ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah63n05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GP153_MOUSE (Q8K0Z9) Probable G-protein coupled receptor 153 (G-... 30 3.9
2NCBP1_HUMAN (Q09161) Nuclear cap-binding protein subunit 1 (80 k... 30 6.6
3AGLA_RHIME (Q9Z3R8) Probable alpha-glucosidase (EC 3.2.1.20) 30 6.6
4ANFC3_FUGRU (Q805D4) C-type natriuretic peptide 3 precursor 29 8.6
5ZN342_HUMAN (Q8WUU4) Zinc finger protein 342 29 8.6
6DMP1_MOUSE (O55188) Dentin matrix acidic phosphoprotein 1 precur... 29 8.6

>GP153_MOUSE (Q8K0Z9) Probable G-protein coupled receptor 153 (G-protein coupled|
           receptor PGR1)
          Length = 631

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 22/81 (27%), Positives = 34/81 (41%)
 Frame = +3

Query: 30  PASRPAAQRLFVAVAAPSRWRSIEPHRALRRSEGSRVLTMVRRCSSAGDSRAAGDGSLSS 209
           PA+R +A+   V      R +  +  RA R   G    ++       G   AAG GS+SS
Sbjct: 549 PAARDSAEPAEVPTPPGGRTQRSQGRRAARTHVGPLQSSLSASWGEPGGLHAAGCGSISS 608

Query: 210 FCIIEGPETIQDFVQMQSQEI 272
           F  +  P     +V + S  +
Sbjct: 609 F--LSSPSESSGYVTLHSDSL 627



to top

>NCBP1_HUMAN (Q09161) Nuclear cap-binding protein subunit 1 (80 kDa nuclear|
           cap-binding protein) (NCBP 80 kDa subunit) (CBP80)
          Length = 790

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 467 QIELLHCLW*RIRQKRNGRWHLRHLI 390
           Q E L CLW +I++ +  RW  RH++
Sbjct: 225 QEEYLDCLWAQIQKLKKDRWQERHIL 250



to top

>AGLA_RHIME (Q9Z3R8) Probable alpha-glucosidase (EC 3.2.1.20)|
          Length = 551

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 461 LFDIILFHIWDNHFWWLDSPNT*TEIRAWWYL 556
           + D++L H  D H W+++S ++ +  +A WY+
Sbjct: 108 MIDLVLSHTSDRHPWFVESRSSRSNAKADWYV 139



to top

>ANFC3_FUGRU (Q805D4) C-type natriuretic peptide 3 precursor|
          Length = 158

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 13/48 (27%), Positives = 28/48 (58%)
 Frame = +3

Query: 222 EGPETIQDFVQMQSQEIQDNIKSRRSKIFLLMEEVRRLRVQQRIRTAE 365
           E  E +Q+ VQ Q +E+Q+ ++ ++ ++    EEV+  + +Q+    E
Sbjct: 42  EMQEEVQEKVQEQQEEVQEKVQEQQEEVQEQQEEVQEQQEEQQEEVQE 89



to top

>ZN342_HUMAN (Q8WUU4) Zinc finger protein 342|
          Length = 475

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
 Frame = +1

Query: 262 HRRFKTTSRVGAAKYSF*WKRSDDYGCSSESEL-----LKADVPAVKKMRCRRCHLPF-- 420
           HRR  T  R    ++        +Y C+  S+L     +    P   +  C  CH+PF  
Sbjct: 404 HRRSHTGERPYTCEFC-------NYACAQSSKLNRHRRMHGMTPGSTRFECPHCHVPFGL 456

Query: 421 RFCLIRHQRQ 450
           R  L +H RQ
Sbjct: 457 RATLDKHLRQ 466



to top

>DMP1_MOUSE (O55188) Dentin matrix acidic phosphoprotein 1 precursor (Dentin|
           matrix protein 1) (DMP-1) (AG1)
          Length = 503

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 233 DNTRLRSDAITGDSRQHQESAQQNIPFNGRGQTTTG 340
           D+   R DA  GDS QH ES +Q +     GQ++ G
Sbjct: 167 DDAHSRPDA--GDSAQHSESEEQRVGGGSEGQSSHG 200


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,165,279
Number of Sequences: 219361
Number of extensions: 1379838
Number of successful extensions: 4246
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4244
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top