ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah63n10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HSF3_ARATH (O81821) Heat shock factor protein 3 (HSF 3) (Heat sh... 57 3e-08
2HSF2_ARATH (Q9SCW5) Heat shock factor protein 2 (HSF 2) (Heat sh... 57 5e-08
3HSF8_LYCPE (P41153) Heat shock factor protein HSF8 (Heat shock t... 52 1e-06
4HSF8_LYCES (Q40152) Heat shock factor protein HSF8 (Heat shock t... 51 2e-06
5ARMX6_HUMAN (Q7L4S7) Protein ARMCX6 31 2.7
6RP21_HUMAN (Q9H633) Ribonuclease P protein subunit p21 (EC 3.1.2... 30 6.0
7CAPP_COREF (Q8RQL3) Phosphoenolpyruvate carboxylase (EC 4.1.1.31... 30 7.8
8NUHM_NEUCR (P40915) NADH-ubiquinone oxidoreductase 24 kDa subuni... 30 7.8

>HSF3_ARATH (O81821) Heat shock factor protein 3 (HSF 3) (Heat shock|
           transcription factor 3) (HSTF 3)
          Length = 481

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 33/70 (47%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
 Frame = +3

Query: 123 IDDTQKLPGIIDSFWEQFLCAS-PLSVDNDEVDSGLLDTRE---AQEENGWTRTE-NLAN 287
           ++   KLPGI D FWEQF     P   D D++ SG ++  +    QE N WTR E  +  
Sbjct: 407 LEGVPKLPGIQDPFWEQFFSVELPAIADTDDILSGSVENNDLVLEQEPNEWTRNEQQMKY 466

Query: 288 LTEQMGLLSS 317
           LTEQMGLLSS
Sbjct: 467 LTEQMGLLSS 476



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>HSF2_ARATH (Q9SCW5) Heat shock factor protein 2 (HSF 2) (Heat shock|
           transcription factor 2) (HSTF 2)
          Length = 468

 Score = 57.0 bits (136), Expect = 5e-08
 Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 8/97 (8%)
 Frame = +3

Query: 54  ECIFPLPEGSDDSVPMDPIDTDEIDDTQKLPGIIDSFWEQFLCASPLSVDNDEVDSG--- 224
           EC+ P+    D ++ ++    +E+     LP + DSFWEQF+  SP+  + DE+ SG   
Sbjct: 373 ECLDPIMAVLDGALELEADTLNEL-----LPEVQDSFWEQFIGESPVIGETDELISGSVE 427

Query: 225 ---LLDTREAQE--ENGWTRTENLANLTEQMGLLSSN 320
              +L+  E Q    N W++ + + +LTEQMGLL+S+
Sbjct: 428 NELILEQLELQSTLSNVWSKNQQMNHLTEQMGLLTSD 464



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>HSF8_LYCPE (P41153) Heat shock factor protein HSF8 (Heat shock transcription|
           factor 8) (HSTF 8) (Heat stress transcription factor)
          Length = 527

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 27/62 (43%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
 Frame = +3

Query: 123 IDDTQKLPGIIDSFWEQFLCASPLSVDNDEVDSGLLDTREAQEE-NGWTRTENLANLTEQ 299
           +D+ Q+ P + D FWE+FL  SP S D   +D  + +T E + + NGW +T+N+ +LTEQ
Sbjct: 457 LDEIQEFPSVGDPFWEKFL-QSPSSPDA-AMDDDISNTSETKPQINGWDKTQNMEHLTEQ 514

Query: 300 MG 305
           MG
Sbjct: 515 MG 516



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>HSF8_LYCES (Q40152) Heat shock factor protein HSF8 (Heat shock transcription|
           factor 8) (HSTF 8) (Heat stress transcription factor)
          Length = 527

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
 Frame = +3

Query: 123 IDDTQKLPGIIDSFWEQFLCASPLSVDNDEVDSGLLDTREAQEE-NGWTRTENLANLTEQ 299
           +D+ ++ P + D FWE+FL  SP S D   +D  + +T E + + NGW +T+N+ +LTEQ
Sbjct: 457 LDEIEEFPSVGDPFWEKFL-QSPCSPDA-AMDDDISNTSETKPQINGWDKTQNMEHLTEQ 514

Query: 300 MG 305
           MG
Sbjct: 515 MG 516



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>ARMX6_HUMAN (Q7L4S7) Protein ARMCX6|
          Length = 300

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +3

Query: 57  CIFPLPEGSDDSVPMDPIDTDEIDDTQKLPGIIDSFWEQF-LCASPLSVDNDEVDSGLLD 233
           C++ L  G DDS  ++    +E DD Q+L       W  F   A P + D D  + G   
Sbjct: 23  CVYKLTIGRDDSEKLEEEGEEEWDDDQELDEEEPDIWFDFETMARPWTEDGDWTEPGAPG 82

Query: 234 TREAQEENG 260
             E +   G
Sbjct: 83  GTEDRPSGG 91



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>RP21_HUMAN (Q9H633) Ribonuclease P protein subunit p21 (EC 3.1.26.5) (RNaseP|
           protein p21) (Ribonucleoprotein V)
          Length = 154

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 10/101 (9%)
 Frame = +1

Query: 10  EELIFL*RTMQCLVLSVYSPYLKAVMTLFPWTPSTLMRSMTLR---SFRASLIPSGSSSF 180
           + L FL +   C++     P  +A+   + +T  T+ + + LR   S + +L    SS  
Sbjct: 12  QRLNFLYQAAHCVLAQ--DPENQALARFYCYTERTIAKRLVLRRDPSVKRTLCRGCSSLL 69

Query: 181 VPALYLLTTTR-------SIQVCWTHGKRKRRMDGPGPRTW 282
           VP L      R       ++Q C T  + +R ++ PG   W
Sbjct: 70  VPGLTCTQRQRRCRGQRWTVQTCLTCQRSQRFLNDPGHLLW 110



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>CAPP_COREF (Q8RQL3) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)|
           (PEPC)
          Length = 919

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 72  PEGSDDSVPMDPIDTDEIDDTQKLPGIIDSFWEQFLCASPLSVDNDEVDSGLLDTREAQE 251
           P GS D +P+     + IDD Q+  GI++  W+  L  + L    D V   +L   ++ +
Sbjct: 525 PTGSVDVIPL----FETIDDLQRGAGILEELWDIDLYRNYLE-QRDNVQEVMLGYSDSNK 579

Query: 252 ENGW 263
           + G+
Sbjct: 580 DGGY 583



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>NUHM_NEUCR (P40915) NADH-ubiquinone oxidoreductase 24 kDa subunit,|
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
          Length = 263

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -3

Query: 480 RYKKIGILPRRFVDRHFTVQHDCVTINYMGFITRIDPRAP*ESVDVSKYLTLYGSTTAGP 301
           +YKK  ++P   + +    QH   +I+ M  + R+    P    +V+ + T+Y  T  G 
Sbjct: 81  QYKKAAVMPLLDLGQR---QHGFCSISVMNEVARLLEMPPMRVYEVASFYTMYNRTPVGK 137

Query: 300 F 298
           F
Sbjct: 138 F 138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,928,072
Number of Sequences: 219361
Number of extensions: 2177801
Number of successful extensions: 5865
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5855
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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