>FLUG_EMENI (P38094) Protein fluG|
          Length = 865

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 10/147 (6%)
 Frame = +1

Query: 85  ARYAELRRAVEETAVVDAHAHNLVDTASS-----FPFLRCFSEADGDALAFAPHSLSFKR 249
           A  + LR  ++   ++D HAHNL+  +++     +PF +  SEA G ALA AP +LSF R
Sbjct: 2   ATLSSLRHLIQTHPLIDNHAHNLLSQSAACKYAKYPFEQIISEAQGVALANAPSTLSFHR 61

Query: 250 SLKDIAALYGCEA----SLEKVEEFRKSQGLSSIGSKCFQAANISTILVDDGIAFDKMLE 417
           +   +A LY   +    S+    +    +    +  KC +   +  +L+DD +  + +  
Sbjct: 62  AASQLATLYQSSSSDWDSVRAARDQSVQRDYEGLIRKCLEGTQV--LLLDDLLTENDVEL 119

Query: 418 LEAHKEFVPT-VGRVLRIEWLAETIIN 495
            + H  F  +   R++RIE LA ++++
Sbjct: 120 FDWHDRFTASATKRIVRIEALAASVLS 146

>LRC47_HUMAN (Q8N1G4) Leucine-rich repeat-containing protein 47|
          Length = 583

 Score = 32.7 bits (73), Expect = 0.69
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +1

Query: 49  EA*ASDRRRSMEARYAELRRAVEETAVVDAHAH-NLVDTASSFPFLRCFSEADGDALAFA 225
           EA A +  R ++    E R+  +  +V   H + +L+D   ++P   C  +ADGD ++F 
Sbjct: 406 EAKAKELVRQLQLEAEEQRKQKKRQSVSGLHRYLHLLDGNENYP---CLVDADGDVISFP 462

Query: 226 PHSLSFKRSLK 258
           P + S K  +K
Sbjct: 463 PITNSEKTKVK 473

>LRC47_MOUSE (Q505F5) Leucine-rich repeat-containing protein 47|
          Length = 581

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +1

Query: 49  EA*ASDRRRSMEARYAELRRAVEETAVVDAHAH-NLVDTASSFPFLRCFSEADGDALAFA 225
           EA A +  R ++    E R+  +  +V   H + +L+D   ++P   C  +A+GD ++F 
Sbjct: 405 EAKAKELVRQLQLEAEEQRKQKKRQSVSGLHRYLHLLDGKENYP---CLVDAEGDVISFP 461

Query: 226 PHSLSFKRSLK 258
           P + S K  +K
Sbjct: 462 PITNSEKTKIK 472

>CSD_BACHD (Q9K7A0) Probable cysteine desulfurase (EC 2.8.1.7)|
          Length = 406

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = +1

Query: 112 VEETAVVDAHAHN---LVDTASSFPFLRC-FSEADGDALAFAPHSLSFKRSLKDIAALYG 279
           V+E A + AH H    LVD A S P ++    E   D  AF+ H ++       I  LYG
Sbjct: 181 VKEIAEI-AHRHGAIMLVDGAQSAPHMKIDVQELGCDFFAFSGHKMAGPTG---IGVLYG 236

Query: 280 CEASLEKVE 306
            +A LEK+E
Sbjct: 237 KKAHLEKME 245

>EFTS_WOLSU (Q7MAK1) Elongation factor Ts (EF-Ts)|
          Length = 355

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +1

Query: 268 ALYGCEASLEKVEEFRKSQGLSSIGSKCFQAANISTILVDDGIAFDK--MLELEAHKEFV 441
           AL   +  +EK  E+ + +GLS    K  + A+   + V+    F K  +LE+ +  +FV
Sbjct: 26  ALVETDGDIEKAVEYLREKGLSKAAKKADRVASEGVVSVEVASDFSKASLLEINSETDFV 85

Query: 442 PTVGRVLRIEWLAETIINDDSFSGS 516
               +   +      +++D + S +
Sbjct: 86  AKNEQFKELVAKTSKLVHDHALSST 110

>EFTS_HELHP (Q7VH96) Elongation factor Ts (EF-Ts)|
          Length = 355

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +1

Query: 268 ALYGCEASLEKVEEFRKSQGLSSIGSKCFQAANISTILVDDGIAFDK--MLELEAHKEFV 441
           AL   E +LEK  E+ + +GLS    K  + A+   + V+    F K  ++E+ +  +FV
Sbjct: 26  ALVETEGNLEKAVEYLREKGLSKAAKKADRIASEGIVSVEVANDFSKASIIEINSETDFV 85

Query: 442 PTVGRVLRIEWLAETIINDDSFSGS 516
                   +      I+ D++ S +
Sbjct: 86  AKNDTFKELVAQTSKIVYDNALSSA 110

>PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type-1|
           retrotransposable element R2 (Retrovirus-related Pol
           polyprotein from type I retrotransposable element R2)
           [Includes: Reverse transcriptase (EC 2.7.7.49);
           Endonuclease] (Fragment)
          Length = 1025

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 22/59 (37%), Positives = 31/59 (52%)
 Frame = +1

Query: 277 GCEASLEKVEEFRKSQGLSSIGSKCFQAANISTILVDDGIAFDKMLELEAHKEFVPTVG 453
           G +ASL ++E   + QGL  +  KC   A     LV  G   +K +++E HK F  TVG
Sbjct: 566 GLQASLSRIEAGLQEQGLEMMPRKCHTLA-----LVPSG--KEKKIKVETHKPF--TVG 615

>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = +2

Query: 8   EGAXPGKSPSTPRLKRERATGGGAWRPGTRS 100
           EGA PG +P  P   R R  GGG  RPG  S
Sbjct: 80  EGA-PGAAPEPPPAGRARPGGGGPQRPGPPS 109

>TAT_HV2D1 (P17759) TAT protein (Transactivating regulatory protein)|
          Length = 130

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 1   KQGRRR--PRKISQHSPAEA*ASDRRRSMEARYAELRRAVEETAVVDA 138
           +QGRRR  PRK   H P  +  S   R+ +++  + ++   ET VV A
Sbjct: 78  RQGRRRRTPRKTKTHPPPASDKSISTRTGDSQPTKKQKKTPETTVVSA 125

>PCRA_BACSU (O34580) ATP-dependent DNA helicase pcrA (EC 3.6.1.-)|
          Length = 739

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 13/86 (15%)
 Frame = +1

Query: 202 DGDALAFAPHSL--SFKRSLKDIAALYGCEASLEKVEEFRKSQGLSSI---GSKCFQAAN 366
           +G  +A   H L  + KR L DIA LY   A    +EE     GL+     G+K +    
Sbjct: 332 EGQFVAGKIHQLHSTGKRKLSDIAILYRTNAQSRVIEETLLKAGLNYNIVGGTKFYDRKE 391

Query: 367 ISTILV--------DDGIAFDKMLEL 420
           I  IL         DD I+F +++ +
Sbjct: 392 IKDILAYLRLVSNPDDDISFTRIVNV 417


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,660,160
Number of Sequences: 219361
Number of extensions: 1192783
Number of successful extensions: 3924
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3923
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)