>ref|XM_470452.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1920

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                        
Query: 125  cgatgacactcagaagcttccgggcatcattgattccttctgggagcagttcctttgtgc 184
            ||||||||| ||||| ||||| |  ||||||||||| |||||||| ||||||||    ||
Sbjct: 1314 cgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggc 1373

                                                    
Query: 185  cagccctctatctgttgacaacgacgaggtcgattcaggt 224
             ||||||||||||||||| || || || ||||||||||||
Sbjct: 1374 tagccctctatctgttgataatgatgaagtcgattcaggt 1413

>gb|AC120506.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006O08
             map S15179S, complete sequence
          Length = 166005

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                         
Query: 125   cgatgacactcagaagcttccgggcatcattgattccttctgggagcagttcctttgtgc 184
             ||||||||| ||||| ||||| |  ||||||||||| |||||||| ||||||||    ||
Sbjct: 85843 cgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggc 85902

                                                     
Query: 185   cagccctctatctgttgacaacgacgaggtcgattcaggt 224
              ||||||||||||||||| || || || ||||||||||||
Sbjct: 85903 tagccctctatctgttgataatgatgaagtcgattcaggt 85942

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                            
Query: 125      cgatgacactcagaagcttccgggcatcattgattccttctgggagcagttcctttgtgc 184
                ||||||||| ||||| ||||| |  ||||||||||| |||||||| ||||||||    ||
Sbjct: 35688065 cgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggc 35688124

                                                        
Query: 185      cagccctctatctgttgacaacgacgaggtcgattcaggt 224
                 ||||||||||||||||| || || || ||||||||||||
Sbjct: 35688125 tagccctctatctgttgataatgatgaagtcgattcaggt 35688164

>gb|AY344485.1| Oryza sativa (japonica cultivar-group) heat shock factor RHSF3 mRNA,
            complete cds
          Length = 1742

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                        
Query: 125  cgatgacactcagaagcttccgggcatcattgattccttctgggagcagttcctttgtgc 184
            ||||||||| ||||| ||||| |  ||||||||||| |||||||| ||||||||    ||
Sbjct: 1413 cgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggc 1472

                                                    
Query: 185  cagccctctatctgttgacaacgacgaggtcgattcaggt 224
             ||||||||||||||||| || || || ||||||||||||
Sbjct: 1473 tagccctctatctgttgataatgatgaagtcgattcaggt 1512

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                            
Query: 125      cgatgacactcagaagcttccgggcatcattgattccttctgggagcagttcctttgtgc 184
                ||||||||| ||||| ||||| |  ||||||||||| |||||||| ||||||||    ||
Sbjct: 35778138 cgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggc 35778197

                                                        
Query: 185      cagccctctatctgttgacaacgacgaggtcgattcaggt 224
                 ||||||||||||||||| || || || ||||||||||||
Sbjct: 35778198 tagccctctatctgttgataatgatgaagtcgattcaggt 35778237

>dbj|AK106118.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-E07, full
            insert sequence
          Length = 1635

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                        
Query: 125  cgatgacactcagaagcttccgggcatcattgattccttctgggagcagttcctttgtgc 184
            ||||||||| ||||| ||||| |  ||||||||||| |||||||| ||||||||    ||
Sbjct: 1348 cgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggc 1407

                                                    
Query: 185  cagccctctatctgttgacaacgacgaggtcgattcaggt 224
             ||||||||||||||||| || || || ||||||||||||
Sbjct: 1408 tagccctctatctgttgataatgatgaagtcgattcaggt 1447

>dbj|AK100430.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088F14, full
            insert sequence
          Length = 2051

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                        
Query: 125  cgatgacactcagaagcttccgggcatcattgattccttctgggagcagttcctttgtgc 184
            ||||||||| ||||| ||||| |  ||||||||||| |||||||| ||||||||    ||
Sbjct: 1439 cgatgacacccagaaacttcctgctatcattgattctttctgggaacagttcctggtggc 1498

                                                    
Query: 185  cagccctctatctgttgacaacgacgaggtcgattcaggt 224
             ||||||||||||||||| || || || ||||||||||||
Sbjct: 1499 tagccctctatctgttgataatgatgaagtcgattcaggt 1538

>gb|AY107458.1| Zea mays PCO102265 mRNA sequence
          Length = 504

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 132 actcagaagcttccgggcatcattgattccttctgggagcagttcct 178
           |||||||  ||||| |||||||| || ||||||||||||||||||||
Sbjct: 47  actcagagccttccaggcatcatcgactccttctgggagcagttcct 93

>gb|DQ367297.1| HIV-1 isolate KNH1243 from Kenya nef protein (nef) gene, partial
           cds
          Length = 609

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 239 ggaagcgcaagaggagaatgg 259
           |||||||||||||||||||||
Sbjct: 168 ggaagcgcaagaggagaatgg 188

>emb|AL359741.9| Human DNA sequence from clone RP11-161P17 on chromosome 13 Contains a
             novel pseudogene, complete sequence
          Length = 139877

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 517   tgttgtgtttctgctgtactt 537
             |||||||||||||||||||||
Sbjct: 70237 tgttgtgtttctgctgtactt 70217

>gb|AC124097.6| Mus musculus chromosome 15, clone RP23-431H12, complete sequence
          Length = 203639

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 519   ttgtgtttctgctgtacttgtgtg 542
             ||||||||||||||||| ||||||
Sbjct: 82141 ttgtgtttctgctgtacatgtgtg 82164

>gb|AC152952.1| Mus musculus 6 BAC RP23-86B3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 187484

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 515   tgtgttgtgtttctgctgta 534
             ||||||||||||||||||||
Sbjct: 40342 tgtgttgtgtttctgctgta 40323

>gb|AC118704.17| Mus musculus chromosome 13, clone RP24-114K21, complete sequence
          Length = 197574

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     tgcaatgcctggtcctgagt 57
              ||||||||||||||||||||
Sbjct: 117526 tgcaatgcctggtcctgagt 117507

>gb|AC145724.1| Pan troglodytes BAC clone RP43-22E12 from 7, complete sequence
          Length = 152426

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    tgaaggcagtgatgactctg 93
             ||||||||||||||||||||
Sbjct: 49176 tgaaggcagtgatgactctg 49195

>emb|AL035687.13|HS142O9 Human DNA sequence from clone RP1-142O9 on chromosome 6p11.1-12.3
              Contains a eukaryotic translation elongation factor 1 alpha
              1 (EEF1A1) pseudogene and a zinc finger (ZNF216)
              pseudogene, complete sequence
          Length = 131546

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 168    gagcagttcctttgtgccag 187
              ||||||||||||||||||||
Sbjct: 130739 gagcagttcctttgtgccag 130758

>emb|AL772234.5| Mouse DNA sequence from clone RP23-413M22 on chromosome 11, complete
              sequence
          Length = 193528

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 173    gttcctttgtgccagccctc 192
              ||||||||||||||||||||
Sbjct: 152178 gttcctttgtgccagccctc 152159

>gb|AC104793.4| Homo sapiens BAC clone RP11-234O6 from 4, complete sequence
          Length = 133244

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 158   ttccttctgggagcagttcctttgtgcc 185
             |||||||||| | |||||||||||||||
Sbjct: 76740 ttccttctggtaacagttcctttgtgcc 76713

>gb|AC091736.2| Homo sapiens chromosome 7 clone RP11-644N4, complete sequence
          Length = 156539

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     tgaaggcagtgatgactctg 93
              ||||||||||||||||||||
Sbjct: 132102 tgaaggcagtgatgactctg 132083

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 519     ttgtgtttctgctgtacttgtgtg 542
               ||||||||||||| ||||||||||
Sbjct: 6655839 ttgtgtttctgctctacttgtgtg 6655862

>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0027A02
          Length = 140402

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 519   ttgtgtttctgctgtacttgtgtg 542
             ||||||||||||| ||||||||||
Sbjct: 90214 ttgtgtttctgctctacttgtgtg 90237

>gb|AC174083.2| Mus musculus BAC clone RP23-25B17 from chromosome 15, complete sequence
          Length = 211435

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 519    ttgtgtttctgctgtacttgtgtg 542
              ||||||||||||||||| ||||||
Sbjct: 177360 ttgtgtttctgctgtacatgtgtg 177383


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,325,111
Number of Sequences: 3902068
Number of extensions: 4325111
Number of successful extensions: 73121
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73033
Number of HSP's gapped (non-prelim): 81
length of query: 632
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 609
effective length of database: 17,143,297,704
effective search space: 10440268301736
effective search space used: 10440268301736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)