ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63p05 |
|---|---|
| Clone Library Name | barley_pub |
>PSD13_BOVIN (Q5E964) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 90.9 bits (224), Expect = 3e-18 Identities = 55/162 (33%), Positives = 89/162 (54%) Frame = +2 Query: 113 FLEAQGSTRPELAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDALIQLYTHFISD 292 FL+ S+ P A + L +LY +KLWHQLTL++ F+ GD LI+LY +FIS+ Sbjct: 7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISE 66 Query: 293 FESKINLLKFAHFAVVVSRQYSDKDAGISYLEGVISKLHDTKESRIEEPVLYVKMQIASF 472 FE ++N L + V RQ +D + +S+LE K+ + +E V+ K I + Sbjct: 67 FEHRVNPLSLVEIILHVVRQMTDPNVALSFLEKTREKVKSS-----DEAVILCKTAIGAL 121 Query: 473 LLEKGNQKECKKLVDEGKTTLDSMDDVDPSVHSTYYWLCSQY 598 L G+ + K+ +++ + L ++ V SVHS +Y L S+Y Sbjct: 122 KLNIGDLQVTKETIEDVEEMLSNLPGV-TSVHSRFYDLSSKY 162
>PSD13_MOUSE (Q9WVJ2) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 90.5 bits (223), Expect = 3e-18 Identities = 54/162 (33%), Positives = 90/162 (55%) Frame = +2 Query: 113 FLEAQGSTRPELAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDALIQLYTHFISD 292 FL+ S+ P A + L +LY +KLWHQLTL++ F+ GD LI+LY +FIS+ Sbjct: 7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLEVLDFVQDPCFAQGDGLIKLYENFISE 66 Query: 293 FESKINLLKFAHFAVVVSRQYSDKDAGISYLEGVISKLHDTKESRIEEPVLYVKMQIASF 472 FE ++N L + V RQ +D + +++LE K+ + +E V+ K I + Sbjct: 67 FEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSS-----DEAVILCKTAIGAL 121 Query: 473 LLEKGNQKECKKLVDEGKTTLDSMDDVDPSVHSTYYWLCSQY 598 L G+ + K+ +++ + L+++ V SVHS +Y L S+Y Sbjct: 122 KLNIGDLQATKETIEDVEEMLNNLPGV-TSVHSRFYDLSSKY 162
>PSD13_CHICK (P84169) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 90.5 bits (223), Expect = 3e-18 Identities = 55/162 (33%), Positives = 88/162 (54%) Frame = +2 Query: 113 FLEAQGSTRPELAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDALIQLYTHFISD 292 FL+ S P A + L +LY +KLWHQLTL++ F+ GD LI+LY +FIS+ Sbjct: 7 FLQQSQSAGPGQAAVWHRLEELYNKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISE 66 Query: 293 FESKINLLKFAHFAVVVSRQYSDKDAGISYLEGVISKLHDTKESRIEEPVLYVKMQIASF 472 FE ++N L + V RQ +D +++LE K+ + +E V+ K I + Sbjct: 67 FEHRVNPLSLVEIILHVVRQMTDPTVALTFLEKTREKVKSS-----DEAVILCKTAIGAL 121 Query: 473 LLEKGNQKECKKLVDEGKTTLDSMDDVDPSVHSTYYWLCSQY 598 L G+ + K+ ++E + L+++ V SVHS +Y L S+Y Sbjct: 122 KLNIGDLQVTKETIEEVEEMLNNLPGV-TSVHSRFYDLSSKY 162
>PSD13_HUMAN (Q9UNM6) 26S proteasome non-ATPase regulatory subunit 13 (26S| proteasome regulatory subunit S11) (26S proteasome regulatory subunit p40.5) Length = 376 Score = 88.2 bits (217), Expect = 2e-17 Identities = 53/162 (32%), Positives = 89/162 (54%) Frame = +2 Query: 113 FLEAQGSTRPELAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDALIQLYTHFISD 292 FL+ S+ P + L +LY +KLWHQLTL++ F+ GD LI+LY +FIS+ Sbjct: 7 FLQQSQSSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISE 66 Query: 293 FESKINLLKFAHFAVVVSRQYSDKDAGISYLEGVISKLHDTKESRIEEPVLYVKMQIASF 472 FE ++N L + V RQ +D + +++LE K+ + +E V+ K I + Sbjct: 67 FEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSS-----DEAVILCKTAIGAL 121 Query: 473 LLEKGNQKECKKLVDEGKTTLDSMDDVDPSVHSTYYWLCSQY 598 L G+ + K+ +++ + L+++ V SVHS +Y L S+Y Sbjct: 122 KLNIGDLQVTKETIEDVEEMLNNLPGV-TSVHSRFYDLSSKY 162
>RPN9_SCHPO (Q9US13) Probable 26S proteasome regulatory subunit rpn9| Length = 381 Score = 72.0 bits (175), Expect = 1e-12 Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 1/164 (0%) Frame = +2 Query: 110 EFLEAQGSTRPE-LAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDALIQLYTHFI 286 +FL Q + PE L + Y + DLY+RKLW QLT L F + + LYT+F+ Sbjct: 11 DFLHDQATRAPESLQQSYILMEDLYERKLWKQLTDALIVFFDTP--ETVPLRLPLYTNFV 68 Query: 287 SDFESKINLLKFAHFAVVVSRQYSDKDAGISYLEGVISKLHDTKESRIEEPVLYVKMQIA 466 + F IN LK + + S+ +A L + +++ E + ++ +Y + IA Sbjct: 69 NSFRPNINQLKAVYMGLKAFESCSNDEA----LRNLNQIVNELDEEKYKDAYVYSIVAIA 124 Query: 467 SFLLEKGNQKECKKLVDEGKTTLDSMDDVDPSVHSTYYWLCSQY 598 L G E ++L+ + +D +D V+ +HS+YY + + Y Sbjct: 125 RIKLISGKLDEARELLVKASKIIDHIDYVESLIHSSYYSVSADY 168
>RPN9_YEAST (Q04062) 26S proteasome regulatory subunit RPN9 (Proteasome| non-ATPase subunit 7) Length = 393 Score = 62.0 bits (149), Expect = 1e-09 Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 8/161 (4%) Frame = +2 Query: 140 PELAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDALIQLYTHFISDFESKINLLK 319 P L + Y+ KLW QL+ L +F A ++ ++LY +F+S F KIN L Sbjct: 20 PSLHPLFEQFEKFYEEKLWFQLSESLTKFFDDA--KSTPLRLRLYDNFVSKFYDKINQLS 77 Query: 320 FAHFAVVVSRQYSDKDAGISYLEGVISKLH--DTKESRIE------EPVLYVKMQIASFL 475 + + + D D + YL+ + ++ D+K+ R + +L + +IA Sbjct: 78 VVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTY 137 Query: 476 LEKGNQKECKKLVDEGKTTLDSMDDVDPSVHSTYYWLCSQY 598 L K + + + L+D+ + TLD D + + +++Y SQY Sbjct: 138 LLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQY 178
>ECTB_STRCO (Q93RW1) Diaminobutyrate--2-oxoglutarate transaminase (EC 2.6.1.76)| (Diaminobutyrate--2-oxoglutarate aminotransferase) (L-2,4-diaminobutyric acid transaminase) (DABA aminotransferase) Length = 423 Score = 32.7 bits (73), Expect = 0.82 Identities = 16/42 (38%), Positives = 25/42 (59%) Frame = +2 Query: 65 EGKGSGGDQAMAAPLEFLEAQGSTRPELAEWYAALADLYQRK 190 E +GSG ++ A +E ++ +G AEW ALADL +R+ Sbjct: 194 EDQGSGLNKPAAVIVETVQGEGGINVARAEWLRALADLCERQ 235
>RNP3_METTH (O26784) Ribonuclease P protein component 3 (EC 3.1.26.5) (RNase P| component 3) Length = 245 Score = 32.0 bits (71), Expect = 1.4 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 4/79 (5%) Frame = -1 Query: 551 HRPY-YPMWFSPRLPVSY---TPFDSLSQEENLQSASSHTERALQSVIPWYHAASKLRPQ 384 HR + +P+ + R Y TP D ++ E SS E +L S AS L + Sbjct: 174 HRKFGFPLLLTSRASSIYDLRTPGDIMNLAECFGMESSEAEESLTST-----PASIL--E 226 Query: 383 DSLYRHLYLSTGVKLLPRS 327 DS RHL ++ GV+LLP S Sbjct: 227 DSGNRHLLIAEGVRLLPES 245
>RPOD_BORBU (P52323) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 631 Score = 32.0 bits (71), Expect = 1.4 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = +2 Query: 365 DAGISYLEGVISKLHDTKESRIEEPV-LYVKMQIASFLLEKGNQKECKKLVDEGKTTLDS 541 D G Y++G + K+S E+P+ LY+K FLL + E K +D G++ +++ Sbjct: 121 DLGSGYIKGNV-----LKDSHSEDPIKLYLKEIGKEFLLTGNQEVELAKQMDSGESIIEN 175 Query: 542 MDDVDPSVHSTYY 580 + + V YY Sbjct: 176 ILKNEGLVIENYY 188
>YNB3_SCHPO (Q9USS7) Hypothetical protein C4.03c in chromosome II| Length = 891 Score = 31.6 bits (70), Expect = 1.8 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%) Frame = +2 Query: 293 FESKINLLKFAHF--AVVVSRQYSDKDAGI-SYLEGVISKLHDTKESRIEEPVLYVKMQI 463 ++ K+N AHF AV+ + ++ + +Y V SK +DT I EP++ V +I Sbjct: 578 YDGKLNGALDAHFQTAVLYTTPSGERRVRVVNYCCAVTSKSYDTISLAIVEPIVAVLAKI 637 Query: 464 ASFLLEKGNQKECKKLVDEG 523 AS + G+ K+ + EG Sbjct: 638 ASTNIAAGSLKDTSVRLVEG 657
>FDHD_SULSO (Q97V15) Protein fdhD homolog| Length = 257 Score = 31.2 bits (69), Expect = 2.4 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 3/50 (6%) Frame = +2 Query: 317 KFAHFAVVVSRQYSDKDAGISYL--EGVISKLHDTKE-SRIEEPVLYVKM 457 K FA+++ DK+ + +L EGVI+ +HD ++ ++E V+ VK+ Sbjct: 39 KCEDFAIIMRTPGDDKELSLGFLYSEGVINSIHDVEDIKQVENNVIEVKL 88
>FZOL_SCHPO (Q9USY7) Transmembrane GTPase fzo-like protein (EC 3.6.5.-)| Length = 758 Score = 30.4 bits (67), Expect = 4.1 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 8/101 (7%) Frame = +2 Query: 185 RKLWH--QLTLKLDQFLALAVVQAGDALIQLYTHFISDFESKINLL------KFAHFAVV 340 RK+ H Q T + ++ L A VQ+ I +TH S+ E I+ L K++ F Sbjct: 447 RKVKHEQQFTYQKNESLVEATVQS----ISQHTH--SELEDAIDSLGSFASVKYSGFFFA 500 Query: 341 VSRQYSDKDAGISYLEGVISKLHDTKESRIEEPVLYVKMQI 463 S +DA YLE + + D R EE VL ++ + Sbjct: 501 YQYAISVRDAMQQYLEEKLLESEDYARKRTEEAVLCIQKDV 541
>FN3X_ARATH (Q9LEW8) Hypothetical 35.5 kDa protein At3g61080| Length = 318 Score = 30.0 bits (66), Expect = 5.3 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +2 Query: 128 GSTRPELAEWYAALADLY-QRKLWHQLTLKLDQFLALAVVQAGDALIQ 268 GST P++ W + + Y +++L +QL L DQ+ A+ Q G LIQ Sbjct: 159 GST-PQINTWSSDWIEFYGEKRLGYQLKLARDQYGDSAIYQKGHTLIQ 205
>RAD50_METKA (Q8TXI4) DNA double-strand break repair rad50 ATPase| Length = 876 Score = 30.0 bits (66), Expect = 5.3 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 11/162 (6%) Frame = +2 Query: 113 FLEAQGSTRPELAEWYAALADLYQRKLWHQLTLKLDQFL-----ALAVVQAGDALIQLYT 277 F EA + E+A+ A + +RK TL L +F A +++ +A ++ + Sbjct: 131 FREAVYIRQGEIAKLVEATRE--ERKRIVDRTLGLAEFKKAREQAHELLRVAEAKLETFR 188 Query: 278 HFISDFE-SKINLLKFAHFAVVVSRQYSDKDAGISYLEGVISKLHDTKES--RIEEPVLY 448 + D + SK L + + R+ + + + L+ +++L + K R+E + Sbjct: 189 ERVRDLKGSKKELKRVERELEELKREVKELEPEVEELKERLNELREAKREFERLEGELRL 248 Query: 449 VKMQIASFLLEKGNQKECKKLVDEGKTT---LDSMDDVDPSV 565 ++ +I S KG + + +KLV+EGK L + DV V Sbjct: 249 LENKIESL---KGRRDDLRKLVEEGKEAERELQRLGDVPSKV 287
>ZIPA_VIBVY (Q7MMT6) Cell division protein zipA homolog| Length = 311 Score = 30.0 bits (66), Expect = 5.3 Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 7/148 (4%) Frame = +2 Query: 50 WPGRKEGKGSGGDQAMAAPLEFLEAQGSTRPELAEWYAALADLYQ--RKLWHQLTLKLDQ 223 W +KEGK GD+ PL L+ G + P+ +E Y A D Y+ RK + + ++ Sbjct: 25 WTSKKEGKAKFGDK----PLSKLDL-GESEPKESEMYVAPEDDYEIIRKERKEPAFEDEK 79 Query: 224 FLALAVVQAGDALIQLYTHFISDFESKINLLKFAHFAVVVSRQYSDKDAGISYLEGVISK 403 + + V GD LI H D E+K + KF D D ++ E S Sbjct: 80 PFSTSGV-IGDPLID-DLHSGQDKENKFSQPKF------------DDDITVAEAEAAASI 125 Query: 404 LHDT-----KESRIEEPVLYVKMQIASF 472 D + I+EP+ + +I +F Sbjct: 126 EQDAPAWVEQPQEIDEPLTHHPDEIDAF 153
>ZIPA_VIBVU (Q8DFK4) Cell division protein zipA homolog| Length = 311 Score = 30.0 bits (66), Expect = 5.3 Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 7/148 (4%) Frame = +2 Query: 50 WPGRKEGKGSGGDQAMAAPLEFLEAQGSTRPELAEWYAALADLYQ--RKLWHQLTLKLDQ 223 W +KEGK GD+ PL L+ G + P+ +E Y A D Y+ RK + + ++ Sbjct: 25 WTSKKEGKAKFGDK----PLSKLDL-GESEPKESEMYVAPEDDYEIIRKERKEPAFEDEK 79 Query: 224 FLALAVVQAGDALIQLYTHFISDFESKINLLKFAHFAVVVSRQYSDKDAGISYLEGVISK 403 + + V GD LI H D E+K + KF D D ++ E S Sbjct: 80 PFSTSGV-IGDPLID-DLHSGQDKENKFSQPKF------------DDDITVAEAEAAASI 125 Query: 404 LHDT-----KESRIEEPVLYVKMQIASF 472 D + I+EP+ + +I +F Sbjct: 126 EQDAPAWVEQPQEIDEPLTHHPDEIDAF 153
>YPIA_BACSU (P54389) Hypothetical protein ypiA| Length = 423 Score = 29.6 bits (65), Expect = 6.9 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 11/111 (9%) Frame = +2 Query: 215 LDQFLAL--AVVQAGDALIQLYTHFISDFESKINLLKFAHFAVVVSRQYSDKDAGIS-YL 385 L + LAL V+A L+ +Y H D++ I+L++ R Y ++D + YL Sbjct: 295 LQEALALDPGFVEALHTLLAVY-HKEEDYDQIIDLIQEV-------RSYGEEDPKYNWYL 346 Query: 386 EGVISKLHDTKESRIEEPVLYVKM--------QIASFLLEKGNQKECKKLV 514 ++L +E++ Y+ + ASFLLE+G QKE L+ Sbjct: 347 ASAYTELEQYEEAKQSFEAAYLHYREDRDFLYEYASFLLEEGLQKEALPLL 397
>PUR5_PROMM (Q7V581) Phosphoribosylformylglycinamidine cyclo-ligase (EC| 6.3.3.1) (AIRS) (Phosphoribosyl-aminoimidazole synthetase) (AIR synthase) Length = 345 Score = 29.3 bits (64), Expect = 9.1 Identities = 14/43 (32%), Positives = 19/43 (44%) Frame = +2 Query: 134 TRPELAEWYAALADLYQRKLWHQLTLKLDQFLALAVVQAGDAL 262 TRPEL +W + + LWH L + L +A D L Sbjct: 271 TRPELFQWLQDAGQIPEHDLWHTFNLGVGFCLVVAEEVVSDVL 313
>EF1A_PUCGR (P32186) Elongation factor 1-alpha (EF-1-alpha)| Length = 463 Score = 29.3 bits (64), Expect = 9.1 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +2 Query: 482 KGNQKECKKLVDEGKTTLDSMDDVDPSVHST 574 KG KE K V +GKT LD++D ++P T Sbjct: 209 KGWTKETKAGVSKGKTLLDAIDAIEPPSRPT 239 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,479,790 Number of Sequences: 219361 Number of extensions: 1159779 Number of successful extensions: 4237 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4113 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4235 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
