Clone Name	bah63p02
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	777	0.0
2	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	710	0.0
3	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	640	0.0
4	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	476	e-131
5	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	270	3e-69
6	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	250	3e-63
7	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	222	7e-55
8	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	222	7e-55
9	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	222	7e-55
10	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	222	7e-55
11	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	222	7e-55
12	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	222	7e-55
13	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	222	7e-55
14	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	222	7e-55
15	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	222	7e-55
16	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	222	7e-55
17	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	172	6e-40
18	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	168	9e-39
19	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	168	9e-39
20	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	168	9e-39
21	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	168	9e-39
22	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	125	1e-25
23	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	103	4e-19
24	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	103	4e-19
25	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	103	4e-19
26	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	103	4e-19
27	gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph...	64	4e-07
28	gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA...	54	4e-04
29	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	48	0.023
30	gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ...	46	0.090
31	gb|AE015925.1| Chlamydophila caviae GPIC, complete genome	44	0.36
32	emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA	42	1.4
33	emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA	42	1.4
34	emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA	42	1.4
35	emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA	42	1.4
36	emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA	42	1.4
37	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	42	1.4
38	gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome	40	5.6
39	gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 ...	40	5.6
40	gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of t...	40	5.6
41	gb|CP000110.1| Synechococcus sp. CC9605, complete genome	40	5.6
42	ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867...	40	5.6
43	ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrot...	40	5.6
44	ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphop...	40	5.6
45	gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co...	40	5.6
46	gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome	40	5.6
47	ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-ass...	40	5.6
48	gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphopro...	40	5.6
49	ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain h...	40	5.6
50	gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite...	40	5.6
51	gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite...	40	5.6
52	ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical ...	40	5.6
53	gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphopro...	40	5.6
54	emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chr...	40	5.6
55	emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on ch...	40	5.6
56	gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and co...	40	5.6
57	gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, co...	40	5.6
58	emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta ...	40	5.6
59	dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE60023...	40	5.6
60	gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-4...	40	5.6
61	gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, com...	40	5.6
62	gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, co...	40	5.6
63	gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome...	40	5.6
64	gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds	40	5.6
65	gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana...	40	5.6
66	dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome	40	5.6
67	gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209....	40	5.6
68	gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana...	40	5.6
69	gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, comple...	40	5.6
70	gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Canc...	40	5.6
71	dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds	40	5.6
72	dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:R...	40	5.6
73	gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge...	40	5.6
74	gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila No...	40	5.6
75	emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein...	40	5.6

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  777 bits (392), Expect = 0.0
 Identities = 411/416 (98%), Gaps = 1/416 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatggctgctgcctt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  cgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatggctgctgcctt 155

                                                                       
Query: 61  ctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaagaagctcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaagaagctcaa 215

                                                                       
Query: 121 gaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaagcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcac 275

                                                                       
Query: 181 agtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 agtcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgc 335

                                                                       
Query: 241 gtacgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgct 300
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 taccgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgct 395

                                                                       
Query: 301 ctcccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtacgt 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtacgt 455

                                                                   
Query: 361 cagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcg 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcg 511

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  710 bits (358), Expect = 0.0
 Identities = 400/414 (96%)
 Strand = Plus / Plus

                                                                       
Query: 3   cgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatggctgctgccttct 62
           ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 18  cgcgcatccaccgctgctagcaaggtcgagcaagcagcacagagatggctgctgccttct 77

                                                                       
Query: 63  cctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaagaagctcaaga 122
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  cctccaccgtcggtgccccggcttctacgccgaccaacttcctcgggaagaagctcaaga 137

                                                                       
Query: 123 agcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcacag 182
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 138 agcaggtgacctcggccgtgaactaccatggcaagagctccaaggccaacaggttcacgg 197

                                                                       
Query: 183 tcatggcagcggagaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgt 242
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tcatggcagcggaaaacatcgacgagaagaggaacaccgacaagtggaagggtcttgcgt 257

                                                                       
Query: 243 acgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctct 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 258 acgatatctccgacgaccagcaggacatcaccagagggaagggcatcgtggactccctct 317

                                                                       
Query: 303 cccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtacgtca 362
            |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 318 tccaggcgcccactggcgacggcacccacgaggccgtcctcagctcatacgagtacgtca 377

                                                                 
Query: 363 gccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcg 416
           ||||||| ||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gccagggactcaagaagtacgacttcgacaacaccatgggaggcttctacatcg 431

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  640 bits (323), Expect = 0.0
 Identities = 332/335 (99%)
 Strand = Plus / Plus

                                                                        
Query: 82   ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577

                                                                        
Query: 142  gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5578 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 5637

                                                                        
Query: 202  cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 261
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5638 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 5697

                                                                        
Query: 262  gcaggacatcaccagagggaagggcatcgtggactcgctctcccaggcgcccacgggcga 321
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |
Sbjct: 5698 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggggca 5757

                                                                        
Query: 322  cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 381
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5758 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 5817

                                               
Query: 382  cgacttcgacaacaccatgggaggcttctacatcg 416
            |||||||||||||||||||||||||||||||||||
Sbjct: 5818 cgacttcgacaacaccatgggaggcttctacatcg 5852



 Score =  222 bits (112), Expect = 7e-55
 Identities = 160/176 (90%)
 Strand = Plus / Plus

                                                                        
Query: 226  gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 285
            |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998

                                                                        
Query: 286  catcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggccgtcctcag 345
            |||||||||||| || | |||||| |||| |||||||||||||||||||||| |||| ||
Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058

                                                                    
Query: 346  ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgg 401
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3059 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatgg 3114



 Score =  149 bits (75), Expect = 8e-33
 Identities = 82/83 (98%), Gaps = 1/83 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    cgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatggctgctgcctt 60
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5317 cgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatggctgctgcctt 5375

                                   
Query: 61   ctcctccaccgtcggggctccgg 83
            |||||||||||||||||||||||
Sbjct: 5376 ctcctccaccgtcggggctccgg 5398

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  476 bits (240), Expect = e-131
 Identities = 252/256 (98%)
 Strand = Plus / Plus

                                                                       
Query: 161 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 60

                                                                       
Query: 221 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 280
           ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 61  gacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagaggg 120

                                                                       
Query: 281 aagggcatcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggccgtc 340
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 180

                                                                       
Query: 341 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 240

                           
Query: 401 ggaggcttctacatcg 416
           ||||||||||||||||
Sbjct: 241 ggaggcttctacatcg 256

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  270 bits (136), Expect = 3e-69
 Identities = 181/196 (92%)
 Strand = Plus / Plus

                                                                       
Query: 221 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 280
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316

                                                                       
Query: 281 aagggcatcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggccgtc 340
           ||||| ||||| ||||| || | ||||||||||| |||||| ||||||||||||||||||
Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376

                                                                       
Query: 341 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 400
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 377 ctcagctcctacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 436

                           
Query: 401 ggaggcttctacatcg 416
           ||||||||||||||||
Sbjct: 437 ggaggcttctacatcg 452



 Score =  228 bits (115), Expect = 1e-56
 Identities = 139/147 (94%)
 Strand = Plus / Plus

                                                                       
Query: 43  agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 102
           ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct: 76  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagctt 135

                                                                       
Query: 103 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 162
           |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 136 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 195

                                      
Query: 163 caaggccaacaggttcacagtcatggc 189
           |||||||||||||||||| ||||||||
Sbjct: 196 caaggccaacaggttcaccgtcatggc 222

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  250 bits (126), Expect = 3e-63
 Identities = 178/196 (90%)
 Strand = Plus / Plus

                                                                       
Query: 221 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 280
           |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || 
Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306

                                                                       
Query: 281 aagggcatcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggccgtc 340
           ||||| ||||| |||||  | | ||||||||||| |||||| || |||||||||||||||
Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366

                                                                       
Query: 341 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 400
           |||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 367 ctcagctcntacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 426

                           
Query: 401 ggaggcttctacatcg 416
           ||||||||||||||||
Sbjct: 427 ggaggcttctacatcg 442



 Score =  222 bits (112), Expect = 7e-55
 Identities = 138/147 (93%)
 Strand = Plus / Plus

                                                                       
Query: 43  agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 102
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |||
Sbjct: 66  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagctt 125

                                                                       
Query: 103 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 162
           |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 126 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 185

                                      
Query: 163 caaggccaacaggttcacagtcatggc 189
           |||||||||||||||||| ||||||||
Sbjct: 186 caaggccaacaggttcaccgtcatggc 212

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase (rca) mRNA, complete cds
          Length = 1675

 Score =  222 bits (112), Expect = 7e-55
 Identities = 175/196 (89%)
 Strand = Plus / Plus

                                                                       
Query: 221 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 280
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271

                                                                       
Query: 281 aagggcatcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggccgtc 340
           |||||  |||| ||||| || | |||||| |||||||| || ||||||||||||||||||
Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331

                                                                       
Query: 341 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 400
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 332 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 391

                           
Query: 401 ggaggcttctacatcg 416
           ||||||||||||||||
Sbjct: 392 ggaggcttctacatcg 407



 Score =  172 bits (87), Expect = 6e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 45  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 104
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 33  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 92

                                                                       
Query: 105 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 164
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 93  tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 152

                          
Query: 165 aggccaacaggttca 179
           |   |||||||||||
Sbjct: 153 acatcaacaggttca 167

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for
           ribulose-bisphosphate carboxylase activase large isoform
           precursor protein, complete cds, clone: 13YPR038
          Length = 1558

 Score =  222 bits (112), Expect = 7e-55
 Identities = 175/196 (89%)
 Strand = Plus / Plus

                                                                       
Query: 221 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 280
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263

                                                                       
Query: 281 aagggcatcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggccgtc 340
           |||||  |||| ||||| || | |||||| |||||||| || ||||||||||||||||||
Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323

                                                                       
Query: 341 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 400
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 324 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 383

                           
Query: 401 ggaggcttctacatcg 416
           ||||||||||||||||
Sbjct: 384 ggaggcttctacatcg 399



 Score =  172 bits (87), Expect = 6e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 45  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 104
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 25  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 84

                                                                       
Query: 105 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 164
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 85  tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 144

                          
Query: 165 aggccaacaggttca 179
           |   |||||||||||
Sbjct: 145 acatcaacaggttca 159

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B
           (RcaB) mRNA, complete cds; nuclear gene for chloroplast
           product
          Length = 1525

 Score =  222 bits (112), Expect = 7e-55
 Identities = 160/176 (90%)
 Strand = Plus / Plus

                                                                       
Query: 226 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 285
           |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| ||
Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276

                                                                       
Query: 286 catcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggccgtcctcag 345
           |||||||||||| || | |||||| |||| |||||||||||||||||||||| |||| ||
Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336

                                                                   
Query: 346 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgg 401
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 337 ctcctacgagtacatcagccagggcctgcgcaagtacgacttcgacaacaccatgg 392



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 72/83 (86%)
 Strand = Plus / Plus

                                                                       
Query: 46  gatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcct 105
           ||||||| |||| ||||| |||||||| || |||||||| || || ||||||| ||||||
Sbjct: 25  gatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcct 84

                                  
Query: 106 cgggaagaagctcaagaagcagg 128
           |||||||||| | ||||||||||
Sbjct: 85  cgggaagaaggtgaagaagcagg 107

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
           insert sequence
          Length = 1721

 Score =  222 bits (112), Expect = 7e-55
 Identities = 175/196 (89%)
 Strand = Plus / Plus

                                                                       
Query: 221 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 280
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311

                                                                       
Query: 281 aagggcatcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggccgtc 340
           |||||  |||| ||||| || | |||||| |||||||| || ||||||||||||||||||
Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371

                                                                       
Query: 341 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 400
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 372 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 431

                           
Query: 401 ggaggcttctacatcg 416
           ||||||||||||||||
Sbjct: 432 ggaggcttctacatcg 447



 Score =  172 bits (87), Expect = 6e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 45  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 104
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 73  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 132

                                                                       
Query: 105 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 164
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 133 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 192

                          
Query: 165 aggccaacaggttca 179
           |   |||||||||||
Sbjct: 193 acatcaacaggttca 207

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
           insert sequence
          Length = 1680

 Score =  222 bits (112), Expect = 7e-55
 Identities = 175/196 (89%)
 Strand = Plus / Plus

                                                                       
Query: 221 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 280
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300

                                                                       
Query: 281 aagggcatcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggccgtc 340
           |||||  |||| ||||| || | |||||| |||||||| || ||||||||||||||||||
Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360

                                                                       
Query: 341 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 400
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 361 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 420

                           
Query: 401 ggaggcttctacatcg 416
           ||||||||||||||||
Sbjct: 421 ggaggcttctacatcg 436



 Score =  172 bits (87), Expect = 6e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 45  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 104
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 62  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 121

                                                                       
Query: 105 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 164
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 122 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 181

                          
Query: 165 aggccaacaggttca 179
           |   |||||||||||
Sbjct: 182 acatcaacaggttca 196

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
           insert sequence
          Length = 1691

 Score =  222 bits (112), Expect = 7e-55
 Identities = 175/196 (89%)
 Strand = Plus / Plus

                                                                       
Query: 221 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 280
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                                                                       
Query: 281 aagggcatcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggccgtc 340
           |||||  |||| ||||| || | |||||| |||||||| || ||||||||||||||||||
Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359

                                                                       
Query: 341 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 400
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 360 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 419

                           
Query: 401 ggaggcttctacatcg 416
           ||||||||||||||||
Sbjct: 420 ggaggcttctacatcg 435



 Score =  172 bits (87), Expect = 6e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 45  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 104
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                                                                       
Query: 105 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 164
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180

                          
Query: 165 aggccaacaggttca 179
           |   |||||||||||
Sbjct: 181 acatcaacaggttca 195

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
           insert sequence
          Length = 1470

 Score =  222 bits (112), Expect = 7e-55
 Identities = 175/196 (89%)
 Strand = Plus / Plus

                                                                       
Query: 221 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 280
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 24  gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83

                                                                       
Query: 281 aagggcatcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggccgtc 340
           |||||  |||| ||||| || | |||||| |||||||| || ||||||||||||||||||
Sbjct: 84  aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143

                                                                       
Query: 341 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 400
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 144 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 203

                           
Query: 401 ggaggcttctacatcg 416
           ||||||||||||||||
Sbjct: 204 ggaggcttctacatcg 219

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score =  222 bits (112), Expect = 7e-55
 Identities = 160/176 (90%)
 Strand = Plus / Plus

                                                                       
Query: 226 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 285
           |||||||||||| || ||||| ||||| ||||||||||||||||||||  | ||||| ||
Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429

                                                                       
Query: 286 catcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggccgtcctcag 345
           |||||||||||| || | |||||| |||| |||||||||||||||||||||| |||| ||
Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489

                                                                   
Query: 346 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgg 401
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatgg 545

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
           precursor, complete cds
          Length = 1706

 Score =  222 bits (112), Expect = 7e-55
 Identities = 175/196 (89%)
 Strand = Plus / Plus

                                                                       
Query: 221 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 280
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304

                                                                       
Query: 281 aagggcatcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggccgtc 340
           |||||  |||| ||||| || | |||||| |||||||| || ||||||||||||||||||
Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364

                                                                       
Query: 341 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 400
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 365 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 424

                           
Query: 401 ggaggcttctacatcg 416
           ||||||||||||||||
Sbjct: 425 ggaggcttctacatcg 440



 Score =  165 bits (83), Expect = 1e-37
 Identities = 122/135 (90%)
 Strand = Plus / Plus

                                                                       
Query: 45  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 104
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 66  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 125

                                                                       
Query: 105 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 164
           | ||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 126 tggggaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaagagctcca 185

                          
Query: 165 aggccaacaggttca 179
           |   |||||||||||
Sbjct: 186 acatcaacaggttca 200

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
           precursor, complete cds
          Length = 1623

 Score =  222 bits (112), Expect = 7e-55
 Identities = 175/196 (89%)
 Strand = Plus / Plus

                                                                       
Query: 221 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 280
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298

                                                                       
Query: 281 aagggcatcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggccgtc 340
           |||||  |||| ||||| || | |||||| |||||||| || ||||||||||||||||||
Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358

                                                                       
Query: 341 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 400
           |||||||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||
Sbjct: 359 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 418

                           
Query: 401 ggaggcttctacatcg 416
           ||||||||||||||||
Sbjct: 419 ggaggcttctacatcg 434



 Score =  172 bits (87), Expect = 6e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 45  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 104
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 60  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 119

                                                                       
Query: 105 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 164
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 120 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 179

                          
Query: 165 aggccaacaggttca 179
           |   |||||||||||
Sbjct: 180 acatcaacaggttca 194

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
           insert sequence
          Length = 1682

 Score =  172 bits (87), Expect = 6e-40
 Identities = 123/135 (91%)
 Strand = Plus / Plus

                                                                       
Query: 45  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 104
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                                                                       
Query: 105 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 164
           | ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180

                          
Query: 165 aggccaacaggttca 179
           |   |||||||||||
Sbjct: 181 acatcaacaggttca 195



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                       
Query: 345 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 404
           |||||||||||||| |||||||||| ||  | | ||||||||||||||||||||||||||
Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386

                       
Query: 405 gcttctacatcg 416
           ||||||||||||
Sbjct: 387 gcttctacatcg 398



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                       
Query: 221 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 280
           |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299

                
Query: 281 aaggg 285
           |||||
Sbjct: 300 aaggg 304

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  168 bits (85), Expect = 9e-39
 Identities = 133/149 (89%)
 Strand = Plus / Minus

                                                                          
Query: 221    gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 280
              |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647

                                                                          
Query: 281    aagggcatcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggccgtc 340
              |||||  |||| ||||| || | |||||| |||||||| || ||||||||||||||||||
Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587

                                           
Query: 341    ctcagctcctacgagtacgtcagccaggg 369
              |||||||||||||||||| ||||||||||
Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558



 Score =  119 bits (60), Expect = 8e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                          
Query: 92     ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 151
              |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779

                                          
Query: 152    ggcaagagctccaaggccaacaggttca 179
              ||||||||||||||   |||||||||||
Sbjct: 109778 ggcaagagctccaacatcaacaggttca 109751



 Score =  117 bits (59), Expect = 3e-23
 Identities = 98/111 (88%)
 Strand = Plus / Minus

                                                                          
Query: 226    gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 285
              ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146

                                                                 
Query: 286    catcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggc 336
              | |||| ||||| || | |||||| |||| ||| || ||||||||||||||
Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 38/38 (100%)
 Strand = Plus / Minus

                                                    
Query: 379    gtacgacttcgacaacaccatgggaggcttctacatcg 416
              ||||||||||||||||||||||||||||||||||||||
Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcg 109398



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                     
Query: 45     agatggctgctgccttctcctccaccgtcggggctccgg 83
              |||||||||||||||||||||||||||| || |||||||
Sbjct: 109984 agatggctgctgccttctcctccaccgttggagctccgg 109946

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  168 bits (85), Expect = 9e-39
 Identities = 133/149 (89%)
 Strand = Plus / Minus

                                                                         
Query: 221   gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 280
             |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524

                                                                         
Query: 281   aagggcatcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggccgtc 340
             |||||  |||| ||||| || | |||||| |||||||| || ||||||||||||||||||
Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464

                                          
Query: 341   ctcagctcctacgagtacgtcagccaggg 369
             |||||||||||||||||| ||||||||||
Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435



 Score =  119 bits (60), Expect = 8e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                         
Query: 92    ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 151
             |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656

                                         
Query: 152   ggcaagagctccaaggccaacaggttca 179
             ||||||||||||||   |||||||||||
Sbjct: 31655 ggcaagagctccaacatcaacaggttca 31628



 Score =  117 bits (59), Expect = 3e-23
 Identities = 98/111 (88%)
 Strand = Plus / Minus

                                                                         
Query: 226   gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 285
             ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023

                                                                
Query: 286   catcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggc 336
             | |||| ||||| || | |||||| |||| ||| || ||||||||||||||
Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 38/38 (100%)
 Strand = Plus / Minus

                                                   
Query: 379   gtacgacttcgacaacaccatgggaggcttctacatcg 416
             ||||||||||||||||||||||||||||||||||||||
Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcg 31275



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 45    agatggctgctgccttctcctccaccgtcggggctccgg 83
             |||||||||||||||||||||||||||| || |||||||
Sbjct: 31861 agatggctgctgccttctcctccaccgttggagctccgg 31823

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  168 bits (85), Expect = 9e-39
 Identities = 133/149 (89%)
 Strand = Plus / Minus

                                                                            
Query: 221      gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 280
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786

                                                                            
Query: 281      aagggcatcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggccgtc 340
                |||||  |||| ||||| || | |||||| |||||||| || ||||||||||||||||||
Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726

                                             
Query: 341      ctcagctcctacgagtacgtcagccaggg 369
                |||||||||||||||||| ||||||||||
Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697



 Score =  119 bits (60), Expect = 8e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 92       ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 151
                |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918

                                            
Query: 152      ggcaagagctccaaggccaacaggttca 179
                ||||||||||||||   |||||||||||
Sbjct: 28304917 ggcaagagctccaacatcaacaggttca 28304890



 Score =  117 bits (59), Expect = 3e-23
 Identities = 98/111 (88%)
 Strand = Plus / Minus

                                                                            
Query: 226      gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 285
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285

                                                                   
Query: 286      catcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggc 336
                | |||| ||||| || | |||||| |||| ||| || ||||||||||||||
Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 38/38 (100%)
 Strand = Plus / Minus

                                                      
Query: 379      gtacgacttcgacaacaccatgggaggcttctacatcg 416
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcg 28304537



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 45       agatggctgctgccttctcctccaccgtcggggctccgg 83
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28305123 agatggctgctgccttctcctccaccgttggagctccgg 28305085

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  168 bits (85), Expect = 9e-39
 Identities = 133/149 (89%)
 Strand = Plus / Minus

                                                                            
Query: 221      gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 280
                |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| |||
Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235

                                                                            
Query: 281      aagggcatcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggccgtc 340
                |||||  |||| ||||| || | |||||| |||||||| || ||||||||||||||||||
Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175

                                             
Query: 341      ctcagctcctacgagtacgtcagccaggg 369
                |||||||||||||||||| ||||||||||
Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146



 Score =  119 bits (60), Expect = 8e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 92       ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 151
                |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367

                                            
Query: 152      ggcaagagctccaaggccaacaggttca 179
                ||||||||||||||   |||||||||||
Sbjct: 28287366 ggcaagagctccaacatcaacaggttca 28287339



 Score =  117 bits (59), Expect = 3e-23
 Identities = 98/111 (88%)
 Strand = Plus / Minus

                                                                            
Query: 226      gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 285
                ||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734

                                                                   
Query: 286      catcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggc 336
                | |||| ||||| || | |||||| |||| ||| || ||||||||||||||
Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 38/38 (100%)
 Strand = Plus / Minus

                                                      
Query: 379      gtacgacttcgacaacaccatgggaggcttctacatcg 416
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcg 28286986



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 45       agatggctgctgccttctcctccaccgtcggggctccgg 83
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28287572 agatggctgctgccttctcctccaccgttggagctccgg 28287534

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
           precursor (rca1) mRNA, complete cds
          Length = 1424

 Score =  125 bits (63), Expect = 1e-25
 Identities = 129/151 (85%)
 Strand = Plus / Plus

                                                                       
Query: 221 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 280
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                                                                       
Query: 281 aagggcatcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggccgtc 340
           |||||| |||| |||   |||| ||||||||| | ||| |||||||||||||  ||||| 
Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332

                                          
Query: 341 ctcagctcctacgagtacgtcagccagggcc 371
           |||||||||||||| ||| ||||||||||||
Sbjct: 333 ctcagctcctacgactacatcagccagggcc 363



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 107/127 (84%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 47  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 100
           ||||| || |||||||||||||||||||| |||||||| || || |||||||       |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                                                                       
Query: 101 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 157
           |||||||||||||||||||| ||||   ||||| || ||||||||| |||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140

                  
Query: 158 agctcca 164
           |||||||
Sbjct: 141 agctcca 147

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score =  103 bits (52), Expect = 4e-19
 Identities = 94/108 (87%)
 Strand = Plus / Plus

                                                                       
Query: 257 gaccagcaggacatcaccagagggaagggcatcgtggactcgctctcccaggcgcccacg 316
           |||||||||||||||||||| ||||||||||| || ||||| || | |||||| |||| |
Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294

                                                           
Query: 317 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagc 364
           |||||||| |||||| |  ||||||| ||||||||||||||| |||||
Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 342

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score =  103 bits (52), Expect = 4e-19
 Identities = 94/108 (87%)
 Strand = Plus / Plus

                                                                       
Query: 257 gaccagcaggacatcaccagagggaagggcatcgtggactcgctctcccaggcgcccacg 316
           |||||||||||||||||||| ||||||||||| || ||||| || | |||||| |||| |
Sbjct: 98  gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157

                                                           
Query: 317 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagc 364
           |||||||| |||||| |  ||||||| ||||||||||||||| |||||
Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 205

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score =  103 bits (52), Expect = 4e-19
 Identities = 94/108 (87%)
 Strand = Plus / Plus

                                                                       
Query: 257 gaccagcaggacatcaccagagggaagggcatcgtggactcgctctcccaggcgcccacg 316
           |||||||||||||||||||| ||||||||||| || ||||| || | |||||| |||| |
Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187

                                                           
Query: 317 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagc 364
           |||||||| |||||| |  ||||||| ||||||||||||||| |||||
Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagc 235

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score =  103 bits (52), Expect = 4e-19
 Identities = 125/151 (82%)
 Strand = Plus / Plus

                                                                       
Query: 221 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 280
           |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || 
Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272

                                                                       
Query: 281 aagggcatcgtggactcgctctcccaggcgcccacgggcgacggcacccacgaggccgtc 340
           |||||| |||| |||   |||| ||||||||| |      ||||||||||||  ||||| 
Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332

                                          
Query: 341 ctcagctcctacgagtacgtcagccagggcc 371
           |||||||||||||| ||| ||||||||||||
Sbjct: 333 ctcagctcctacgactacatcagccagggcc 363



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 107/127 (84%), Gaps = 9/127 (7%)
 Strand = Plus / Plus

                                                                       
Query: 47  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 100
           ||||| || |||||||||||||||||||| |||||||| || || |||||||       |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                                                                       
Query: 101 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 157
           |||||||||||||||||||| ||||   ||||| || ||||||||| |||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140

                  
Query: 158 agctcca 164
           |||||||
Sbjct: 141 agctcca 147

---

>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 1 mRNA, complete cds
          Length = 1559

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Plus

                                                                   
Query: 227 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaa 282
           |||||||||||||| || ||||||||||| ||||| || ||||| |||||||||||
Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaa 335

---

>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear
           gene for chloroplast product
          Length = 1671

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 227 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 285
           ||||||||||| || ||||||||||| || ||||| || |||||||| || ||||||||
Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase mRNA
          Length = 1853

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                       
Query: 250 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctctcccaggc 309
           |||||||||||| || |||||||| ||||| ||||| |  |||||||| |||| ||||||
Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378

---

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 252     ccgacgaccagcaggacatcacc 274
               |||||||||||||||||||||||
Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066

---

>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 109    gaagaagctcaagaagcaggtg 130
              ||||||||||||||||||||||
Sbjct: 632957 gaagaagctcaagaagcaggtg 632978

---

>emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA
          Length = 929

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 37  cagcacagagatggctgctgc 57
           |||||||||||||||||||||
Sbjct: 531 cagcacagagatggctgctgc 511

---

>emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA
          Length = 939

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 37  cagcacagagatggctgctgc 57
           |||||||||||||||||||||
Sbjct: 541 cagcacagagatggctgctgc 521

---

>emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA
          Length = 992

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 37  cagcacagagatggctgctgc 57
           |||||||||||||||||||||
Sbjct: 595 cagcacagagatggctgctgc 575

---

>emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA
          Length = 1318

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 37  cagcacagagatggctgctgc 57
           |||||||||||||||||||||
Sbjct: 932 cagcacagagatggctgctgc 912

---

>emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA
          Length = 1006

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 37  cagcacagagatggctgctgc 57
           |||||||||||||||||||||
Sbjct: 609 cagcacagagatggctgctgc 589

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 336 ccgtcctcagctcctacgagtacgtcagc 364
           ||||||| ||||||||||||||| |||||
Sbjct: 13  ccgtcctgagctcctacgagtacatcagc 41

---

>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 184     catggcagcggagaacatcg 203
               ||||||||||||||||||||
Sbjct: 1379894 catggcagcggagaacatcg 1379875

---

>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 48  tggctgctgccttctcctcc 67
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome
          Length = 10732

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 248  atctccgacgaccagcaggacatc 271
            |||||| |||||||||||||||||
Sbjct: 8676 atctcccacgaccagcaggacatc 8653

---

>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 188    gcagcggagaacatcgacga 207
              ||||||||||||||||||||
Sbjct: 173412 gcagcggagaacatcgacga 173393

---

>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA
          Length = 1685

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 311  cccacgggcgacggcacccacgag 334
            ||||||||||||| ||||||||||
Sbjct: 1369 cccacgggcgacgtcacccacgag 1392

---

>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor;
            testicular feminization; spinal and bulbar muscular
            atrophy; Kennedy disease) (AR), mRNA
          Length = 3577

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 153  gcaagagctccaaggccaac 172
            ||||||||||||||||||||
Sbjct: 3271 gcaagagctccaaggccaac 3290

---

>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1),
           mRNA
          Length = 2502

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 48  tggctgctgccttctcctcc 67
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747

---

>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     ctgccttctcctccaccgtc 73
              ||||||||||||||||||||
Sbjct: 240861 ctgccttctcctccaccgtc 240842

---

>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 184     catggcagcggagaacatcg 203
               ||||||||||||||||||||
Sbjct: 1380755 catggcagcggagaacatcg 1380736

---

>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila)
           (NOTCH1), mRNA
          Length = 9312

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 311 cccacgggcgacggcacccacgag 334
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:1494 IMAGE:3533568), complete cds
          Length = 2464

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 48  tggctgctgccttctcctcc 67
           ||||||||||||||||||||
Sbjct: 722 tggctgctgccttctcctcc 703

---

>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding
            protein 4 (LOC506402), mRNA
          Length = 7219

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 51   ctgctgccttctcctccacc 70
            ||||||||||||||||||||
Sbjct: 5008 ctgctgccttctcctccacc 4989

---

>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence
          Length = 457

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 51 ctgctgccttctcctccacc 70
          ||||||||||||||||||||
Sbjct: 65 ctgctgccttctcctccacc 46

---

>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence
          Length = 470

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 51 ctgctgccttctcctccacc 70
          ||||||||||||||||||||
Sbjct: 65 ctgctgccttctcctccacc 46

---

>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1)
            partial mRNA
          Length = 22443

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 109  gaagaagctcaagaagcagg 128
            ||||||||||||||||||||
Sbjct: 8385 gaagaagctcaagaagcagg 8404

---

>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:5049 IMAGE:2900024), complete cds
          Length = 3237

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 48  tggctgctgccttctcctcc 67
           ||||||||||||||||||||
Sbjct: 232 tggctgctgccttctcctcc 213

---

>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3'
              end of the gene for activator of G-protein signalling 3
              (AGS3), two novel genes, the CARD9 gene for caspase
              recruitment domain family member 9, the SNAPC4 gene for a
              190kDa small nuclear RNA activating complex polypeptide 4, 
              the SDCCAG3 gene for serologically defined colon cancer
              antigen 3, the INPP5E gene for a 72kDa inositol
              polyphosphate-5-phosphatase, the gene for
              phosphatidylinositol polyphosphate 5-phosphatase type IV
              (PPI5PIV), a novel gene (KIAA0310), the 3' end of the
              NOTCH1 gene for Notch homolog 1 translocation-associated
              (Drosophila) and twenty CpG islands, complete sequence
          Length = 188462

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 311    cccacgggcgacggcacccacgag 334
              ||||||||||||| ||||||||||
Sbjct: 166513 cccacgggcgacgtcacccacgag 166490

---

>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the
              gene for  Hermansky-Pudlak syndrome-6 protein (HPS6), two
              pseudogenes for  transcription elongation factor B (SIII),
              polypeptide 1, the LDB1 gene for LIM domain binding 1, a
              novel gene (KIAA0595), the NOLC1 gene for nucleolar and
              coiled-body phosphoprotein 1 and five CpG islands, complete
              sequence
          Length = 158434

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     tggctgctgccttctcctcc 67
              ||||||||||||||||||||
Sbjct: 101054 tggctgctgccttctcctcc 101035

---

>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body
           phosphoprotein 1 mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 48  tggctgctgccttctcctcc 67
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence
          Length = 147210

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   ccagagggaagggcatcgtg 292
             ||||||||||||||||||||
Sbjct: 35948 ccagagggaagggcatcgtg 35967

---

>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1812

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 48  tggctgctgccttctcctcc 67
           ||||||||||||||||||||
Sbjct: 717 tggctgctgccttctcctcc 698

---

>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar
           to H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2288

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 48  tggctgctgccttctcctcc 67
           ||||||||||||||||||||
Sbjct: 570 tggctgctgccttctcctcc 551

---

>gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-470F15, complete sequence
          Length = 177104

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     acagagatggctgctgcctt 60
              ||||||||||||||||||||
Sbjct: 121162 acagagatggctgctgcctt 121143

---

>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds
          Length = 3577

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 153  gcaagagctccaaggccaac 172
            ||||||||||||||||||||
Sbjct: 3271 gcaagagctccaaggccaac 3290

---

>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence
          Length = 81641

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   ccagagggaagggcatcgtg 292
             ||||||||||||||||||||
Sbjct: 47211 ccagagggaagggcatcgtg 47230

---

>gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome 16, complete sequence
          Length = 180261

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                      
Query: 24     aaggtcgaccaagcagcacagagatggctgctgccttctc 63
              |||||| |||||  ||||||| || |||||||||||||||
Sbjct: 111680 aaggtccaccaatgagcacagtgagggctgctgccttctc 111719

---

>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds
          Length = 7693

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 311 cccacgggcgacggcacccacgag 334
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome
             V, complete sequence
          Length = 130299

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 163   caaggccaacaggttcacagtcat 186
             ||||||||||||||||| ||||||
Sbjct: 13824 caaggccaacaggttcagagtcat 13847

---

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 244     cgatatctccgacgaccagc 263
               ||||||||||||||||||||
Sbjct: 4182002 cgatatctccgacgaccagc 4181983

---

>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and
           coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 48  tggctgctgccttctcctcc 67
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696

---

>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V,
             complete sequence
          Length = 105589

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 163   caaggccaacaggttcacagtcat 186
             ||||||||||||||||| ||||||
Sbjct: 27506 caaggccaacaggttcagagtcat 27483

---

>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence
          Length = 187148

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   aagaagctcaagaagcaggt 129
             ||||||||||||||||||||
Sbjct: 44669 aagaagctcaagaagcaggt 44650

---

>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 209755

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    tggctgctgccttctcctcc 67
             ||||||||||||||||||||
Sbjct: 46900 tggctgctgccttctcctcc 46919

---

>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds
          Length = 3727

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 48  tggctgctgccttctcctcc 67
           ||||||||||||||||||||
Sbjct: 708 tggctgctgccttctcctcc 689

---

>dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-56O15, complete
              sequences
          Length = 162128

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 24     aaggtcgaccaagcagcacagagatggctgctgccttctc 63
              |||||| |||||  ||||||| || |||||||||||||||
Sbjct: 108212 aaggtccaccaatgagcacagtgagggctgctgccttctc 108173

---

>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 44     gagatggctgctgccttctcctcc 67
              ||||||||||||||||||| ||||
Sbjct: 472845 gagatggctgctgccttctgctcc 472822

---

>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end
          Length = 7332

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 311 cccacgggcgacggcacccacgag 334
           ||||||||||||| ||||||||||
Sbjct: 703 cccacgggcgacgtcacccacgag 726

---

>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2502

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 48  tggctgctgccttctcctcc 67
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,079,291
Number of Sequences: 3902068
Number of extensions: 3079291
Number of successful extensions: 58925
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58614
Number of HSP's gapped (non-prelim): 306
length of query: 416
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 394
effective length of database: 17,147,199,772
effective search space: 6755996710168
effective search space used: 6755996710168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---