Clone Information

BLAST Search Result

Clone Name	bah63p20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PSD4_ARATH (P55034) 26S proteasome non-ATPase regulatory subunit...	258	1e-68
2	RPN10_SCHPO (O94444) 26S proteasome regulatory subunit rpn10	157	2e-38
3	PSD4_HUMAN (P55036) 26S proteasome non-ATPase regulatory subunit...	152	5e-37
4	PSD4_MOUSE (O35226) 26S proteasome non-ATPase regulatory subunit...	152	5e-37
5	RPN10_YEAST (P38886) 26S proteasome regulatory subunit RPN10	146	3e-35
6	PSD4_DROME (P55035) 26S proteasome non-ATPase regulatory subunit...	138	1e-32
7	PSD4_SCHMA (O17453) 26S proteasome non-ATPase regulatory subunit...	132	5e-31
8	GUAA_BRUME (Q8YBL2) GMP synthase [glutamine-hydrolyzing] (EC 6.3...	40	0.004
9	YIBA_ECOLI (P0ADK6) Protein yibA	35	0.14
10	YIBA_ECO57 (P0ADK7) Protein yibA	35	0.14
11	ILVH_BUCBP (Q89AP8) Acetolactate synthase small subunit (EC 2.2....	34	0.24
12	SNUT3_XENTR (Q6DDA4) U4/U6.U5 tri-snRNP-associated protein 3	32	0.92
13	LWA_ANTEL (Q16992) LWamide neuropeptides precursor [Contains: LW...	32	1.6
14	CARB_CAUCR (Q9A4D6) Carbamoyl-phosphate synthase large chain (EC...	32	1.6
15	YT44_STRFR (P20188) Hypothetical 44.4 kDa protein in transposon ...	30	3.5
16	LWA_ANESU (Q17093) LWamide neuropeptides precursor [Contains: LW...	30	4.6
17	Y760_HELPJ (Q9ZL83) UPF0144 protein jhp_0697	30	4.6
18	SNUT3_XENLA (Q6GLZ8) U4/U6.U5 tri-snRNP-associated protein 3	30	4.6
19	IF2_BRUSU (Q8FXT2) Translation initiation factor IF-2	30	6.0
20	IF2_BRUAB (Q57AA0) Translation initiation factor IF-2	30	6.0
21	IF2_BRUA2 (Q2YQR7) Translation initiation factor IF-2	30	6.0
22	CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel ...	29	7.8

>PSD4_ARATH (P55034) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A) (Multiubiquitin
           chain-binding protein)
          Length = 386

 Score =  258 bits (658), Expect = 1e-68
 Identities = 124/170 (72%), Positives = 143/170 (84%), Gaps = 1/170 (0%)
 Frame = +1

Query: 52  MVLESTMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVMTMAGKGVR 231
           MVLE+TMICIDNSEWMRNGDYSPSR QAQ +AVNL+CGAKTQSNPENTVG++TMAGKGVR
Sbjct: 1   MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVR 60

Query: 232 VLVTPTSDLGKILACMHGLEVGXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKY 411
           VL TPTSDLGKILACMHGL+VG                KHRQNK Q+QRIIVF GSP+KY
Sbjct: 61  VLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKY 120

Query: 412 DKKVLETIGKKLKKNNVALDVVDFGETDD-EKPEKLEALIAAVNSSDSSH 558
           +KK LE +GK+LKKN+V+LD+V+FGE DD EKP+KLEAL+ AVN++D SH
Sbjct: 121 EKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNNDGSH 170

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>RPN10_SCHPO (O94444) 26S proteasome regulatory subunit rpn10|
          Length = 243

 Score =  157 bits (397), Expect = 2e-38
 Identities = 82/169 (48%), Positives = 105/169 (62%)
 Frame = +1

Query: 52  MVLESTMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVMTMAGKGVR 231
           MVLE+TMI IDNSEWM NGDY P+RF+AQ D V++I   K   NPEN  G+MT+     +
Sbjct: 1   MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQ 60

Query: 232 VLVTPTSDLGKILACMHGLEVGXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKY 411
           VL T T D GK L+ MH L V                 KHR+NK Q+QRI+ F+GSP+  
Sbjct: 61  VLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVE 120

Query: 412 DKKVLETIGKKLKKNNVALDVVDFGETDDEKPEKLEALIAAVNSSDSSH 558
           D+K L  + K++KKNNVA+D++  GE  +E    L+  I A NSSDS H
Sbjct: 121 DEKNLIRLAKRMKKNNVAIDIIHIGELQNE--SALQHFIDAANSSDSCH 167

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>PSD4_HUMAN (P55036) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A) (Rpn10)
           (Multiubiquitin chain-binding protein) (Antisecretory
           factor 1) (AF) (ASF)
          Length = 377

 Score =  152 bits (385), Expect = 5e-37
 Identities = 77/168 (45%), Positives = 110/168 (65%)
 Frame = +1

Query: 52  MVLESTMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVMTMAGKGVR 231
           MVLESTM+C+DNSE+MRNGD+ P+R QAQ DAVN++C +KT+SNPEN VG++T+A     
Sbjct: 1   MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLA-NDCE 59

Query: 232 VLVTPTSDLGKILACMHGLEVGXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKY 411
           VL T T D G+IL+ +H ++                  KHRQ K  + RII F+GSPV+ 
Sbjct: 60  VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119

Query: 412 DKKVLETIGKKLKKNNVALDVVDFGETDDEKPEKLEALIAAVNSSDSS 555
           ++K L  + K+LKK  V +D+++FGE ++   EKL A +  +N  D +
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGT 166

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>PSD4_MOUSE (O35226) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A) (Rpn10)
           (Multiubiquitin chain-binding protein)
          Length = 376

 Score =  152 bits (385), Expect = 5e-37
 Identities = 77/168 (45%), Positives = 110/168 (65%)
 Frame = +1

Query: 52  MVLESTMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVMTMAGKGVR 231
           MVLESTM+C+DNSE+MRNGD+ P+R QAQ DAVN++C +KT+SNPEN VG++T+A     
Sbjct: 1   MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLA-NDCE 59

Query: 232 VLVTPTSDLGKILACMHGLEVGXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKY 411
           VL T T D G+IL+ +H ++                  KHRQ K  + RII F+GSPV+ 
Sbjct: 60  VLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVED 119

Query: 412 DKKVLETIGKKLKKNNVALDVVDFGETDDEKPEKLEALIAAVNSSDSS 555
           ++K L  + K+LKK  V +D+++FGE ++   EKL A +  +N  D +
Sbjct: 120 NEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGT 166

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>RPN10_YEAST (P38886) 26S proteasome regulatory subunit RPN10|
          Length = 268

 Score =  146 bits (369), Expect = 3e-35
 Identities = 79/171 (46%), Positives = 110/171 (64%), Gaps = 2/171 (1%)
 Frame = +1

Query: 52  MVLESTMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVMTMAGKGVR 231
           MVLE+T++ IDNSE+ RNGD+  +RF+AQ D+V  I  AK  SNPENTVG+++ AG   R
Sbjct: 1   MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPR 60

Query: 232 VLVTPTSDLGKILACMHGLEVGXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKY 411
           VL T T++ GKILA +H  ++                 KHRQNK Q QRI+ F+ SP+  
Sbjct: 61  VLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD 120

Query: 412 DKKVLETIGKKLKKNNVALDVVDFGETDDEKPEKLEALIAAVNS--SDSSH 558
            +  L  + K LKKNNVA+D+++FGE  ++  E L+  IAAVN+   ++SH
Sbjct: 121 SRDELIRLAKTLKKNNVAVDIINFGEI-EQNTELLDEFIAAVNNPQEETSH 170

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>PSD4_DROME (P55035) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A) (Multiubiquitin
           chain-binding protein) (54 kDa subunit of mu particle)
           (p54)
          Length = 396

 Score =  138 bits (347), Expect = 1e-32
 Identities = 74/168 (44%), Positives = 101/168 (60%)
 Frame = +1

Query: 52  MVLESTMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVMTMAGKGVR 231
           MVLESTMIC DNS++ RNGDY P+R   Q D +NL+C  K +SNPEN VG+MT++   V 
Sbjct: 1   MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNT-VE 59

Query: 232 VLVTPTSDLGKILACMHGLEVGXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKY 411
           VL T TSD G+I + MH ++                  KHRQ K  + RI+VF+GSP+ +
Sbjct: 60  VLATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINH 119

Query: 412 DKKVLETIGKKLKKNNVALDVVDFGETDDEKPEKLEALIAAVNSSDSS 555
           ++  L    K+LKK  V +D+V FG+  +   E L A I A+N  D +
Sbjct: 120 EEGDLVKQAKRLKKEKVNVDIVSFGDHGNNN-EILTAFINALNGKDGT 166

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>PSD4_SCHMA (O17453) 26S proteasome non-ATPase regulatory subunit 4 (26S|
           proteasome regulatory subunit S5A)
          Length = 420

 Score =  132 bits (333), Expect = 5e-31
 Identities = 69/168 (41%), Positives = 103/168 (61%)
 Frame = +1

Query: 52  MVLESTMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVMTMAGKGVR 231
           M  E+T+I +DNS++MRNGD+ P+R QAQ DAV LIC +K Q NPENT+G++++A     
Sbjct: 1   MSQEATIIAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLA--NTE 58

Query: 232 VLVTPTSDLGKILACMHGLEVGXXXXXXXXXXXXXXXXKHRQNKRQQQRIIVFIGSPVKY 411
           VL T T+D+ KI   +H +E                  +HRQ + Q+ RI+ FIGSP+  
Sbjct: 59  VLCTLTNDVSKIYNRLHLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIGSPILE 118

Query: 412 DKKVLETIGKKLKKNNVALDVVDFGETDDEKPEKLEALIAAVNSSDSS 555
           D+K L  + K+LKK  V +D+++FGE +  + +KL   I  +N  D +
Sbjct: 119 DEKELTRLAKRLKKEKVNVDIINFGENETNE-QKLSEFIDTLNGKDGT 165

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>GUAA_BRUME (Q8YBL2) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 507

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
 Frame = +3

Query: 69  DDLHRQLGVDAERRLLAVPLPGAGRRRQ---PHLRRQDPVEPGEYGGRHDDG----RQGR 227
           D++ +    DA  +  AV LP   R R    PHLR +  +  G++GGRHD G    R   
Sbjct: 428 DEIRKAGLYDAIWQAFAVLLPVQDRGRDGGWPHLRIRLRLARGDFGGRHDGGFLPLRHEF 487

Query: 228 ARAC-HPHQR--PRQDPR 272
            R C HPH +  PR  PR
Sbjct: 488 PRQCGHPHHQRSPRHQPR 505

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>YIBA_ECOLI (P0ADK6) Protein yibA|
          Length = 280

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 355 QNKRQQQRIIVFIGSPVKYDKKVLETIGKKLKKNNVALDVVD-FGETDDE 501
           Q+K ++ RI   IG   + DK+VL  +  +LKKN V  D+++  GE  D+
Sbjct: 202 QDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAAGELGDK 251

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>YIBA_ECO57 (P0ADK7) Protein yibA|
          Length = 280

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 355 QNKRQQQRIIVFIGSPVKYDKKVLETIGKKLKKNNVALDVVD-FGETDDE 501
           Q+K ++ RI   IG   + DK+VL  +  +LKKN V  D+++  GE  D+
Sbjct: 202 QDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAAGELGDK 251

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>ILVH_BUCBP (Q89AP8) Acetolactate synthase small subunit (EC 2.2.1.6) (AHAS)|
           (Acetohydroxy-acid synthase small subunit) (ALS)
          Length = 159

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 18/45 (40%), Positives = 29/45 (64%)
 Frame = +1

Query: 412 DKKVLETIGKKLKKNNVALDVVDFGETDDEKPEKLEALIAAVNSS 546
           DKKV+E IGK+L K    +DV+   E +DE+  K E ++  +N++
Sbjct: 54  DKKVIEQIGKQLHK---LIDVLKVTEIEDEEHFKREIMLIKINNT 95

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>SNUT3_XENTR (Q6DDA4) U4/U6.U5 tri-snRNP-associated protein 3|
          Length = 156

 Score = 32.3 bits (72), Expect = 0.92
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +3

Query: 15  NPRLQRDPQRRNHGARVDDDLHRQLGVDAERRLLAVPLPGAGRRRQPHLRRQDPVEPGEY 194
           +P  +R+ +R    +R  +   R+     ERR      P   R R P   R   + PG  
Sbjct: 8   SPERRRERRRSRSASRERERRRRERSRSRERRRSRSRSPHRRRSRSPRRHRSSSISPGRL 67

Query: 195 GGRHDDGRQ 221
             R DD ++
Sbjct: 68  KDRRDDDKK 76

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>LWA_ANTEL (Q16992) LWamide neuropeptides precursor [Contains: LWamide I;|
           Metamorphosin A (LWamide II) (MMA); LWamide III; LWamide
           IV; LWamide V; LWamide VI; LWamide VII; LWamide VIII;
           LWamide IX]
          Length = 514

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
 Frame = +3

Query: 138 GRRRQPHL--RRQDPVEPGEYGGRHDDGRQGRARACHPHQ----RPRQDPRLYAR-AGS 293
           G+R+ P L  R  DP +PG +G R + G  G  R+  P Q      RQ+P L+ R AGS
Sbjct: 415 GKRQNPGLWGRSADPQQPGLWGKRQNPGLWG--RSADPQQPGLWGKRQNPGLWGRSAGS 471



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
 Frame = +3

Query: 138 GRRRQPHL--RRQDPVEPGEYGGRHDDGRQGRARACHPHQ----RPRQDPRLYARA 287
           G+R+ P L  R  DP +PG +G R + G  G  R+  P Q      RQ+P L+ R+
Sbjct: 394 GKRQNPGLWGRSADPQQPGLWGKRQNPGLWG--RSADPQQPGLWGKRQNPGLWGRS 447



 Score = 31.2 bits (69), Expect = 2.1
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
 Frame = +3

Query: 138 GRRRQPHL--RRQDPVEPGEYGGRHDDGRQGRARACHPHQ----RPRQDPRLYARA 287
           G+R+ P L  R  DP +PG +G R + G  G  R+  P Q      RQ+P L+ R+
Sbjct: 291 GKRQNPGLWGRSADPQQPGLWGKRQNPGLWG--RSADPQQPGLWGKRQNPGLWGRS 344



 Score = 29.6 bits (65), Expect = 6.0
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
 Frame = +3

Query: 138 GRRRQPHL--RRQDPVEPGEYGGRHDDGRQGRARACHPHQ----RPRQDPRLYARA 287
           G+R+ P    R  DP +PG +G R + G  G  R+  P Q      RQ+P L+ R+
Sbjct: 373 GKRQNPGFWGRSADPQQPGLWGKRQNPGLWG--RSADPQQPGLWGKRQNPGLWGRS 426

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>CARB_CAUCR (Q9A4D6) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1099

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -3

Query: 191 FSGFDWVLAPQMRLTASACA--WKRDGE 114
           F+G D VL P+MR T       WKRDGE
Sbjct: 916 FAGVDTVLGPEMRSTGEVMGLDWKRDGE 943

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>YT44_STRFR (P20188) Hypothetical 44.4 kDa protein in transposon Tn4556|
          Length = 395

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
 Frame = +3

Query: 21  RLQRDPQRRNHGARVDDDLHRQLGVDAERRLLAV-PLPGAGRRRQPHLRRQDPVEPGEYG 197
           R+   P+R  HG          +GV A++R LAV P+P  G+ RQP  R      P    
Sbjct: 179 RVVHRPRREVHGGGQQRRQAASVGVPAQQRRLAVHPVP--GQLRQPARR-----YPRHIN 231

Query: 198 GRHDD--------GRQGRARACHPHQRPRQDP 269
           G H +         R    R  HPH RP   P
Sbjct: 232 GAHSERGDLLRPLQRPLHLRTRHPH-RPAPQP 262

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>LWA_ANESU (Q17093) LWamide neuropeptides precursor [Contains: LWamide I;|
           LWamide II; Metamorphosin A (MMA); IWamide] (Fragment)
          Length = 126

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
 Frame = +3

Query: 138 GRRRQPHL--RRQDPVEPGEYGGRHDDGRQGRARACHPHQR----PRQDPRLYAR----- 284
           G+R+QP L  R  DP + G +G R + G  G  R+  P Q      RQ P L+ R     
Sbjct: 21  GKRQQPGLWGRSADPQQAGLWGKRQNPGLWG--RSADPQQAGLWGKRQHPGLWGRSADPQ 78

Query: 285 -AGSW 296
            AG W
Sbjct: 79  QAGLW 83

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>Y760_HELPJ (Q9ZL83) UPF0144 protein jhp_0697|
          Length = 529

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 8/120 (6%)
 Frame = -2

Query: 345 ESQLSNLNSCSQVCFSSNFQPVHTGEDLAEVAG------GGDKHAHALAGHRHDAHRILR 184
           E +L  L    +  FS     +   +++A +AG      GGDK     AG  HD  + L 
Sbjct: 322 EDELKILIGKMRYRFSFGQNALQHSKEVALLAGLIAEQLGGDKKLARRAGILHDIGKALT 381

Query: 183 VRLGLGAADEVDGVGLRLEAGRRVIAVPHPLRVVYADHRRLEHHG--CAAVGRAAVEGSG 10
             LG       D V L +E  +R    P  +  +YA H   E     CA+V  A    +G
Sbjct: 382 QELGR------DHVNLGVEVCKRHKEDPVVINAIYAHHGHEEIMSVECASVCAADALSAG 435

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>SNUT3_XENLA (Q6GLZ8) U4/U6.U5 tri-snRNP-associated protein 3|
          Length = 158

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 17/69 (24%), Positives = 27/69 (39%)
 Frame = +3

Query: 15  NPRLQRDPQRRNHGARVDDDLHRQLGVDAERRLLAVPLPGAGRRRQPHLRRQDPVEPGEY 194
           +P  +R+ +R    +R  +   R+     ERR      P   R R P   R   + P   
Sbjct: 8   SPERRRERRRSRSASRERERRRRERSRSRERRRSRSRSPHRRRSRSPRRHRSSSISPSRL 67

Query: 195 GGRHDDGRQ 221
             R DD ++
Sbjct: 68  KDRRDDDKK 76

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>IF2_BRUSU (Q8FXT2) Translation initiation factor IF-2|
          Length = 959

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
 Frame = +3

Query: 30  RDPQRRNHGARVDDDLHRQLGVDAERRLLAVPLPGAGRRRQPHLR--RQDPVEPGEYGGR 203
           R  + R   AR   +   +L  +AE R  A     A R  QP  R  R+D   P  YG R
Sbjct: 190 RRAKEREESARRQAEEEARLKAEAEARRKAEE-EAAKRMPQPEARSERRDDARPAPYGAR 248

Query: 204 HDDGRQGRARACHPHQRPRQ 263
                + +     P  RP+Q
Sbjct: 249 PQQAGRPQGGRPQPAGRPQQ 268

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>IF2_BRUAB (Q57AA0) Translation initiation factor IF-2|
          Length = 959

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
 Frame = +3

Query: 30  RDPQRRNHGARVDDDLHRQLGVDAERRLLAVPLPGAGRRRQPHLR--RQDPVEPGEYGGR 203
           R  + R   AR   +   +L  +AE R  A     A R  QP  R  R+D   P  YG R
Sbjct: 190 RRAKEREESARRQAEEEARLKAEAEARRKAEE-EAAKRMPQPEARSERRDDARPAPYGAR 248

Query: 204 HDDGRQGRARACHPHQRPRQ 263
                + +     P  RP+Q
Sbjct: 249 PQQAGRPQGGRPQPAGRPQQ 268

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>IF2_BRUA2 (Q2YQR7) Translation initiation factor IF-2|
          Length = 959

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
 Frame = +3

Query: 30  RDPQRRNHGARVDDDLHRQLGVDAERRLLAVPLPGAGRRRQPHLR--RQDPVEPGEYGGR 203
           R  + R   AR   +   +L  +AE R  A     A R  QP  R  R+D   P  YG R
Sbjct: 190 RRAKEREESARRQAEEEARLKAEAEARRKAEE-EAAKRMPQPEARSERRDDARPAPYGAR 248

Query: 204 HDDGRQGRARACHPHQRPRQ 263
                + +     P  RP+Q
Sbjct: 249 PQQAGRPQGGRPQPAGRPQQ 268

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>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
 Frame = +3

Query: 39   QRRNHGARVDDDLHRQLGVDAER-----RLLAVPLPGAGRRRQPHLRRQDPVE-PGEYGG 200
            Q R+H    D   H   G+DA R     +   +   G   R   H  R+  +E PG + G
Sbjct: 862  QARHHDRARDPSAHAAAGLDARRPWAGSQEAELSREGPYGRESDHQAREGGLEPPGFWEG 921

Query: 201  RHDDGRQGRARACHPHQR 254
              + G+ G     H H++
Sbjct: 922  EAERGKAGDPHRRHAHRQ 939


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.130    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,995,820
Number of Sequences: 219361
Number of extensions: 1350312
Number of successful extensions: 4116
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4105
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result