>gb|AC011283.3| Homo sapiens BAC clone CTD-2016A9 from 7, complete sequence
          Length = 68326

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 461   ttactttgttttgcagtacatta 483
             |||||||||||||||||||||||
Sbjct: 25550 ttactttgttttgcagtacatta 25528

>ref|XM_725809.1| Plasmodium yoelii yoelii str. 17XNL UDP-n-acetylglucosamine
            pyrophosphorylase (PY02947) partial mRNA
          Length = 1725

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 491  aagtaataacaatggtgatagt 512
            ||||||||||||||||||||||
Sbjct: 1491 aagtaataacaatggtgatagt 1512

>gb|AC153128.1| Medicago truncatula chromosome 7 BAC clone mth2-81g19, complete
             sequence
          Length = 85433

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 358   tattttctcttttcacccctt 378
             |||||||||||||||||||||
Sbjct: 44585 tattttctcttttcacccctt 44565

>gb|AC126598.13| Mus musculus chromosome 5, clone RP24-486L9, complete sequence
          Length = 168471

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 179   tgttcatcctggaatggagt 198
             ||||||||||||||||||||
Sbjct: 64100 tgttcatcctggaatggagt 64119

>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus
              region
          Length = 160897

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 318    agggcataattccaacagtc 337
              ||||||||||||||||||||
Sbjct: 137283 agggcataattccaacagtc 137302



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 318    agggcataattccaacagtc 337
              ||||||||||||||||||||
Sbjct: 107433 agggcataattccaacagtc 107414



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   agggcataattccaacagtc 337
             ||||||||||||||||||||
Sbjct: 74670 agggcataattccaacagtc 74651

>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   agggcataattccaacagtc 337
             ||||||||||||||||||||
Sbjct: 35675 agggcataattccaacagtc 35656

>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence
          Length = 114996

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   agggcataattccaacagtc 337
             ||||||||||||||||||||
Sbjct: 21211 agggcataattccaacagtc 21192

>gb|AC004949.1| Homo sapiens PAC clone RP5-1008N9 from 7, complete sequence
          Length = 172366

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 443    ttaataccaaacacagtgttactt 466
              |||||| |||||||||||||||||
Sbjct: 123223 ttaataacaaacacagtgttactt 123246

>gb|AC004964.2| Homo sapiens PAC clone RP5-1106G10 from 7, complete sequence
          Length = 78643

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 534   ttgcacttcactttatttcc 553
             ||||||||||||||||||||
Sbjct: 33079 ttgcacttcactttatttcc 33060

>gb|AC007964.3| Homo sapiens BAC clone GS1-179L18 from 7, complete sequence
          Length = 154706

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   agcaaatgtccaatgttgct 152
             ||||||||||||||||||||
Sbjct: 37872 agcaaatgtccaatgttgct 37853

>gb|AE014818.1| Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete
              sequence
          Length = 252632

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 491    aagtaataacaatggtgata 510
              ||||||||||||||||||||
Sbjct: 238502 aagtaataacaatggtgata 238483

>emb|AL354723.17| Human DNA sequence from clone RP11-526D20 on chromosome 9 Contains the
             gene for voltage-gated potassium channel (Kv11.1), the 3'
             end of gene KIAA0020 and a CpG island, complete sequence
          Length = 159933

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 448   accaaacacagtgttactttgttt 471
             |||||| |||||||||||||||||
Sbjct: 15802 accaaatacagtgttactttgttt 15825

>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome
          Length = 1512977

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 485     aatgacaagtaataacaatg 504
               ||||||||||||||||||||
Sbjct: 1062494 aatgacaagtaataacaatg 1062475

>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome
          Length = 1516355

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 485     aatgacaagtaataacaatg 504
               ||||||||||||||||||||
Sbjct: 1083783 aatgacaagtaataacaatg 1083764

>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12
          Length = 349354

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    cgtcagcgcgaacttgtagc 126
              ||||||||||||||||||||
Sbjct: 337487 cgtcagcgcgaacttgtagc 337468

>emb|AL691413.5| Mouse DNA sequence from clone RP23-309E11 on chromosome 11 Contains a
              microtubule-associated protein 1 light chain 3 (Map1lc3)
              pseudogene, an interferon induced transmembrane protein
              3-like (Ifitm3l) pseudogene, two novel pseudogenes, two
              novel genes, the 3' end of the Osbp2 gene for oxysterol
              binding protein 2 and two CpG islands, complete sequence
          Length = 164047

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 362    ttctcttttcaccccttgat 381
              ||||||||||||||||||||
Sbjct: 116780 ttctcttttcaccccttgat 116799

>gb|AF509771.1| Hordeum vulgare subsp. vulgare isolate NRG048 Rpg1 region, genomic
           sequence
          Length = 6190

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 318 agggcataattccaacagtc 337
           ||||||||||||||||||||
Sbjct: 529 agggcataattccaacagtc 510

>gb|AC092866.6| Homo sapiens 12 BAC RP11-451B3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 53951

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 449   ccaaacacagtgttactttgtttt 472
             ||||||||| ||||||||||||||
Sbjct: 25556 ccaaacacactgttactttgtttt 25533

>gb|AC092452.8| Homo sapiens 12P BAC RP11-207N16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 71506

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 449   ccaaacacagtgttactttgtttt 472
             ||||||||| ||||||||||||||
Sbjct: 18505 ccaaacacactgttactttgtttt 18482

>gb|AC090096.5| Homo sapiens chromosome 8, clone RP11-159C14, complete sequence
          Length = 173158

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 478   acattaaaatgacaagtaat 497
             ||||||||||||||||||||
Sbjct: 72593 acattaaaatgacaagtaat 72612

>gb|AC011884.8| Homo sapiens chromosome , clone RP11-17N6, complete sequence
          Length = 163009

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 478    acattaaaatgacaagtaat 497
              ||||||||||||||||||||
Sbjct: 149992 acattaaaatgacaagtaat 150011

>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 318    agggcataattccaacagtc 337
              ||||||||||||||||||||
Sbjct: 379688 agggcataattccaacagtc 379669



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 318   agggcataattccaacagtc 337
             ||||||||||||||||||||
Sbjct: 91333 agggcataattccaacagtc 91352



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   agggcataattccaacagtc 337
             ||||||||||||||||||||
Sbjct: 86548 agggcataattccaacagtc 86529



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   agggcataattccaacagtc 337
             ||||||||||||||||||||
Sbjct: 79446 agggcataattccaacagtc 79427

>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 533    gttgcacttcactttatttc 552
              ||||||||||||||||||||
Sbjct: 282460 gttgcacttcactttatttc 282441

>gb|AC153556.5| Mus musculus 10 BAC RP23-395M5 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 184751

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 78    gaatccatcaagcaggtcttgagg 101
             |||||||| |||||||||||||||
Sbjct: 39536 gaatccattaagcaggtcttgagg 39559

>emb|AL929213.5| Zebrafish DNA sequence from clone CH211-144A19, complete sequence
          Length = 169897

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 484   aaatgacaagtaataacaat 503
             ||||||||||||||||||||
Sbjct: 68712 aaatgacaagtaataacaat 68731

>emb|Z84556.1|HV1319LRC H.vulgare BARE-1 long terminal repeat DNA; ID E1319LRC
          Length = 523

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 318 agggcataattccaacagtc 337
           ||||||||||||||||||||
Sbjct: 410 agggcataattccaacagtc 391

>emb|Z84542.1|HV1RC12DL H.vulgare BARE-1 long terminal repeat DNA; ID 1RC12DEL
          Length = 652

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 318 agggcataattccaacagtc 337
           ||||||||||||||||||||
Sbjct: 532 agggcataattccaacagtc 513

>emb|Z84547.1|HV4R H.vulgare BARE-1 long terminal repeat DNA; ID 4R
          Length = 472

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 318 agggcataattccaacagtc 337
           ||||||||||||||||||||
Sbjct: 343 agggcataattccaacagtc 324

>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence
          Length = 184425

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   agggcataattccaacagtc 337
             ||||||||||||||||||||
Sbjct: 96797 agggcataattccaacagtc 96778

>gb|AY642925.1| Hordeum vulgare BAC 124C9, complete sequence
          Length = 12258

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 318  agggcataattccaacagtc 337
            ||||||||||||||||||||
Sbjct: 7327 agggcataattccaacagtc 7346

>dbj|AB061327.1| Avena sativa LTR-retrotransposon OARE-1 gag-pol pseudogene for
            polyprotein
          Length = 8665

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 318  agggcataattccaacagtc 337
            ||||||||||||||||||||
Sbjct: 6965 agggcataattccaacagtc 6946


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,017,013
Number of Sequences: 3902068
Number of extensions: 5017013
Number of successful extensions: 90972
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90862
Number of HSP's gapped (non-prelim): 110
length of query: 553
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 530
effective length of database: 17,143,297,704
effective search space: 9085947783120
effective search space used: 9085947783120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)