>HRX_MOUSE (P55200) Zinc finger protein HRX (ALL-1) (Fragment)|
          Length = 3866

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 16/62 (25%), Positives = 34/62 (54%)
 Frame = +2

Query: 230  LDLQKIELRVDGLEYSGVAEFIADMQQMLKSVVQHFGYRHEVRVEAEILHNLFFNIMKIA 409
            LDL+ ++ R+D   Y  V EF  D+ +++++ +   G + E++    ++ + F   M+  
Sbjct: 1608 LDLEGVKKRMDQGSYVSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVKSFFIRQMERV 1667

Query: 410  FP 415
            FP
Sbjct: 1668 FP 1669

>CECR2_HUMAN (Q9BXF3) Cat eye syndrome critical region protein 2|
          Length = 1484

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +2

Query: 230 LDLQKIELRVDGLEYSGVAEFIADMQQMLKSVVQHFGYRHEVRVEAEILHNLFFNIMKIA 409
           +D+  +E +++G  Y    EF+ DM+ M ++  ++ G   E    ++ L   F   M   
Sbjct: 479 MDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDNLERCFHRAMMKH 538

Query: 410 FPDSD 424
           FP  D
Sbjct: 539 FPGED 543

>BRD3_HUMAN (Q15059) Bromodomain-containing protein 3 (RING3-like protein)|
          Length = 726

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = +2

Query: 230 LDLQKIELRVDGLEYSGVAEFIADMQQMLKSVVQHFGYRHEVRVEAEILHNLF 388
           +DL  ++ ++DG EY     F AD++ M  +  ++    HEV   A  L ++F
Sbjct: 356 MDLSTVKRKMDGREYPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVF 408

>YCK2_SCHPO (Q9Y7N0) Hypothetical bromodomain protein C1450.02|
          Length = 578

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +2

Query: 215 VAGSTLDLQKIELRVDGLEYSGVAEFIADMQQMLKSVVQHFGYRHEVRVEAEILHNLFFN 394
           +  + +DL  IE ++   EYS   EFI DM  M  +   + G    V    + L  +F  
Sbjct: 126 IVKNPMDLGTIEKKLTSYEYSVPQEFIDDMNLMFSNCFLYNGTESPVGSMGKALQEVFER 185

Query: 395 IMKIAFPDSD 424
            +K   PD++
Sbjct: 186 QLK-QLPDAE 194

>KRA54_HUMAN (Q6L8H1) Keratin-associated protein 5-4 (Keratin-associated protein|
           5.4) (Ultrahigh sulfur keratin-associated protein 5.4)
          Length = 288

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -1

Query: 149 PLCQFSS--KACLLHSCTFFAYCQTSLCQQN**PCCSNSXLGCSADPSA 9
           P C  S    +C   SC     CQ+S C+    PCCS+S  G S   S+
Sbjct: 223 PCCSSSGCGSSCCQSSCCKPYCCQSSCCK----PCCSSSGCGSSCCQSS 267

>ISPH2_RHOPA (Q6N1Y1) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 (EC|
           1.17.1.2)
          Length = 320

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -1

Query: 350 HVCSRNVEPHFSTSAACPL*TQLHRYTLIH 261
           H  SRN    FS  A CPL T++HR   IH
Sbjct: 90  HALSRNF---FSIDATCPLVTKVHREAAIH 116

>Y1952_STRCO (Q9Z513) UPF0042 protein SCO1952|
          Length = 299

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 13/56 (23%), Positives = 34/56 (60%)
 Frame = +2

Query: 224 STLDLQKIELRVDGLEYSGVAEFIADMQQMLKSVVQHFGYRHEVRVEAEILHNLFF 391
           S+L++ ++  ++D       A+F  D +  L++ V  FG+++ + V+A+++ ++ F
Sbjct: 154 SSLNVHELRAKMD-------AQFAGDQEPELRATVMSFGFKYGLPVDADLVVDMRF 202

>BRD3_MOUSE (Q8K2F0) Bromodomain-containing protein 3 (Bromodomain-containing|
           FSH-like protein FSRG2)
          Length = 726

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +2

Query: 230 LDLQKIELRVDGLEYSGVAEFIADMQQMLKSVVQHFGYRHEVRVEAEILHNLF 388
           +DL  ++ ++D  EY     F AD++ M  +  ++    HEV   A  L ++F
Sbjct: 355 MDLSTVKRKMDSREYPDAQGFAADIRLMFSNCYKYNPPDHEVVAMARKLQDVF 407


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,632,280
Number of Sequences: 219361
Number of extensions: 1647928
Number of successful extensions: 5064
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5056
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)