ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63o22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_471697.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 933 Score = 285 bits (144), Expect = 7e-74 Identities = 239/269 (88%), Gaps = 5/269 (1%) Strand = Plus / Plus Query: 255 gaagaaggtgaagcgcgctctgtcggtctcgtccatgaacgacgccctgctcgccgcggc 314 ||||||||||||||| || ||||| || |||||||| | ||||||||||||||||||||| Sbjct: 573 gaagaaggtgaagcgggcgctgtccgtgtcgtccatcagcgacgccctgctcgccgcggc 632 Query: 315 ggcagttgcct-cgccgcccgtggaggtcctggagctgcgcgtgtcggaggtgagcgaga 373 ||| ||| ||||||| |||||| ||| |||||||||||||||||||||| |||| | Sbjct: 633 ggc----gccggcgccgccggtggagatccaggagctgcgcgtgtcggaggtgggcgaca 688 Query: 374 aggtgctggtggtgagcgtgacgtgcagcaagcagcgcgacgccatgaccaaggtgtgcc 433 |||||||||||||||||||||||||||||||| |||||||||||| || |||||||| Sbjct: 689 gggtgctggtggtgagcgtgacgtgcagcaagcgccgcgacgccatggcccgggtgtgcc 748 Query: 434 gcgtgctcgaggagctccgcctcagggtcatcaccgccaacatcacttccgtctccggct 493 ||| |||||||||||||||||| | |||||||||||||||||||| |||||| |||||| Sbjct: 749 gcgccctcgaggagctccgcctccgcgtcatcaccgccaacatcacctccgtcgccggct 808 Query: 494 gcctaatgcacaccctcttcgtcgaggta 522 |||| |||||||||||||||||||||||| Sbjct: 809 gcctcatgcacaccctcttcgtcgaggta 837 Score = 238 bits (120), Expect = 1e-59 Identities = 174/192 (90%) Strand = Plus / Plus Query: 1 aacaagaacatcctgatggaacgcgaccgccgccgcaagctcaatgagaagctctacacg 60 |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| || Sbjct: 274 aacaagaacatcctcatggagcgcgaccgccgccgcaagctcaacgagaagctctacgcg 333 Query: 61 ctccgcagcgtcgtgcccaacatcaccaagatggacaaggcctcgatcatcaaggacgcc 120 |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 334 ctccgcagtgtcgtgcccaacatcaccaagatggacaaggcgtcgatcatcaaggacgcg 393 Query: 121 atcgagtacatccaacatctgcaggcggaggagcggcagatggaggcggaggtgtccgcg 180 |||||||||||||| | |||||||||||||||| ||||||| |||||| ||||| Sbjct: 394 atcgagtacatccagcgcctgcaggcggaggagcagcagatgctccgggaggtcgccgcg 453 Query: 181 ctcgagtccgcc 192 |||||||||||| Sbjct: 454 ctcgagtccgcc 465
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 285 bits (144), Expect = 7e-74 Identities = 239/269 (88%), Gaps = 5/269 (1%) Strand = Plus / Minus Query: 255 gaagaaggtgaagcgcgctctgtcggtctcgtccatgaacgacgccctgctcgccgcggc 314 ||||||||||||||| || ||||| || |||||||| | ||||||||||||||||||||| Sbjct: 13519106 gaagaaggtgaagcgggcgctgtccgtgtcgtccatcagcgacgccctgctcgccgcggc 13519047 Query: 315 ggcagttgcct-cgccgcccgtggaggtcctggagctgcgcgtgtcggaggtgagcgaga 373 ||| ||| ||||||| |||||| ||| |||||||||||||||||||||| |||| | Sbjct: 13519046 ggc----gccggcgccgccggtggagatccaggagctgcgcgtgtcggaggtgggcgaca 13518991 Query: 374 aggtgctggtggtgagcgtgacgtgcagcaagcagcgcgacgccatgaccaaggtgtgcc 433 |||||||||||||||||||||||||||||||| |||||||||||| || |||||||| Sbjct: 13518990 gggtgctggtggtgagcgtgacgtgcagcaagcgccgcgacgccatggcccgggtgtgcc 13518931 Query: 434 gcgtgctcgaggagctccgcctcagggtcatcaccgccaacatcacttccgtctccggct 493 ||| |||||||||||||||||| | |||||||||||||||||||| |||||| |||||| Sbjct: 13518930 gcgccctcgaggagctccgcctccgcgtcatcaccgccaacatcacctccgtcgccggct 13518871 Query: 494 gcctaatgcacaccctcttcgtcgaggta 522 |||| |||||||||||||||||||||||| Sbjct: 13518870 gcctcatgcacaccctcttcgtcgaggta 13518842 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 1 aacaagaacatcctgatggaacgcgaccgccgccgcaagctcaatgagaagctctacacg 60 |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| || Sbjct: 13519489 aacaagaacatcctcatggagcgcgaccgccgccgcaagctcaacgagaagctctacgcg 13519430 Query: 61 ctccgcagcgtcgtgcccaacatcaccaag 90 |||||||| ||||||||||||||||||||| Sbjct: 13519429 ctccgcagtgtcgtgcccaacatcaccaag 13519400 Score = 103 bits (52), Expect = 6e-19 Identities = 91/104 (87%) Strand = Plus / Minus Query: 89 agatggacaaggcctcgatcatcaaggacgccatcgagtacatccaacatctgcaggcgg 148 ||||||||||||| ||||||||||||||||| |||||||||||||| | |||||||||| Sbjct: 13519317 agatggacaaggcgtcgatcatcaaggacgcgatcgagtacatccagcgcctgcaggcgg 13519258 Query: 149 aggagcggcagatggaggcggaggtgtccgcgctcgagtccgcc 192 |||||| ||||||| |||||| ||||||||||||||||| Sbjct: 13519257 aggagcagcagatgctccgggaggtcgccgcgctcgagtccgcc 13519214 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 89 agatggacaaggcctcgatcatcaaggacgccatcgagtacatccaacatctgcaggcgg 148 ||||||||||||| |||||| | | ||||||||||| | ||||| | | ||||||| || Sbjct: 13452092 agatggacaaggcgtcgatcgtgagggacgccatcgcgcacatcgagaagctgcaggagg 13452033 Query: 149 aggagcggca 158 |||||||||| Sbjct: 13452032 aggagcggca 13452023
>emb|AL662999.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0018A10, complete sequence Length = 133238 Score = 285 bits (144), Expect = 7e-74 Identities = 239/269 (88%), Gaps = 5/269 (1%) Strand = Plus / Minus Query: 255 gaagaaggtgaagcgcgctctgtcggtctcgtccatgaacgacgccctgctcgccgcggc 314 ||||||||||||||| || ||||| || |||||||| | ||||||||||||||||||||| Sbjct: 46900 gaagaaggtgaagcgggcgctgtccgtgtcgtccatcagcgacgccctgctcgccgcggc 46841 Query: 315 ggcagttgcct-cgccgcccgtggaggtcctggagctgcgcgtgtcggaggtgagcgaga 373 ||| ||| ||||||| |||||| ||| |||||||||||||||||||||| |||| | Sbjct: 46840 ggc----gccggcgccgccggtggagatccaggagctgcgcgtgtcggaggtgggcgaca 46785 Query: 374 aggtgctggtggtgagcgtgacgtgcagcaagcagcgcgacgccatgaccaaggtgtgcc 433 |||||||||||||||||||||||||||||||| |||||||||||| || |||||||| Sbjct: 46784 gggtgctggtggtgagcgtgacgtgcagcaagcgccgcgacgccatggcccgggtgtgcc 46725 Query: 434 gcgtgctcgaggagctccgcctcagggtcatcaccgccaacatcacttccgtctccggct 493 ||| |||||||||||||||||| | |||||||||||||||||||| |||||| |||||| Sbjct: 46724 gcgccctcgaggagctccgcctccgcgtcatcaccgccaacatcacctccgtcgccggct 46665 Query: 494 gcctaatgcacaccctcttcgtcgaggta 522 |||| |||||||||||||||||||||||| Sbjct: 46664 gcctcatgcacaccctcttcgtcgaggta 46636 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 1 aacaagaacatcctgatggaacgcgaccgccgccgcaagctcaatgagaagctctacacg 60 |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| || Sbjct: 47283 aacaagaacatcctcatggagcgcgaccgccgccgcaagctcaacgagaagctctacgcg 47224 Query: 61 ctccgcagcgtcgtgcccaacatcaccaag 90 |||||||| ||||||||||||||||||||| Sbjct: 47223 ctccgcagtgtcgtgcccaacatcaccaag 47194 Score = 103 bits (52), Expect = 6e-19 Identities = 91/104 (87%) Strand = Plus / Minus Query: 89 agatggacaaggcctcgatcatcaaggacgccatcgagtacatccaacatctgcaggcgg 148 ||||||||||||| ||||||||||||||||| |||||||||||||| | |||||||||| Sbjct: 47111 agatggacaaggcgtcgatcatcaaggacgcgatcgagtacatccagcgcctgcaggcgg 47052 Query: 149 aggagcggcagatggaggcggaggtgtccgcgctcgagtccgcc 192 |||||| ||||||| |||||| ||||||||||||||||| Sbjct: 47051 aggagcagcagatgctccgggaggtcgccgcgctcgagtccgcc 47008
>dbj|AB040744.1| Oryza sativa RERJ1 mRNA for Transcription Factor, complete cds Length = 1353 Score = 278 bits (140), Expect = 2e-71 Identities = 238/269 (88%), Gaps = 5/269 (1%) Strand = Plus / Plus Query: 255 gaagaaggtgaagcgcgctctgtcggtctcgtccatgaacgacgccctgctcgccgcggc 314 ||||||||||||||| || ||||| || |||||||| | ||||||||||||||||||||| Sbjct: 638 gaagaaggtgaagcgggcgctgtccgtgtcgtccatcagcgacgccctgctcgccgcggc 697 Query: 315 ggcagttgcct-cgccgcccgtggaggtcctggagctgcgcgtgtcggaggtgagcgaga 373 ||| ||| ||||||| |||||| ||| |||||||||||||||||||||| |||| | Sbjct: 698 ggc----gccggcgccgccggtggagatccaggagctgcgcgtgtcggaggtgggcgaca 753 Query: 374 aggtgctggtggtgagcgtgacgtgcagcaagcagcgcgacgccatgaccaaggtgtgcc 433 |||||||||||||||||||||||||||||||| |||||||||||| || |||||||| Sbjct: 754 gggtgctggtggtgagcgtgacgtgcagcaagcgccgcgacgccatggcccgggtgtgcc 813 Query: 434 gcgtgctcgaggagctccgcctcagggtcatcaccgccaacatcacttccgtctccggct 493 ||| |||||||||||||||||| | |||||||||||||||||||| |||||| |||||| Sbjct: 814 gcgccctcgaggagctccgcctccgcgtcatcaccgccaacatcacctccgtcgccggct 873 Query: 494 gcctaatgcacaccctcttcgtcgaggta 522 ||| |||||||||||||||||||||||| Sbjct: 874 gccccatgcacaccctcttcgtcgaggta 902 Score = 238 bits (120), Expect = 1e-59 Identities = 174/192 (90%) Strand = Plus / Plus Query: 1 aacaagaacatcctgatggaacgcgaccgccgccgcaagctcaatgagaagctctacacg 60 |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| || Sbjct: 339 aacaagaacatcctcatggagcgcgaccgccgccgcaagctcaacgagaagctctacgcg 398 Query: 61 ctccgcagcgtcgtgcccaacatcaccaagatggacaaggcctcgatcatcaaggacgcc 120 |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 399 ctccgcagtgtcgtgcccaacatcaccaagatggacaaggcgtcgatcatcaaggacgcg 458 Query: 121 atcgagtacatccaacatctgcaggcggaggagcggcagatggaggcggaggtgtccgcg 180 |||||||||||||| | |||||||||||||||| ||||||| |||||| ||||| Sbjct: 459 atcgagtacatccagcgcctgcaggcggaggagcagcagatgctccgggaggtcgccgcg 518 Query: 181 ctcgagtccgcc 192 |||||||||||| Sbjct: 519 ctcgagtccgcc 530
>emb|AL731621.3|OSJN00268 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0013O03, complete sequence Length = 118791 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Minus Query: 89 agatggacaaggcctcgatcatcaaggacgccatcgagtacatccaacatctgcaggcgg 148 ||||||||||||| |||||| | | ||||||||||| | ||||| | | ||||||| || Sbjct: 88448 agatggacaaggcgtcgatcgtgagggacgccatcgcgcacatcgagaagctgcaggagg 88389 Query: 149 aggagcggca 158 |||||||||| Sbjct: 88388 aggagcggca 88379
>dbj|AK109915.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-C06, full insert sequence Length = 1961 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 52 ctctacacgctccgcagcgtcgtgcccaacatcaccaagatggaca 97 ||||||| ||||||| |||||||||||| |||| ||||||||||| Sbjct: 1111 ctctacatgctccgctccgtcgtgcccaagatcagcaagatggaca 1156
>ref|NM_191645.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2058 Score = 44.1 bits (22), Expect = 0.45 Identities = 52/62 (83%) Strand = Plus / Plus Query: 73 gtgcccaacatcaccaagatggacaaggcctcgatcatcaaggacgccatcgagtacatc 132 |||||||| ||| |||||||||||||||| || | ||| |||||||||| ||||||| Sbjct: 1048 gtgcccaagatctccaagatggacaaggcgtccctgctcagcgacgccatcgcgtacatc 1107 Query: 133 ca 134 || Sbjct: 1108 ca 1109
>gb|AY452532.1| Chlamydomonas reinhardtii Oda5p (ODA5) mRNA, complete cds Length = 2832 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 143 aggcggaggagcggcagatggaggcggagg 172 ||||||||| ||| |||||||||||||||| Sbjct: 1788 aggcggaggtgcgacagatggaggcggagg 1817
>ref|XM_536177.2| PREDICTED: Canis familiaris similar to desmuslin isoform B (LOC479024), mRNA Length = 4350 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 139 ctgcaggcggaggagcggcaga 160 |||||||||||||||||||||| Sbjct: 1369 ctgcaggcggaggagcggcaga 1390
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 14 tgatggaacgcgaccgccgccg 35 |||||||||||||||||||||| Sbjct: 199145 tgatggaacgcgaccgccgccg 199124
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.45 Identities = 52/62 (83%) Strand = Plus / Plus Query: 73 gtgcccaacatcaccaagatggacaaggcctcgatcatcaaggacgccatcgagtacatc 132 |||||||| ||| |||||||||||||||| || | ||| |||||||||| ||||||| Sbjct: 29265761 gtgcccaagatctccaagatggacaaggcgtccctgctcagcgacgccatcgcgtacatc 29265820 Query: 133 ca 134 || Sbjct: 29265821 ca 29265822
>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0692C11 Length = 169562 Score = 44.1 bits (22), Expect = 0.45 Identities = 52/62 (83%) Strand = Plus / Plus Query: 73 gtgcccaacatcaccaagatggacaaggcctcgatcatcaaggacgccatcgagtacatc 132 |||||||| ||| |||||||||||||||| || | ||| |||||||||| ||||||| Sbjct: 44624 gtgcccaagatctccaagatggacaaggcgtccctgctcagcgacgccatcgcgtacatc 44683 Query: 133 ca 134 || Sbjct: 44684 ca 44685
>dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684B02 Length = 132470 Score = 44.1 bits (22), Expect = 0.45 Identities = 52/62 (83%) Strand = Plus / Plus Query: 73 gtgcccaacatcaccaagatggacaaggcctcgatcatcaaggacgccatcgagtacatc 132 |||||||| ||| |||||||||||||||| || | ||| |||||||||| ||||||| Sbjct: 111548 gtgcccaagatctccaagatggacaaggcgtccctgctcagcgacgccatcgcgtacatc 111607 Query: 133 ca 134 || Sbjct: 111608 ca 111609
>dbj|AK064946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P16, full insert sequence Length = 1980 Score = 44.1 bits (22), Expect = 0.45 Identities = 52/62 (83%) Strand = Plus / Plus Query: 73 gtgcccaacatcaccaagatggacaaggcctcgatcatcaaggacgccatcgagtacatc 132 |||||||| ||| |||||||||||||||| || | ||| |||||||||| ||||||| Sbjct: 1309 gtgcccaagatctccaagatggacaaggcgtccctgctcagcgacgccatcgcgtacatc 1368 Query: 133 ca 134 || Sbjct: 1369 ca 1370
>ref|NM_117738.2| Arabidopsis thaliana DNA binding / transcription factor AT4G16430 mRNA, complete cds Length = 1798 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 73 gtgcccaacatcaccaagatggacaaggc 101 ||||| |||||| |||||||||||||||| Sbjct: 1245 gtgcctaacatctccaagatggacaaggc 1273
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 13 ctgatggaacgcgaccgccgccgca 37 ||||||||||||||||| ||||||| Sbjct: 597964 ctgatggaacgcgaccggcgccgca 597940
>gb|AC128706.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0063F24, complete sequence Length = 152738 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 438 gctcgaggagctccgcctcag 458 ||||||||||||||||||||| Sbjct: 113797 gctcgaggagctccgcctcag 113817
>gb|AC134624.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041I05, complete sequence Length = 148785 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 438 gctcgaggagctccgcctcag 458 ||||||||||||||||||||| Sbjct: 10973 gctcgaggagctccgcctcag 10993
>ref|XM_543360.2| PREDICTED: Canis familiaris hypothetical protein LOC403528 (LOC403528), mRNA Length = 3527 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 432 ccgcgtgctcgaggagctccgcctc 456 |||||||||| |||||||||||||| Sbjct: 2896 ccgcgtgctccaggagctccgcctc 2872
>gb|BC040093.1| Mus musculus desmuslin, mRNA (cDNA clone IMAGE:3980674), with apparent retained intron Length = 2603 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 tgcaggcggaggagcggcaga 160 ||||||||||||||||||||| Sbjct: 749 tgcaggcggaggagcggcaga 769
>gb|BC026872.1| Mus musculus desmuslin, mRNA (cDNA clone IMAGE:3980674), containing frame-shift errors Length = 2603 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 tgcaggcggaggagcggcaga 160 ||||||||||||||||||||| Sbjct: 749 tgcaggcggaggagcggcaga 769
>emb|Z97341.2|ATFCA6 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6 Length = 213788 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 73 gtgcccaacatcaccaagatggacaaggc 101 ||||| |||||| |||||||||||||||| Sbjct: 33127 gtgcctaacatctccaagatggacaaggc 33155
>emb|AL161544.2|ATCHRIV44 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44 Length = 198735 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 73 gtgcccaacatcaccaagatggacaaggc 101 ||||| |||||| |||||||||||||||| Sbjct: 11055 gtgcctaacatctccaagatggacaaggc 11083
>emb|AJ579702.1|MIC579702 Mus musculus mRNA for synemin isoform L (synemin gene) Length = 4466 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 tgcaggcggaggagcggcaga 160 ||||||||||||||||||||| Sbjct: 856 tgcaggcggaggagcggcaga 876
>emb|AJ579701.1|MIC579701 Mus musculus mRNA for synemin isoform M (synemin gene) Length = 6913 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 tgcaggcggaggagcggcaga 160 ||||||||||||||||||||| Sbjct: 856 tgcaggcggaggagcggcaga 876
>emb|AJ579700.1|MIC579700 Mus musculus mRNA for synemin isoform H (synemin gene) Length = 7819 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 tgcaggcggaggagcggcaga 160 ||||||||||||||||||||| Sbjct: 856 tgcaggcggaggagcggcaga 876
>dbj|AK143019.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030041C04 product:desmuslin, full insert sequence Length = 4518 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 tgcaggcggaggagcggcaga 160 ||||||||||||||||||||| Sbjct: 906 tgcaggcggaggagcggcaga 926
>gb|AF251688.1|AF251688 Arabidopsis thaliana putative transcription factor BHLH3 (BHLH3) mRNA, complete cds Length = 1404 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 73 gtgcccaacatcaccaagatggacaaggc 101 ||||| |||||| |||||||||||||||| Sbjct: 1027 gtgcctaacatctccaagatggacaaggc 1055
>gb|AY057626.1| Arabidopsis thaliana AT4g16430/dl4240w mRNA, complete cds Length = 1792 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 73 gtgcccaacatcaccaagatggacaaggc 101 ||||| |||||| |||||||||||||||| Sbjct: 1245 gtgcctaacatctccaagatggacaaggc 1273
>gb|AF428368.1|AF428368 Arabidopsis thaliana AT4g16430/dl4240w mRNA, complete cds Length = 1788 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 73 gtgcccaacatcaccaagatggacaaggc 101 ||||| |||||| |||||||||||||||| Sbjct: 1239 gtgcctaacatctccaagatggacaaggc 1267
>gb|S74296.1| PDI [Humicola insolens, KASI, mRNA, 1754 nt] Length = 1754 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 300 cctgctcgccgcggcggcagttgcc 324 |||||| |||||||||||||||||| Sbjct: 139 cctgcttgccgcggcggcagttgcc 163
>gb|BT002301.1| Arabidopsis thaliana At4g16430/dl4240w mRNA, complete cds Length = 1404 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 73 gtgcccaacatcaccaagatggacaaggc 101 ||||| |||||| |||||||||||||||| Sbjct: 1027 gtgcctaacatctccaagatggacaaggc 1055
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 tcgagtccgccaccggcgcgg 202 ||||||||||||||||||||| Sbjct: 4143841 tcgagtccgccaccggcgcgg 4143821
>dbj|AB091769.1| Rattus norvegicus DMN mRNA for desmuslin, complete cds Length = 6447 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 tgcaggcggaggagcggcaga 160 ||||||||||||||||||||| Sbjct: 926 tgcaggcggaggagcggcaga 946
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 438 gctcgaggagctccgcctcag 458 ||||||||||||||||||||| Sbjct: 19891336 gctcgaggagctccgcctcag 19891356 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 tcgccgcggcggcagttgcc 324 |||||||||||||||||||| Sbjct: 10933994 tcgccgcggcggcagttgcc 10933975
>ref|NM_183312.2| Mus musculus desmuslin (Dmn), transcript variant 3, mRNA Length = 4466 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 tgcaggcggaggagcggcaga 160 ||||||||||||||||||||| Sbjct: 856 tgcaggcggaggagcggcaga 876
>ref|NM_207663.2| Mus musculus desmuslin (Dmn), transcript variant 2, mRNA Length = 6913 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 tgcaggcggaggagcggcaga 160 ||||||||||||||||||||| Sbjct: 856 tgcaggcggaggagcggcaga 876
>ref|NM_201639.1| Mus musculus desmuslin (Dmn), transcript variant 1, mRNA Length = 7819 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 tgcaggcggaggagcggcaga 160 ||||||||||||||||||||| Sbjct: 856 tgcaggcggaggagcggcaga 876
>ref|NM_185700.1| Oryza sativa (japonica cultivar-group), Ozsa8051 predicted mRNA Length = 402 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 gctcgccgcggcggcagttg 322 |||||||||||||||||||| Sbjct: 227 gctcgccgcggcggcagttg 208
>ref|NM_185690.1| Oryza sativa (japonica cultivar-group), Ozsa8041 predicted mRNA Length = 402 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 gctcgccgcggcggcagttg 322 |||||||||||||||||||| Sbjct: 227 gctcgccgcggcggcagttg 208
>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0045P14, complete sequence Length = 121894 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 tcgccgcggcggcagttgcc 324 |||||||||||||||||||| Sbjct: 44325 tcgccgcggcggcagttgcc 44306
>gb|AC153010.3| Mus musculus BAC clone RP23-325H1 from chromosome 15, complete sequence Length = 230097 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 aggaagaaggtgaagcgcgc 272 |||||||||||||||||||| Sbjct: 157834 aggaagaaggtgaagcgcgc 157853
>gb|AC142474.4| Mus musculus BAC clone RP24-362N7 from chromosome 15, complete sequence Length = 172879 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 aggaagaaggtgaagcgcgc 272 |||||||||||||||||||| Sbjct: 27166 aggaagaaggtgaagcgcgc 27185
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 tcgatcatcaaggacgccat 122 |||||||||||||||||||| Sbjct: 2394295 tcgatcatcaaggacgccat 2394314
>gb|AC107783.10| Mus musculus chromosome 1, clone RP23-38G5, complete sequence Length = 178062 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 acagaggaagaaggtgaagc 268 |||||||||||||||||||| Sbjct: 51406 acagaggaagaaggtgaagc 51387
>gb|AC158296.6| Mus musculus chromosome 7, clone RP24-78M9, complete sequence Length = 201897 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 tgcaggcggaggagcggcag 159 |||||||||||||||||||| Sbjct: 110974 tgcaggcggaggagcggcag 110955
>emb|BX571726.9| Zebrafish DNA sequence from clone DKEY-117I20 in linkage group 12, complete sequence Length = 106819 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 ccaacatctgcaggcggagg 151 |||||||||||||||||||| Sbjct: 79440 ccaacatctgcaggcggagg 79421
>gb|AE011852.1| Xanthomonas axonopodis pv. citri str. 306, section 230 of 469 of the complete genome Length = 10091 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 tcgatcatcaaggacgccat 122 |||||||||||||||||||| Sbjct: 5518 tcgatcatcaaggacgccat 5499
>gb|AC092377.3| Homo sapiens chromosome 16 clone RP11-680G10, complete sequence Length = 207283 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 247 gcacagaggaagaaggtgaagcgcgctc 274 ||||||||||||||| ||||| |||||| Sbjct: 190377 gcacagaggaagaagttgaagggcgctc 190404
>ref|XM_694135.1| PREDICTED: Danio rerio similar to LOC495012 protein (LOC570631), mRNA Length = 4335 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ccaacatctgcaggcggagg 151 |||||||||||||||||||| Sbjct: 649 ccaacatctgcaggcggagg 668
>gb|AC148816.3| Medicago truncatula chromosome 7 BAC clone mth2-16i24, complete sequence Length = 123655 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 gcaagctcaatgagaagctc 54 |||||||||||||||||||| Sbjct: 10918 gcaagctcaatgagaagctc 10937
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 tcgccgcggcggcagttgcc 324 |||||||||||||||||||| Sbjct: 10854805 tcgccgcggcggcagttgcc 10854786
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 gctcgccgcggcggcagttg 322 |||||||||||||||||||| Sbjct: 3898641 gctcgccgcggcggcagttg 3898660 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 gctcgccgcggcggcagttg 322 |||||||||||||||||||| Sbjct: 3886818 gctcgccgcggcggcagttg 3886837 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 gctcgccgcggcggcagttg 322 |||||||||||||||||||| Sbjct: 3848762 gctcgccgcggcggcagttg 3848781
>emb|BX827421.1|CNS0A49A Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS52ZD03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1652 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 73 gtgcccaacatcaccaagatggacaagg 100 ||||| |||||| ||||||||||||||| Sbjct: 1215 gtgcctaacatctccaagatggacaagg 1242
>gb|AC092275.3| Homo sapiens chromosome 16 clone CTC-786C10, complete sequence Length = 191996 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 247 gcacagaggaagaaggtgaagcgcgctc 274 ||||||||||||||| ||||| |||||| Sbjct: 37194 gcacagaggaagaagttgaagggcgctc 37221
>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0035I03 Length = 153749 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 gctcgccgcggcggcagttg 322 |||||||||||||||||||| Sbjct: 4517 gctcgccgcggcggcagttg 4536
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 ggaggtcctggagctgcgcg 355 |||||||||||||||||||| Sbjct: 2812906 ggaggtcctggagctgcgcg 2812925
>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0015E04 Length = 152046 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 gctcgccgcggcggcagttg 322 |||||||||||||||||||| Sbjct: 144772 gctcgccgcggcggcagttg 144791 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 gctcgccgcggcggcagttg 322 |||||||||||||||||||| Sbjct: 106716 gctcgccgcggcggcagttg 106735
>dbj|AK110406.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-165-G06, full insert sequence Length = 2295 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 aggacgccatcgagtacatc 132 |||||||||||||||||||| Sbjct: 2123 aggacgccatcgagtacatc 2142
>ref|NM_208391.1| Eremothecium gossypii ABR092Cp (ABR092C), mRNA Length = 3006 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 200 cggacgatgactgcgacggcggcc 223 ||||||||| |||||||||||||| Sbjct: 122 cggacgatggctgcgacggcggcc 145
>gb|BT023986.1| Zea mays clone EL01N0413D04 mRNA sequence Length = 1441 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 69 cgtcgtgcccaacatcaccaagatggac 96 |||||||||||| |||| |||||||||| Sbjct: 664 cgtcgtgcccaagatcagcaagatggac 691
>gb|AC101874.8| Mus musculus chromosome 7, clone RP23-366A20, complete sequence Length = 179708 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 tgcaggcggaggagcggcag 159 |||||||||||||||||||| Sbjct: 91793 tgcaggcggaggagcggcag 91812
>gb|AY105097.1| Zea mays PCO128421 mRNA sequence Length = 860 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 69 cgtcgtgcccaacatcaccaagatggac 96 |||||||||||| |||| |||||||||| Sbjct: 82 cgtcgtgcccaagatcagcaagatggac 109
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 7.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 423 caaggtgtgccgcgtgctcgaggagctc 450 ||||||| ||||||||||||| |||||| Sbjct: 2729608 caaggtgcgccgcgtgctcgacgagctc 2729635
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cgccctgctcgccgcggcgg 316 |||||||||||||||||||| Sbjct: 4134195 cgccctgctcgccgcggcgg 4134176
>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II, complete sequence Length = 867699 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 200 cggacgatgactgcgacggcggcc 223 ||||||||| |||||||||||||| Sbjct: 554626 cggacgatggctgcgacggcggcc 554603 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,894,932 Number of Sequences: 3902068 Number of extensions: 3894932 Number of successful extensions: 84034 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82796 Number of HSP's gapped (non-prelim): 1234 length of query: 524 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 501 effective length of database: 17,143,297,704 effective search space: 8588792149704 effective search space used: 8588792149704 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
