ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah63n11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470169.1| Oryza sativa (japonica cultivar-group), mRNA 182 9e-43
2ref|XM_470313.1| Oryza sativa (japonica cultivar-group), mRNA 153 8e-34
3dbj|AK102870.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 8e-34
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 100 1e-17
5gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genom... 100 1e-17
6gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genom... 100 1e-17
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
8ref|NM_116418.2| Arabidopsis thaliana unknown protein AT4G01880 ... 54 6e-04
9gb|AC126941.3| Mus musculus BAC clone RP23-133N24 from chromosom... 42 2.1
10gb|AC118470.2| Homo sapiens chromosome 1 clone RP11-634B7, compl... 42 2.1
11gb|AC130460.2| Homo sapiens chromosome 16 clone CTA-485G10, comp... 42 2.1
12gb|AC084797.5| Homo sapiens chromosome 16 clone RP11-62O3, compl... 42 2.1
13gb|AC144543.4| Mus musculus BAC clone RP23-394E9 from 12, comple... 42 2.1
14emb|AL805969.13| Mouse DNA sequence from clone RP23-40L1 on chro... 42 2.1
15ref|NM_153833.1| Homo sapiens H1 histone family, member O, oocyt... 40 8.3
16gb|AC005576.1| Homo sapiens chromosome 5, P1 clone 918f8 (LBNL H... 40 8.3
17gb|BC063091.1| Mus musculus cDNA clone IMAGE:30145107, partial cds 40 8.3
18emb|CR942592.2| Xenopus tropicalis finished cDNA, clone TGas068i16 40 8.3
19gb|AC127273.3| Mus musculus BAC clone RP24-142K18 from chromosom... 40 8.3
20gb|AC104914.9| Mus musculus chromosome 9, clone RP23-108E20, com... 40 8.3
21ref|XM_766372.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 8.3
22gb|AC146480.2| Danio rerio clone CH211-40O9, complete sequence 40 8.3
23emb|AL590362.12| Human DNA sequence from clone RP11-214G2 on chr... 40 8.3
24emb|X73573.1|MMHOXDMRA M.musculus Hoxd-3 mRNA, complete CDS 40 8.3
25gb|U03496.1|AH005407S1 Mus musculus homeobox containing protein ... 40 8.3
26dbj|AK138525.1| Mus musculus adult male spinal cord cDNA, RIKEN ... 40 8.3
27dbj|AK133705.1| Mus musculus 6 days neonate head cDNA, RIKEN ful... 40 8.3
28ref|XM_678153.1| PREDICTED: Danio rerio similar to CG14127-PA (L... 40 8.3
29gb|AC015584.18| Mus musculus, clone RP23-400H17, complete sequence 40 8.3
30ref|XM_687358.1| PREDICTED: Danio rerio similar to cadherin-rela... 40 8.3
31ref|XM_691548.1| PREDICTED: Danio rerio similar to CG14127-PA (L... 40 8.3
32gb|AC026754.5| Homo sapiens chromosome 5 clone P1_356B7, complet... 40 8.3
33gb|AY158091.1| Homo sapiens oocyte-specific histone H1 mRNA, com... 40 8.3
34dbj|AK087919.1| Mus musculus 2 days pregnant adult female ovary ... 40 8.3
35ref|NM_001008484.1| Danio rerio protocadherin 2 alpha b 3 (pcdh2... 40 8.3
36dbj|AK048729.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 40 8.3
37gb|AC148670.1| Macaca mulatta Major Histocompatibility Complex B... 40 8.3
38gb|AC080007.26| Homo sapiens 3 BAC RP11-529F4 (Roswell Park Canc... 40 8.3
39ref|NM_001008483.1| Danio rerio protocadherin 2 alpha b 5 (pcdh2... 40 8.3
40ref|XM_213633.3| PREDICTED: Rattus norvegicus homeo box D3 (Hoxd... 40 8.3
41dbj|AB075933.1| Danio rerio mRNA for cadherin-related neuronal r... 40 8.3
42dbj|AB075932.1| Danio rerio mRNA for cadherin-related neuronal r... 40 8.3
43dbj|AB075931.1| Danio rerio mRNA for cadherin-related neuronal r... 40 8.3
44dbj|AB075928.1| Danio rerio CNR family (zCNRv1, zCNRv2, zCNRv3, ... 40 8.3
45emb|AL929558.13| Zebrafish DNA sequence from clone CH211-159N7, ... 40 8.3
46emb|AL928733.14| Mouse DNA sequence from clone RP23-190O13 on ch... 40 8.3
47gb|AC124762.4| Mus musculus BAC clone RP23-155A10 from 6, comple... 40 8.3
48emb|BX255921.2| Zebrafish DNA sequence from clone CH211-236K19 i... 40 8.3
49gb|U56401.1|MMU56401 Mus musculus Hoxd3 gene, complete cds 40 8.3
50gb|U56400.1|MMU56400 Mus musculus Hoxd3 mRNA, complete cds 40 8.3
51ref|NM_010468.1| Mus musculus homeo box D3 (Hoxd3), mRNA 40 8.3
52gb|AC141637.3| Mus musculus BAC clone RP23-424D5 from 9, complet... 40 8.3
53emb|AL845492.10| Mouse DNA sequence from clone RP23-222P7 on chr... 40 8.3
54emb|AL671011.9| Mouse DNA sequence from clone RP23-95O23 on chro... 40 8.3
55emb|X73572.1|MMHOXDGNA M.musculus Hoxd-3 gene, complete CDS 40 8.3
56emb|AL611945.21| Mouse DNA sequence from clone RP23-48A7 on chro... 40 8.3 
>ref|XM_470169.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1570

 Score =  182 bits (92), Expect = 9e-43
 Identities = 179/208 (86%)
 Strand = Plus / Plus

                                                                       
Query: 35  ttcttggtcgagagacgagcttacaagctcaaggctgatcgaagtttaaggcaaaatgag 94
           |||||||| |||||| || | ||||||||||||||||||||||||||  | |||||||| 
Sbjct: 676 ttcttggttgagagaagatcatacaagctcaaggctgatcgaagtttgcgacaaaatgaa 735

                                                                       
Query: 95  ggtgttaaattggagcgtttgagaatagatattgaggatttgaacctgcatggagtccaa 154
           || ||||  ||| ||||||||||||| |||||||| ||||||||||| || ||| |  | 
Sbjct: 736 ggcgttactttgaagcgtttgagaattgatattgaagatttgaaccttcaaggaatagag 795

                                                                       
Query: 155 gcgttgagtgggggtcagtatctagcaattggaaaacatctatgtgggcctgcaacagat 214
           || ||||||||   ||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 796 gcattgagtggacttcattatctagcaattggaaagcatctatgtggacctgcaacagat 855

                                       
Query: 215 atgaccataatgtgctgtcttcatgaac 242
           |||||||| |||||||| ||||||||||
Sbjct: 856 atgaccatgatgtgctgccttcatgaac 883



 Score =  153 bits (77), Expect = 8e-34
 Identities = 157/183 (85%), Gaps = 3/183 (1%)
 Strand = Plus / Plus

                                                                        
Query: 290  ggccttgctttagcaacctgctgccaccatctctgtcaatggaagcattatgcaaataaa 349
            ||||||||||| || ||||||||||||||||| || |||||||| || ||||||||||| 
Sbjct: 931  ggccttgctttggccacctgctgccaccatctgtgccaatggaatcactatgcaaataag 990

                                                                        
Query: 350  tctttcctctctggactagggattgcggaggaagagttccatgccatgacatggtttagc 409
             | |||||||| ||  |||||||| | |||||||| |||||| ||||||| |||||||||
Sbjct: 991  acattcctctcagggttagggattacagaggaagatttccataccatgacttggtttagc 1050

                                                                        
Query: 410  agttgggctgtggatggtgaccacagctcccagga---ctctttggaggctgaagactta 466
            || ||||||||||||||||| |||||||||| |||   |||||| |||| |||||||| |
Sbjct: 1051 agctgggctgtggatggtgatcacagctccccggattcctctttagaggttgaagactca 1110

               
Query: 467  tct 469
            |||
Sbjct: 1111 tct 1113
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>ref|XM_470313.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1242

 Score =  153 bits (77), Expect = 8e-34
 Identities = 157/183 (85%), Gaps = 3/183 (1%)
 Strand = Plus / Plus

                                                                        
Query: 290  ggccttgctttagcaacctgctgccaccatctctgtcaatggaagcattatgcaaataaa 349
            ||||||||||| || ||||||||||||||||| || |||||||| || ||||||||||| 
Sbjct: 844  ggccttgctttggccacctgctgccaccatctgtgccaatggaatcactatgcaaataag 903

                                                                        
Query: 350  tctttcctctctggactagggattgcggaggaagagttccatgccatgacatggtttagc 409
             | |||||||| ||  |||||||| | |||||||| |||||| ||||||| |||||||||
Sbjct: 904  acattcctctcagggttagggattacagaggaagatttccataccatgacttggtttagc 963

                                                                        
Query: 410  agttgggctgtggatggtgaccacagctcccagga---ctctttggaggctgaagactta 466
            || ||||||||||||||||| |||||||||| |||   |||||| |||| |||||||| |
Sbjct: 964  agctgggctgtggatggtgatcacagctccccggattcctctttagaggttgaagactca 1023

               
Query: 467  tct 469
            |||
Sbjct: 1024 tct 1026



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                       
Query: 35  ttcttggtcgagagacgagcttacaagctcaaggctgatcgaagtttaaggcaaaatgag 94
           |||||||| |||||| || | ||||||||||||||||||||||||||  | |||||||| 
Sbjct: 676 ttcttggttgagagaagatcatacaagctcaaggctgatcgaagtttgcgacaaaatgaa 735

                                          
Query: 95  ggtgttaaattggagcgtttgagaatagata 125
           || ||||  ||| ||||||||||||| ||||
Sbjct: 736 ggcgttactttgaagcgtttgagaattgata 766
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>dbj|AK102870.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111P07, full
            insert sequence
          Length = 1450

 Score =  153 bits (77), Expect = 8e-34
 Identities = 157/183 (85%), Gaps = 3/183 (1%)
 Strand = Plus / Plus

                                                                        
Query: 290  ggccttgctttagcaacctgctgccaccatctctgtcaatggaagcattatgcaaataaa 349
            ||||||||||| || ||||||||||||||||| || |||||||| || ||||||||||| 
Sbjct: 999  ggccttgctttggccacctgctgccaccatctgtgccaatggaatcactatgcaaataag 1058

                                                                        
Query: 350  tctttcctctctggactagggattgcggaggaagagttccatgccatgacatggtttagc 409
             | |||||||| ||  |||||||| | |||||||| |||||| ||||||| |||||||||
Sbjct: 1059 acattcctctcagggttagggattacagaggaagatttccataccatgacttggtttagc 1118

                                                                        
Query: 410  agttgggctgtggatggtgaccacagctcccagga---ctctttggaggctgaagactta 466
            || ||||||||||||||||| |||||||||| |||   |||||| |||| |||||||| |
Sbjct: 1119 agctgggctgtggatggtgatcacagctccccggattcctctttagaggttgaagactca 1178

               
Query: 467  tct 469
            |||
Sbjct: 1179 tct 1181



 Score =  107 bits (54), Expect = 4e-20
 Identities = 66/70 (94%)
 Strand = Plus / Plus

                                                                       
Query: 173 tatctagcaattggaaaacatctatgtgggcctgcaacagatatgaccataatgtgctgt 232
           ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| 
Sbjct: 882 tatctagcaattggaaagcatctatgtggacctgcaacagatatgaccatgatgtgctgc 941

                     
Query: 233 cttcatgaac 242
           ||||||||||
Sbjct: 942 cttcatgaac 951
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 103/120 (85%), Gaps = 3/120 (2%)
 Strand = Plus / Plus

                                                                            
Query: 353      ttcctctctggactagggattgcggaggaagagttccatgccatgacatggtttagcagt 412
                |||||||| ||  |||||||| | |||||||| |||||| ||||||| ||||||||||| 
Sbjct: 34703044 ttcctctcagggttagggattacagaggaagatttccataccatgacttggtttagcagc 34703103

                                                                            
Query: 413      tgggctgtggatggtgaccacagctcccagga---ctctttggaggctgaagacttatct 469
                ||||||||||||||||| |||||||||| |||   |||||| |||| |||||||| ||||
Sbjct: 34703104 tgggctgtggatggtgatcacagctccccggattcctctttagaggttgaagactcatct 34703163



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                            
Query: 290      ggccttgctttagcaacctgctgccaccatctctgtcaatggaagcattatgcaaataaa 349
                ||||||||||| || ||||||||||||||||| || |||||||| || ||||||| ||||
Sbjct: 34702805 ggccttgctttggccacctgctgccaccatctgtgccaatggaatcactatgcaagtaaa 34702864

                 
Query: 350      t 350
                |
Sbjct: 34702865 t 34702865



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                        
Query: 173      tatctagcaattggaaaacatctatgtgggcctgcaacag 212
                ||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 34702562 tatctagcaattggaaagcatctatgtggacctgcaacag 34702601



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 210      cagatatgaccataatgtgctgtcttcatgaac 242
                ||||||||||||| |||||||| ||||||||||
Sbjct: 34702725 cagatatgaccatgatgtgctgccttcatgaac 34702757



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                            
Query: 66       aggctgatcgaagtttaaggcaaaatgagggtgttaaattggagcgtttgagaatagata 125
                ||||||||||||||||  | |||||||| || ||||  ||| ||||||||||||| ||||
Sbjct: 34702260 aggctgatcgaagtttgcgacaaaatgaaggcgttactttgaagcgtttgagaattgata 34702319
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>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete
              sequence
          Length = 164352

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 103/120 (85%), Gaps = 3/120 (2%)
 Strand = Plus / Minus

                                                                          
Query: 353    ttcctctctggactagggattgcggaggaagagttccatgccatgacatggtttagcagt 412
              |||||||| ||  |||||||| | |||||||| |||||| ||||||| ||||||||||| 
Sbjct: 159606 ttcctctcagggttagggattacagaggaagatttccataccatgacttggtttagcagc 159547

                                                                          
Query: 413    tgggctgtggatggtgaccacagctcccagga---ctctttggaggctgaagacttatct 469
              ||||||||||||||||| |||||||||| |||   |||||| |||| |||||||| ||||
Sbjct: 159546 tgggctgtggatggtgatcacagctccccggattcctctttagaggttgaagactcatct 159487



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Minus

                                                                          
Query: 290    ggccttgctttagcaacctgctgccaccatctctgtcaatggaagcattatgcaaataaa 349
              ||||||||||| || ||||||||||||||||| || |||||||| || ||||||| ||||
Sbjct: 159845 ggccttgctttggccacctgctgccaccatctgtgccaatggaatcactatgcaagtaaa 159786

               
Query: 350    t 350
              |
Sbjct: 159785 t 159785



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                      
Query: 173    tatctagcaattggaaaacatctatgtgggcctgcaacag 212
              ||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 160088 tatctagcaattggaaagcatctatgtggacctgcaacag 160049



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                               
Query: 210    cagatatgaccataatgtgctgtcttcatgaac 242
              ||||||||||||| |||||||| ||||||||||
Sbjct: 159925 cagatatgaccatgatgtgctgccttcatgaac 159893



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                          
Query: 66     aggctgatcgaagtttaaggcaaaatgagggtgttaaattggagcgtttgagaatagata 125
              ||||||||||||||||  | |||||||| || ||||  ||| ||||||||||||| ||||
Sbjct: 160390 aggctgatcgaagtttgcgacaaaatgaaggcgttactttgaagcgtttgagaattgata 160331
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>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete
              sequence
          Length = 164236

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 103/120 (85%), Gaps = 3/120 (2%)
 Strand = Plus / Plus

                                                                          
Query: 353    ttcctctctggactagggattgcggaggaagagttccatgccatgacatggtttagcagt 412
              |||||||| ||  |||||||| | |||||||| |||||| ||||||| ||||||||||| 
Sbjct: 160761 ttcctctcagggttagggattacagaggaagatttccataccatgacttggtttagcagc 160820

                                                                          
Query: 413    tgggctgtggatggtgaccacagctcccagga---ctctttggaggctgaagacttatct 469
              ||||||||||||||||| |||||||||| |||   |||||| |||| |||||||| ||||
Sbjct: 160821 tgggctgtggatggtgatcacagctccccggattcctctttagaggttgaagactcatct 160880



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                          
Query: 290    ggccttgctttagcaacctgctgccaccatctctgtcaatggaagcattatgcaaataaa 349
              ||||||||||| || ||||||||||||||||| || |||||||| || ||||||| ||||
Sbjct: 160522 ggccttgctttggccacctgctgccaccatctgtgccaatggaatcactatgcaagtaaa 160581

               
Query: 350    t 350
              |
Sbjct: 160582 t 160582



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                      
Query: 173    tatctagcaattggaaaacatctatgtgggcctgcaacag 212
              ||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 160279 tatctagcaattggaaagcatctatgtggacctgcaacag 160318



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                               
Query: 210    cagatatgaccataatgtgctgtcttcatgaac 242
              ||||||||||||| |||||||| ||||||||||
Sbjct: 160442 cagatatgaccatgatgtgctgccttcatgaac 160474



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                          
Query: 66     aggctgatcgaagtttaaggcaaaatgagggtgttaaattggagcgtttgagaatagata 125
              ||||||||||||||||  | |||||||| || ||||  ||| ||||||||||||| ||||
Sbjct: 159977 aggctgatcgaagtttgcgacaaaatgaaggcgttactttgaagcgtttgagaattgata 160036
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 103/120 (85%), Gaps = 3/120 (2%)
 Strand = Plus / Plus

                                                                            
Query: 353      ttcctctctggactagggattgcggaggaagagttccatgccatgacatggtttagcagt 412
                |||||||| ||  |||||||| | |||||||| |||||| ||||||| ||||||||||| 
Sbjct: 34793116 ttcctctcagggttagggattacagaggaagatttccataccatgacttggtttagcagc 34793175

                                                                            
Query: 413      tgggctgtggatggtgaccacagctcccagga---ctctttggaggctgaagacttatct 469
                ||||||||||||||||| |||||||||| |||   |||||| |||| |||||||| ||||
Sbjct: 34793176 tgggctgtggatggtgatcacagctccccggattcctctttagaggttgaagactcatct 34793235



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                            
Query: 290      ggccttgctttagcaacctgctgccaccatctctgtcaatggaagcattatgcaaataaa 349
                ||||||||||| || ||||||||||||||||| || |||||||| || ||||||| ||||
Sbjct: 34792877 ggccttgctttggccacctgctgccaccatctgtgccaatggaatcactatgcaagtaaa 34792936

                 
Query: 350      t 350
                |
Sbjct: 34792937 t 34792937



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                        
Query: 173      tatctagcaattggaaaacatctatgtgggcctgcaacag 212
                ||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 34792634 tatctagcaattggaaagcatctatgtggacctgcaacag 34792673



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 210      cagatatgaccataatgtgctgtcttcatgaac 242
                ||||||||||||| |||||||| ||||||||||
Sbjct: 34792797 cagatatgaccatgatgtgctgccttcatgaac 34792829



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                            
Query: 66       aggctgatcgaagtttaaggcaaaatgagggtgttaaattggagcgtttgagaatagata 125
                ||||||||||||||||  | |||||||| || ||||  ||| ||||||||||||| ||||
Sbjct: 34792332 aggctgatcgaagtttgcgacaaaatgaaggcgttactttgaagcgtttgagaattgata 34792391
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>ref|NM_116418.2| Arabidopsis thaliana unknown protein AT4G01880 mRNA, complete cds
          Length = 1516

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 107 gagcgtttgagaatagatattgaggatttgaacct 141
           |||||| ||||||| ||||||||||||||||||||
Sbjct: 803 gagcgtatgagaatcgatattgaggatttgaacct 837
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>gb|AC126941.3| Mus musculus BAC clone RP23-133N24 from chromosome 7, complete sequence
          Length = 196621

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 342    caaataaatctttcctctctg 362
              |||||||||||||||||||||
Sbjct: 124716 caaataaatctttcctctctg 124696
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>gb|AC118470.2| Homo sapiens chromosome 1 clone RP11-634B7, complete sequence
          Length = 59105

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 326  caatggaagcattatgcaaat 346
            |||||||||||||||||||||
Sbjct: 6226 caatggaagcattatgcaaat 6246
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>gb|AC130460.2| Homo sapiens chromosome 16 clone CTA-485G10, complete sequence
          Length = 135347

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 437   tcccaggactctttggaggctgaag 461
             |||||| ||||||||||||||||||
Sbjct: 27995 tcccagcactctttggaggctgaag 28019
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>gb|AC084797.5| Homo sapiens chromosome 16 clone RP11-62O3, complete sequence
          Length = 163855

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 437    tcccaggactctttggaggctgaag 461
              |||||| ||||||||||||||||||
Sbjct: 158714 tcccagcactctttggaggctgaag 158738
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>gb|AC144543.4| Mus musculus BAC clone RP23-394E9 from 12, complete sequence
          Length = 219234

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 343    aaataaatctttcctctctgg 363
              |||||||||||||||||||||
Sbjct: 138471 aaataaatctttcctctctgg 138491
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>emb|AL805969.13| Mouse DNA sequence from clone RP23-40L1 on chromosome 4, complete
              sequence
          Length = 252953

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 286    caggggccttgctttagcaac 306
              |||||||||||||||||||||
Sbjct: 121307 caggggccttgctttagcaac 121327
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>ref|NM_153833.1| Homo sapiens H1 histone family, member O, oocyte-specific (H1FOO),
           mRNA
          Length = 1067

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 589 caccgggaggctgctgtggc 608
           ||||||||||||||||||||
Sbjct: 149 caccgggaggctgctgtggc 130
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>gb|AC005576.1| Homo sapiens chromosome 5, P1 clone 918f8 (LBNL H28), complete sequence
          Length = 42987

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   gatattgaggatttgaacct 141
             ||||||||||||||||||||
Sbjct: 27291 gatattgaggatttgaacct 27310
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>gb|BC063091.1| Mus musculus cDNA clone IMAGE:30145107, partial cds
          Length = 3554

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 438  cccaggactctttggaggct 457
            ||||||||||||||||||||
Sbjct: 1461 cccaggactctttggaggct 1480
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>emb|CR942592.2| Xenopus tropicalis finished cDNA, clone TGas068i16
          Length = 3624

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 277  gcaccatctcaggggccttgcttt 300
            |||| |||||||||||||||||||
Sbjct: 1233 gcacaatctcaggggccttgcttt 1210
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>gb|AC127273.3| Mus musculus BAC clone RP24-142K18 from chromosome 6, complete sequence
          Length = 174882

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 343    aaataaatctttcctctctg 362
              ||||||||||||||||||||
Sbjct: 135185 aaataaatctttcctctctg 135204
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>gb|AC104914.9| Mus musculus chromosome 9, clone RP23-108E20, complete sequence
          Length = 260181

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 308  tgctgccaccatctctgtca 327
            ||||||||||||||||||||
Sbjct: 1022 tgctgccaccatctctgtca 1003
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>ref|XM_766372.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_190_76254_75043) partial mRNA
          Length = 1212

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 317 catctctgtcaatggaagca 336
           ||||||||||||||||||||
Sbjct: 477 catctctgtcaatggaagca 458
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>gb|AC146480.2| Danio rerio clone CH211-40O9, complete sequence
          Length = 166906

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    ctgccaccatctctgtcaat 329
              ||||||||||||||||||||
Sbjct: 165045 ctgccaccatctctgtcaat 165026
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>emb|AL590362.12| Human DNA sequence from clone RP11-214G2 on chromosome 9 Contains a CpG
              island, complete sequence
          Length = 154698

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 475    aggcagagaaactgagaagc 494
              ||||||||||||||||||||
Sbjct: 115535 aggcagagaaactgagaagc 115554
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>emb|X73573.1|MMHOXDMRA M.musculus Hoxd-3 mRNA, complete CDS
          Length = 2031

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 438 cccaggactctttggaggct 457
           ||||||||||||||||||||
Sbjct: 147 cccaggactctttggaggct 166
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>gb|U03496.1|AH005407S1 Mus musculus homeobox containing protein (Hox) gene, exon 1
          Length = 2563

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 438  cccaggactctttggaggct 457
            ||||||||||||||||||||
Sbjct: 2039 cccaggactctttggaggct 2058
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>dbj|AK138525.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length
           enriched library, clone:A330050G02 product:homeo box D3,
           full insert sequence
          Length = 2903

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 438 cccaggactctttggaggct 457
           ||||||||||||||||||||
Sbjct: 484 cccaggactctttggaggct 503
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>dbj|AK133705.1| Mus musculus 6 days neonate head cDNA, RIKEN full-length enriched
           library, clone:5430401I10 product:homeo box D3, full
           insert sequence
          Length = 2414

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 438 cccaggactctttggaggct 457
           ||||||||||||||||||||
Sbjct: 351 cccaggactctttggaggct 370
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>ref|XM_678153.1| PREDICTED: Danio rerio similar to CG14127-PA (LOC555601), mRNA
          Length = 1832

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 376  ggaggaagagttccatgcca 395
            ||||||||||||||||||||
Sbjct: 1507 ggaggaagagttccatgcca 1526
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>gb|AC015584.18| Mus musculus, clone RP23-400H17, complete sequence
          Length = 214875

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 438    cccaggactctttggaggct 457
              ||||||||||||||||||||
Sbjct: 180958 cccaggactctttggaggct 180977
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>ref|XM_687358.1| PREDICTED: Danio rerio similar to cadherin-related neuronal receptor
            variable 3 (LOC573332), mRNA
          Length = 2388

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  ctgccaccatctctgtcaat 329
            ||||||||||||||||||||
Sbjct: 1133 ctgccaccatctctgtcaat 1114
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>ref|XM_691548.1| PREDICTED: Danio rerio similar to CG14127-PA (LOC568229), mRNA
          Length = 1832

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 376  ggaggaagagttccatgcca 395
            ||||||||||||||||||||
Sbjct: 1507 ggaggaagagttccatgcca 1526
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>gb|AC026754.5| Homo sapiens chromosome 5 clone P1_356B7, complete sequence
          Length = 71438

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   gatattgaggatttgaacct 141
             ||||||||||||||||||||
Sbjct: 29932 gatattgaggatttgaacct 29913
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>gb|AY158091.1| Homo sapiens oocyte-specific histone H1 mRNA, complete cds
          Length = 1067

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 589 caccgggaggctgctgtggc 608
           ||||||||||||||||||||
Sbjct: 149 caccgggaggctgctgtggc 130
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>dbj|AK087919.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
           full-length enriched library, clone:E330040K20
           product:unclassifiable, full insert sequence
          Length = 2095

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 343 aaataaatctttcctctctg 362
           ||||||||||||||||||||
Sbjct: 785 aaataaatctttcctctctg 804
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>ref|NM_001008484.1| Danio rerio protocadherin 2 alpha b 3 (pcdh2ab3), mRNA
          Length = 3366

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  ctgccaccatctctgtcaat 329
            ||||||||||||||||||||
Sbjct: 1133 ctgccaccatctctgtcaat 1114
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>dbj|AK048729.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:C230027A03
           product:unclassifiable, full insert sequence
          Length = 3099

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 338 tatgcaaataaatctttcct 357
           ||||||||||||||||||||
Sbjct: 260 tatgcaaataaatctttcct 279
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>gb|AC148670.1| Macaca mulatta Major Histocompatibility Complex BAC MMU063G23, complete
              sequence
          Length = 189655

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 426    gtgaccacagctcccaggac 445
              ||||||||||||||||||||
Sbjct: 152682 gtgaccacagctcccaggac 152663
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>gb|AC080007.26| Homo sapiens 3 BAC RP11-529F4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 168551

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 589   caccgggaggctgctgtggc 608
             ||||||||||||||||||||
Sbjct: 19352 caccgggaggctgctgtggc 19371
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>ref|NM_001008483.1| Danio rerio protocadherin 2 alpha b 5 (pcdh2ab5), mRNA
          Length = 3372

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  ctgccaccatctctgtcaat 329
            ||||||||||||||||||||
Sbjct: 1139 ctgccaccatctctgtcaat 1120
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>ref|XM_213633.3| PREDICTED: Rattus norvegicus homeo box D3 (Hoxd3), mRNA
          Length = 2313

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 438 cccaggactctttggaggct 457
           ||||||||||||||||||||
Sbjct: 243 cccaggactctttggaggct 262
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>dbj|AB075933.1| Danio rerio mRNA for cadherin-related neuronal receptor variable 5,
            complete cds
          Length = 3372

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  ctgccaccatctctgtcaat 329
            ||||||||||||||||||||
Sbjct: 1139 ctgccaccatctctgtcaat 1120
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>dbj|AB075932.1| Danio rerio mRNA for cadherin-related neuronal receptor variable 4,
            complete cds
          Length = 3366

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  ctgccaccatctctgtcaat 329
            ||||||||||||||||||||
Sbjct: 1133 ctgccaccatctctgtcaat 1114
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>dbj|AB075931.1| Danio rerio mRNA for cadherin-related neuronal receptor variable 3,
            complete cds
          Length = 3366

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  ctgccaccatctctgtcaat 329
            ||||||||||||||||||||
Sbjct: 1133 ctgccaccatctctgtcaat 1114
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>dbj|AB075928.1| Danio rerio CNR family (zCNRv1, zCNRv2, zCNRv3, zCNRv4, zCNRv5, zCNRv6,
             zCNRv7, zCNRv8, zCNRv9, zCNRv10, zCNRv11,zCNRv12, zCNRc)
             genes, complete cds
          Length = 116542

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   ctgccaccatctctgtcaat 329
             ||||||||||||||||||||
Sbjct: 24728 ctgccaccatctctgtcaat 24709



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   ctgccaccatctctgtcaat 329
             ||||||||||||||||||||
Sbjct: 20933 ctgccaccatctctgtcaat 20914



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   ctgccaccatctctgtcaat 329
             ||||||||||||||||||||
Sbjct: 17264 ctgccaccatctctgtcaat 17245
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>emb|AL929558.13| Zebrafish DNA sequence from clone CH211-159N7, complete sequence
          Length = 170597

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    ctgccaccatctctgtcaat 329
              ||||||||||||||||||||
Sbjct: 168434 ctgccaccatctctgtcaat 168415



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 310    ctgccaccatctctgtcaat 329
              ||||||||||||||||||||
Sbjct: 164632 ctgccaccatctctgtcaat 164613
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>emb|AL928733.14| Mouse DNA sequence from clone RP23-190O13 on chromosome 2, complete
             sequence
          Length = 110511

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 438   cccaggactctttggaggct 457
             ||||||||||||||||||||
Sbjct: 11148 cccaggactctttggaggct 11167
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>gb|AC124762.4| Mus musculus BAC clone RP23-155A10 from 6, complete sequence
          Length = 199207

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 343    aaataaatctttcctctctg 362
              ||||||||||||||||||||
Sbjct: 169627 aaataaatctttcctctctg 169608
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>emb|BX255921.2| Zebrafish DNA sequence from clone CH211-236K19 in linkage group 5,
             complete sequence
          Length = 142918

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 221   ataatgtgctgtcttcatgaacaa 244
             ||||||| ||||||||||||||||
Sbjct: 60770 ataatgttctgtcttcatgaacaa 60793
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>gb|U56401.1|MMU56401 Mus musculus Hoxd3 gene, complete cds
          Length = 6158

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 438 cccaggactctttggaggct 457
           ||||||||||||||||||||
Sbjct: 316 cccaggactctttggaggct 335
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>gb|U56400.1|MMU56400 Mus musculus Hoxd3 mRNA, complete cds
          Length = 1913

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 438 cccaggactctttggaggct 457
           ||||||||||||||||||||
Sbjct: 159 cccaggactctttggaggct 178
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>ref|NM_010468.1| Mus musculus homeo box D3 (Hoxd3), mRNA
          Length = 1913

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 438 cccaggactctttggaggct 457
           ||||||||||||||||||||
Sbjct: 159 cccaggactctttggaggct 178
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>gb|AC141637.3| Mus musculus BAC clone RP23-424D5 from 9, complete sequence
          Length = 183859

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 308    tgctgccaccatctctgtca 327
              ||||||||||||||||||||
Sbjct: 127683 tgctgccaccatctctgtca 127664
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>emb|AL845492.10| Mouse DNA sequence from clone RP23-222P7 on chromosome 2, complete
              sequence
          Length = 225684

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 338    tatgcaaataaatctttcct 357
              ||||||||||||||||||||
Sbjct: 126958 tatgcaaataaatctttcct 126939
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>emb|AL671011.9| Mouse DNA sequence from clone RP23-95O23 on chromosome 4, complete
              sequence
          Length = 226950

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 316    ccatctctgtcaatggaagcatta 339
              |||||||||||| |||||||||||
Sbjct: 123817 ccatctctgtcactggaagcatta 123840
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>emb|X73572.1|MMHOXDGNA M.musculus Hoxd-3 gene, complete CDS
          Length = 3896

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 438 cccaggactctttggaggct 457
           ||||||||||||||||||||
Sbjct: 245 cccaggactctttggaggct 264
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>emb|AL611945.21| Mouse DNA sequence from clone RP23-48A7 on chromosome 4, complete
              sequence
          Length = 163383

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 342    caaataaatctttcctctct 361
              ||||||||||||||||||||
Sbjct: 143651 caaataaatctttcctctct 143670


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,509,898
Number of Sequences: 3902068
Number of extensions: 5509898
Number of successful extensions: 99573
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99406
Number of HSP's gapped (non-prelim): 166
length of query: 608
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 585
effective length of database: 17,143,297,704
effective search space: 10028829156840
effective search space used: 10028829156840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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