677 gccatccctgtgcgccagcgcgtcgccgtctgcatct 161713
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 71.9 bits (36), Expect = 2e-09 Identities = 64/72 (88%), Gaps = 1/72 (1%) Strand = Plus / Plus Query: 174 gtggctaaggaagacacc-atgcttcgcgcggccatccccgtgcgtcagcgcgtcgccgt 232 ||||| ||||| |||||| ||||| ||||| ||||||||||||| ||||| |||||||| Sbjct: 45995 gtggccaaggaggacacccatgctccgcgcctccatccccgtgcgccagcgtgtcgccgt 46054 Query: 233 ctgcatctggcg 244 |||||||||||| Sbjct: 46055 ctgcatctggcg 46066 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctgcatct 240 |||||||| ||||| |||||||||||||||||||||| Sbjct: 45383 gccatccctgtgcgccagcgcgtcgccgtctgcatct 45419
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 71.9 bits (36), Expect = 2e-09 Identities = 64/72 (88%), Gaps = 1/72 (1%) Strand = Plus / Minus Query: 174 gtggctaaggaagacacc-atgcttcgcgcggccatccccgtgcgtcagcgcgtcgccgt 232 ||||| ||||| |||||| ||||| ||||| ||||||||||||| ||||| |||||||| Sbjct: 30153178 gtggccaaggaggacacccatgctccgcgcctccatccccgtgcgccagcgtgtcgccgt 30153119 Query: 233 ctgcatctggcg 244 |||||||||||| Sbjct: 30153118 ctgcatctggcg 30153107 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctgcatctgg 242 |||||||||||||| |||||||||||| ||||||||||| Sbjct: 9165642 gccatccccgtgcgccagcgcgtcgccatctgcatctgg 9165680 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctgcatct 240 |||||||| ||||| |||||||||||||||||||||| Sbjct: 30153790 gccatccctgtgcgccagcgcgtcgccgtctgcatct 30153754 Score = 48.1 bits (24), Expect = 0.027 Identities = 61/72 (84%), Gaps = 1/72 (1%) Strand = Plus / Plus Query: 174 gtggctaaggaagacacc-atgcttcgcgcggccatccccgtgcgtcagcgcgtcgccgt 232 ||||| ||||| |||||| |||| ||||| |||||||| |||| |||||| ||||||| Sbjct: 9165879 gtggccaaggaggacacccatgccccgcgccgccatccctatgcgccagcgcatcgccgt 9165938 Query: 233 ctgcatctggcg 244 ||||||||||| Sbjct: 9165939 ttgcatctggcg 9165950 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctg 235 ||||||||||| || |||| |||||||||||| Sbjct: 1111638 gccatccccgtccgccagcacgtcgccgtctg 1111607
>gb|AC108500.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1280_A04, complete sequence Length = 88553 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctgcatctggcg 244 ||||||||||||| |||||||||||||||||||||||||| Sbjct: 7630 gccatccccgtgcaccagcgcgtcgccgtctgcatctggcg 7590 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 205 ccatccccgtgcgtcagcgcgtcgccgtctgcatctggcg 244 |||||| | |||| |||||||||||||||||||||||||| Sbjct: 7333 ccatcctcatgcgccagcgcgtcgccgtctgcatctggcg 7294
>gb|AC108876.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1525_A02, complete sequence Length = 93826 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctgcatctggcg 244 ||||||||||||| |||||||||||||||||||||||||| Sbjct: 90142 gccatccccgtgcaccagcgcgtcgccgtctgcatctggcg 90102 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 205 ccatccccgtgcgtcagcgcgtcgccgtctgcatctggcg 244 |||||| | |||| |||||||||||||||||||||||||| Sbjct: 89845 ccatcctcatgcgccagcgcgtcgccgtctgcatctggcg 89806
>gb|AC107315.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032O19, from chromosome 3, complete sequence Length = 142248 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctgcatctgg 242 |||||||||||||| |||||||||||| ||||||||||| Sbjct: 118582 gccatccccgtgcgccagcgcgtcgccatctgcatctgg 118544 Score = 48.1 bits (24), Expect = 0.027 Identities = 61/72 (84%), Gaps = 1/72 (1%) Strand = Plus / Minus Query: 174 gtggctaaggaagacacc-atgcttcgcgcggccatccccgtgcgtcagcgcgtcgccgt 232 ||||| ||||| |||||| |||| ||||| |||||||| |||| |||||| ||||||| Sbjct: 118345 gtggccaaggaggacacccatgccccgcgccgccatccctatgcgccagcgcatcgccgt 118286 Query: 233 ctgcatctggcg 244 ||||||||||| Sbjct: 118285 ttgcatctggcg 118274
>gb|AC134238.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0016G06, complete sequence Length = 119910 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctgcatctgg 242 |||||||||||||| |||||||||||| ||||||||||| Sbjct: 110989 gccatccccgtgcgccagcgcgtcgccatctgcatctgg 111027 Score = 48.1 bits (24), Expect = 0.027 Identities = 61/72 (84%), Gaps = 1/72 (1%) Strand = Plus / Plus Query: 174 gtggctaaggaagacacc-atgcttcgcgcggccatccccgtgcgtcagcgcgtcgccgt 232 ||||| ||||| |||||| |||| ||||| |||||||| |||| |||||| ||||||| Sbjct: 111226 gtggccaaggaggacacccatgccccgcgccgccatccctatgcgccagcgcatcgccgt 111285 Query: 233 ctgcatctggcg 244 ||||||||||| Sbjct: 111286 ttgcatctggcg 111297
>ref|XM_463393.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1029 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 205 ccatccccgtgcgtcagcgcgtcgccgtctgcatctggcgcctcgccaccggtgagccgc 264 ||||||| |||| |||||||| ||||||||| ||||||||||| |||||| |||||| Sbjct: 775 ccatccctgtgccccagcgcgttgccgtctgcctctggcgcctcaccaccgacaagccgc 716 Query: 265 tccgc 269 ||||| Sbjct: 715 tccgc 711
>dbj|AP003278.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0518F01 Length = 154541 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 205 ccatccccgtgcgtcagcgcgtcgccgtctgcatctggcgcctcgccaccggtgagccgc 264 ||||||| |||| |||||||| ||||||||| ||||||||||| |||||| |||||| Sbjct: 8965 ccatccctgtgccccagcgcgttgccgtctgcctctggcgcctcaccaccgacaagccgc 9024 Query: 265 tccgc 269 ||||| Sbjct: 9025 tccgc 9029
>dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025A05 Length = 154298 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 205 ccatccccgtgcgtcagcgcgtcgccgtctgcatctggcgcctcgccaccggtgagccgc 264 ||||||| |||| |||||||| ||||||||| ||||||||||| |||||| |||||| Sbjct: 109571 ccatccctgtgccccagcgcgttgccgtctgcctctggcgcctcaccaccgacaagccgc 109630 Query: 265 tccgc 269 ||||| Sbjct: 109631 tccgc 109635
>ref|XM_475384.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 396 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 205 ccatccccgtgcgtcagcgcgtcgccgtctgcatctggcg 244 |||||| | |||| |||||||||||||||||||||||||| Sbjct: 128 ccatcctcatgcgccagcgcgtcgccgtctgcatctggcg 167
>dbj|AP006407.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT23O19, TM0297a, complete sequence Length = 61781 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 207 atccccgtgcgtcagcgcgtcgccgtctgcatctggcgcctcgccaccgg 256 |||||||| || |||||||||||||||||||| ||| | || |||||||| Sbjct: 31142 atccccgtccgccagcgcgtcgccgtctgcatatggaggcttgccaccgg 31093
>ref|XM_467257.1| Oryza sativa (japonica cultivar-group), mRNA Length = 567 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Plus Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctgcatctggcgcctcgcca 252 ||||||||||| || |||||| || |||| ||| ||||||||||||||| Sbjct: 340 gccatccccgtccgccagcgcatcaccgtatgcgtctggcgcctcgcca 388
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Plus Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctgcatctggcgcctcgcca 252 ||||||||||| || |||||| || |||| ||| ||||||||||||||| Sbjct: 28504808 gccatccccgtccgccagcgcatcaccgtatgcgtctggcgcctcgcca 28504856 Score = 40.1 bits (20), Expect = 6.7 Identities = 41/48 (85%) Strand = Plus / Plus Query: 39 ctgtgggtcaaggaccggtcgcaggcgtggtgggaccagtgcaacagc 86 |||||||| | ||||||||||| | ||||||||||| ||||| |||| Sbjct: 28504684 ctgtgggtgatggaccggtcgcgcgtgtggtgggacctgtgcagcagc 28504731
>dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1148_D05 Length = 155146 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Plus Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctgcatctggcgcctcgcca 252 ||||||||||| || |||||| || |||| ||| ||||||||||||||| Sbjct: 128929 gccatccccgtccgccagcgcatcaccgtatgcgtctggcgcctcgcca 128977 Score = 40.1 bits (20), Expect = 6.7 Identities = 41/48 (85%) Strand = Plus / Plus Query: 39 ctgtgggtcaaggaccggtcgcaggcgtggtgggaccagtgcaacagc 86 |||||||| | ||||||||||| | ||||||||||| ||||| |||| Sbjct: 128805 ctgtgggtgatggaccggtcgcgcgtgtggtgggacctgtgcagcagc 128852
>dbj|AP004786.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017H11 Length = 158374 Score = 50.1 bits (25), Expect = 0.007 Identities = 43/49 (87%) Strand = Plus / Plus Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctgcatctggcgcctcgcca 252 ||||||||||| || |||||| || |||| ||| ||||||||||||||| Sbjct: 73649 gccatccccgtccgccagcgcatcaccgtatgcgtctggcgcctcgcca 73697 Score = 40.1 bits (20), Expect = 6.7 Identities = 41/48 (85%) Strand = Plus / Plus Query: 39 ctgtgggtcaaggaccggtcgcaggcgtggtgggaccagtgcaacagc 86 |||||||| | ||||||||||| | ||||||||||| ||||| |||| Sbjct: 73525 ctgtgggtgatggaccggtcgcgcgtgtggtgggacctgtgcagcagc 73572
>gb|AE004961.1| Pseudomonas aeruginosa PAO1, section 522 of 529 of the complete genome Length = 10766 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 155 cgatgcgctcggctccgcggtgg 177 ||||||||||||||||||||||| Sbjct: 7447 cgatgcgctcggctccgcggtgg 7469
>gb|AC010692.4| Drosophila melanogaster 3L BAC RP98-11B23 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179164 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 116 cgccttcaggatgggccggga 136 ||||||||||||||||||||| Sbjct: 74723 cgccttcaggatgggccggga 74703
>gb|AE003533.4| Drosophila melanogaster chromosome 3L, section 52 of 83 of the complete sequence Length = 289141 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 cgccttcaggatgggccggga 136 ||||||||||||||||||||| Sbjct: 72767 cgccttcaggatgggccggga 72787
>ref|XM_958160.1| Neurospora crassa OR74A ATP SYNTHASE BETA CHAIN, MITOCHONDRIAL PRECURSOR (NCU05430.1) partial mRNA Length = 1563 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 gccacaagctcgtcctcgaggtct 330 |||| ||||||||||||||||||| Sbjct: 245 gccagaagctcgtcctcgaggtct 268
>ref|XM_325284.1| Neurospora crassa OR74A ATP SYNTHASE BETA CHAIN, MITOCHONDRIAL PRECURSOR (NCU05430.1) partial mRNA Length = 1563 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 gccacaagctcgtcctcgaggtct 330 |||| ||||||||||||||||||| Sbjct: 245 gccagaagctcgtcctcgaggtct 268
>gb|AC145474.2| Rattus norvegicus chromosome 1 clone RP32-113N8 map q32, complete sequence Length = 137003 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 taaggaagacaccatgcttc 198 |||||||||||||||||||| Sbjct: 85753 taaggaagacaccatgcttc 85734
>ref|XM_798551.1| Trypanosoma brucei TREU927 endo-beta-N-acetylglucosaminidase (Tb09.160.2050) partial mRNA Length = 3156 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 tcgccgccgcgtgcaggcca 25 |||||||||||||||||||| Sbjct: 1200 tcgccgccgcgtgcaggcca 1219
>emb|BX640506.12| Zebrafish DNA sequence from clone DKEY-271E14 in linkage group 12, complete sequence Length = 196667 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 tctccacatgccacaagctc 317 |||||||||||||||||||| Sbjct: 195373 tctccacatgccacaagctc 195392
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 cgatgaggccgccgccggca 396 |||||||||||||||||||| Sbjct: 2644142 cgatgaggccgccgccggca 2644161
>emb|X53720.1|NCF1ATPB Neurospora crassa mRNA for mitochondrial F(1)-ATPase beta-subunit precursor Length = 1722 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 gccacaagctcgtcctcgaggtct 330 |||| ||||||||||||||||||| Sbjct: 272 gccagaagctcgtcctcgaggtct 295
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29 Length = 321250 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 gcccgatgaggccgccgccg 393 |||||||||||||||||||| Sbjct: 145374 gcccgatgaggccgccgccg 145393
>emb|AL355933.1|NCB8B20 Neurospora crassa DNA linkage group II BAC clone B8B20 Length = 86476 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 gccacaagctcgtcctcgaggtct 330 |||| ||||||||||||||||||| Sbjct: 59432 gccagaagctcgtcctcgaggtct 59409
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 cgtgcgtcagcgcgtcgccg 231 |||||||||||||||||||| Sbjct: 1173456 cgtgcgtcagcgcgtcgccg 1173437
>gb|AC105363.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1705B08, complete sequence Length = 100986 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 204 gccatccccgtgcgtcagcgcgtcgccgtctg 235 ||||||||||| || |||| |||||||||||| Sbjct: 15344 gccatccccgtccgccagcacgtcgccgtctg 15313
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 ccaagcgcttcggcctcggc 296 |||||||||||||||||||| Sbjct: 2486744 ccaagcgcttcggcctcggc 2486763
>gb|AF123319.1|AF123319 Streptomyces coelicolor hypothetical protein gene, partial cds; FtsI (ftsI) gene, complete cds; and UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase MurE (murE) gene, partial cds Length = 2951 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 gcccgatgaggccgccgccg 393 |||||||||||||||||||| Sbjct: 76 gcccgatgaggccgccgccg 57
>gb|M84192.1|NEUATPB N.crassa mitochondrial ATPase beta-subunit (ATP-2) gene, complete cds Length = 3755 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 gccacaagctcgtcctcgaggtct 330 |||| ||||||||||||||||||| Sbjct: 1812 gccagaagctcgtcctcgaggtct 1835
>gb|AC162441.11| Mus musculus chromosome 1, clone RP23-2E23, complete sequence Length = 225487 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 catctccacatgccacaagc 315 |||||||||||||||||||| Sbjct: 159307 catctccacatgccacaagc 159288 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,065,795 Number of Sequences: 3902068 Number of extensions: 3065795 Number of successful extensions: 59058 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58070 Number of HSP's gapped (non-prelim): 988 length of query: 492 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 470 effective length of database: 17,147,199,772 effective search space: 8059183892840 effective search space used: 8059183892840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
