>YO125_YEAST (Q12383) Uncharacterized protein YOL125W|
          Length = 476

 Score = 80.1 bits (196), Expect = 5e-15
 Identities = 55/229 (24%), Positives = 94/229 (41%), Gaps = 34/229 (14%)
 Frame = +2

Query: 23  SXNIFLVERRAYKLKADRSLRQNEGV-------------KLERLRIDIEDLNLHGVQALS 163
           S    L++R   ++K D+ ++ +                 ++R++IDI DL +  +   +
Sbjct: 236 SNEFVLIDRATNRMKFDKKIKDDFSEIKSNSPSKPISCPSIKRIKIDIRDLKMDPILKST 295

Query: 164 GG---QYLAIGKHLCGPATDMTIMCCLHEQHNRTEEKGHNKHHLRGLALATCCHHLCQWK 334
            G   QY+ I KHLCG ATD+T+ C  +      ++       L+ + +A CC H+C + 
Sbjct: 296 PGDDIQYVCISKHLCGVATDLTLRCIGNSSILHGDDNNGCNPKLKAICIAMCCRHVCDYG 355

Query: 335 HYANKSFLSGLG----------IAEEEFHAMTWFSSWAVDGDHSSQDSLEAEDLSSEGRE 484
            Y N+S+++ L             E  F  +T   SW   G                   
Sbjct: 356 DYVNRSYVTSLVEKYRAHGSILTYETFFRVLTKLCSWGTCG------------------- 396

Query: 485 TEKPDPEIIGVERIIRSIPGV--------ERSALGFMCKDIIDTGRLLW 607
             KP   I  +  ++ S  G         ER  +G M + +ID GRL++
Sbjct: 397 -RKPGTAITDIVNVVESFEGAEPYTITIKERENIGLMARRVIDEGRLVY 444

>DDX46_BRARE (Q4TVV3) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)|
           (DEAD box protein 46)
          Length = 1018

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = +2

Query: 326 QWKHYANKSFLSGLGIAEEEFHAMTWFSSWAVDGDHSSQDSLEAEDLSSEGRETEKPDPE 505
           +W+    K+ +  +G  ++E   M     W+++ D   QD       ++E  E+E+ + E
Sbjct: 137 KWREEQRKTAMENIGEIKKELEEMKQGKKWSLEDDDEEQDK------AAEAEESERMEEE 190

Query: 506 IIGVE 520
            +G E
Sbjct: 191 EVGEE 195

>HERC2_MOUSE (Q4U2R1) HECT domain and RCC1-like domain-containing protein 2|
          Length = 4836

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
 Frame = -3

Query: 561  RALLSTPGILRIILSTPIISGSGFSVSLPSEDKSSASKESWELWSPSTAQ----LLNHVM 394
            RALLS    LR ILS P + G+G   +L ++D ++AS +  ++ SP   Q    LL  ++
Sbjct: 2331 RALLSHQDKLRQILSQPAVQGTG---TLQTDDGAAASPDLGDM-SPEGPQPPMILLQQLL 2386

Query: 393  AWNSSSAIPSP 361
               SS+  PSP
Sbjct: 2387 ---SSATQPSP 2394

>MUSK_MOUSE (Q61006) Muscle, skeletal receptor tyrosine protein kinase|
           precursor (EC 2.7.10.1) (Muscle-specific kinase
           receptor) (MuSK)
          Length = 868

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 62  LKADRSLRQNEGVKLERLRIDIEDLNLHGVQALSGGQYLAIGKHLCGPA 208
           +K D +LR+N  + +    ++   L +H VQ    GQY  + K+  G A
Sbjct: 155 IKGDNALRENSRIAV----LESGSLRIHNVQKEDAGQYRCVAKNSLGTA 199

>FLO9_YEAST (P39712) Flocculation protein FLO9 precursor|
          Length = 1322

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 22/82 (26%), Positives = 39/82 (47%)
 Frame = -3

Query: 585  MISLHMNPRALLSTPGILRIILSTPIISGSGFSVSLPSEDKSSASKESWELWSPSTAQLL 406
            +IS  +    + S+P I    +S+P+IS +  S S+ SE   S+   +    S S+    
Sbjct: 907  VISSSVTSSLVTSSPVISSSFISSPVISSTTTSASILSESSKSSVIPTSSSTSGSSESET 966

Query: 405  NHVMAWNSSSAIPSPERKDLFA 340
                + +SSS+I S   K  ++
Sbjct: 967  GSASSASSSSSISSESPKSTYS 988

>MUSK_RAT (Q62838) Muscle, skeletal receptor tyrosine protein kinase|
           precursor (EC 2.7.10.1) (Muscle-specific kinase
           receptor) (MuSK)
          Length = 868

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 62  LKADRSLRQNEGVKLERLRIDIEDLNLHGVQALSGGQYLAIGKHLCGPA 208
           +K D +LR+N  + +    ++   L +H VQ    GQY  + K+  G A
Sbjct: 155 IKGDSALRENSRIAV----LESGSLRIHNVQKEDAGQYRCVAKNSLGTA 199

>GLR13_ARATH (Q9FH75) Glutamate receptor 1.3 precursor (Ligand-gated ion channel|
           1.3)
          Length = 860

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +2

Query: 11  AVMASXNIFLVERRAYKLKADRSLRQNEGVKLERLRIDIEDLNLHGVQALSGGQYLAIGK 190
           +V  + + F      YK +   SLR + G  L  L   ++ L   GV+A+ GG  L   K
Sbjct: 61  SVSMALSYFYAIHNDYKTRVSVSLRNSHGEPLLALASAVDLLKTEGVEAIIGGNSLLEAK 120

Query: 191 HL 196
            L
Sbjct: 121 LL 122

>GS17_XENLA (P07733) Gastrula-specific protein 17|
          Length = 147

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
 Frame = -3

Query: 588 SMISLHMNPRALLSTPGILRIILSTPIISGSGFSVSLPSEDKSSASKESWELWSPSTAQL 409
           S  S H +P+   STP  L    S   IS +    + P+       ++ W+ WSP   QL
Sbjct: 20  SPTSRHPSPKVWNSTPPSLERGPSERQISPTPDQYTNPNR-----RRQPWKDWSPGRWQL 74

Query: 408 L-NHVMAWNSSSAIP-----SPERKDLF 343
           L N   +W  S   P     +PE K  F
Sbjct: 75  LQNQRQSWGLSPTAPTRHKRTPEPKPFF 102

>DCC_MOUSE (P70211) Netrin receptor DCC precursor (Tumor suppressor protein|
           DCC)
          Length = 1447

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = -1

Query: 458 QPPKSPGSCGHHPQPNC*TMSWHGTLPPQSLVQRGKI 348
           Q P  P S    PQ NC  MSW   L P ++V RG I
Sbjct: 724 QVPDQPSSLHVRPQTNCIIMSWTPPLNP-NIVVRGYI 759

>DCC_HUMAN (P43146) Netrin receptor DCC precursor (Tumor suppressor protein|
           DCC) (Colorectal cancer suppressor)
          Length = 1447

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = -1

Query: 458 QPPKSPGSCGHHPQPNC*TMSWHGTLPPQSLVQRGKI 348
           Q P  P S    PQ NC  MSW   L P ++V RG I
Sbjct: 724 QVPDQPSSLHVRPQTNCIIMSWTPPLNP-NIVVRGYI 759

>MUSK_HUMAN (O15146) Muscle, skeletal receptor tyrosine protein kinase|
           precursor (EC 2.7.10.1) (Muscle-specific tyrosine
           protein kinase receptor) (Muscle-specific kinase
           receptor) (MuSK)
          Length = 869

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 62  LKADRSLRQNEGVKLERLRIDIEDLNLHGVQALSGGQYLAIGKHLCGPA 208
           +K D  LR+N  + +    ++   L +H VQ    GQY  + K+  G A
Sbjct: 155 IKGDSPLRENSRIAV----LESGSLRIHNVQKEDAGQYRCVAKNSLGTA 199


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,750,107
Number of Sequences: 219361
Number of extensions: 2124240
Number of successful extensions: 6155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6142
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)