No.
Definition
Score (bits)
E Value
1 dbj|AK067439.1| Oryza sativa (japonica cultivar-group) cDNA clon...
476
e-131
2 dbj|AK073974.1| Oryza sativa (japonica cultivar-group) cDNA clon...
468
e-128
3 gb|AY110955.1| Zea mays CL31997_1 mRNA sequence
260
5e-66
4 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
151
3e-33
5 dbj|AP004156.3| Oryza sativa (japonica cultivar-group) genomic D...
151
3e-33
6 dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic D...
151
3e-33
7 ref|NM_120695.3| Arabidopsis thaliana unknown protein AT5G06130 ...
50
0.008
8 ref|NM_180700.2| Arabidopsis thaliana unknown protein AT5G06130 ...
50
0.008
9 gb|AY133750.1| Arabidopsis thaliana clone U19942 unknown protein...
50
0.008
10 gb|AY072147.1| Arabidopsis thaliana unknown protein (At5g06130) ...
50
0.008
11 emb|BX832671.1|CNS0A24F Arabidopsis thaliana Full-length cDNA Co...
50
0.008
12 emb|BX830149.1|CNS0A1DX Arabidopsis thaliana Full-length cDNA Co...
50
0.008
13 dbj|AP002030.1| Arabidopsis thaliana genomic DNA, chromosome 5, ...
50
0.008
14 gb|AY228175.1|AY228174S2 Streptomyces murayamaensis putative ary...
46
0.13
15 gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
44
0.51
16 emb|AL627442.10| Human DNA sequence from clone RP11-296E3 on chr...
44
0.51
17 emb|AL590110.11| Human DNA sequence from clone RP11-254O21 on ch...
44
0.51
18 emb|AL954380.9| Mouse DNA sequence from clone RP23-156O9 on chro...
42
2.0
19 ref|XM_469764.1| Oryza sativa (japonica cultivar-group), mRNA
40
7.9
20 ref|XM_473111.1| Oryza sativa (japonica cultivar-group), predic...
40
7.9
21 gb|AY753208.1| Grapevine leafroll-associated virus 3 coat protei...
40
7.9
22 gb|AC115865.9| Mus musculus chromosome 3, clone RP24-314I8, comp...
40
7.9
23 gb|AY742905.1| Epichloe festucae strain Fl1 Rua retrotransposon,...
40
7.9
24 gb|AY742903.1| Neotyphodium lolii strain Lp19 Rua retrotransposo...
40
7.9
25 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
40
7.9
26 ref|XM_539803.2| PREDICTED: Canis familiaris similar to Calcium/...
40
7.9
27 gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genom...
40
7.9
28 gb|BC098557.1| Danio rerio zgc:110445, mRNA (cDNA clone MGC:1104...
40
7.9
29 emb|Z98050.1|HS451B15 Human DNA sequence from clone RP3-451B15 o...
40
7.9
30 ref|NM_001030235.1| Danio rerio zgc:110445 (zgc:110445), mRNA
40
7.9
31 emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4,...
40
7.9
32 emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4,...
40
7.9
33 gb|AC046144.15| Homo sapiens 3 BAC RP11-628J14 (Roswell Park Can...
40
7.9
34 dbj|AK160462.1| Mus musculus 10 day old male pancreas cDNA, RIKE...
40
7.9
35 dbj|AK161743.1| Mus musculus adult male thymus cDNA, RIKEN full-...
40
7.9
36 gb|AC008774.7| Homo sapiens chromosome 5 clone CTD-2018M7, compl...
40
7.9
37 gb|AC034245.5| Homo sapiens chromosome 5 clone RP11-155L15, comp...
40
7.9
38 gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome...
40
7.9
39 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...
40
7.9
40 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
40
7.9
41 gb|AC013471.7| Homo sapiens BAC clone RP11-489A14 from 2, comple...
40
7.9
42 gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
40
7.9
43 dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility co...
40
7.9
44 dbj|AK121383.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
7.9
45 dbj|AK103688.1| Oryza sativa (japonica cultivar-group) cDNA clon...
40
7.9
46 gb|AC102108.12| Mus musculus chromosome 3, clone RP23-100J23, co...
40
7.9
>dbj|AP008208.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 151 bits (76), Expect = 3e-33
Identities = 109/120 (90%)
Strand = Plus / Minus
Query: 206 cagtttttgcataattgaaggcccagagacaatacaagacttcgttcagatgcaatcaca 265
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 19736278 cagtttttgcataattgaaggcccagagactatacaagactttgttcaaatgcaatcaca 19736219
Query: 266 ggagattcaagacaacatcaagagtcggcgcagcaaaatattccttttaatggaagaggt 325
||||||||||||||||||| ||| || || | |||||| |||||||| |||||||||||
Sbjct: 19736218 agagattcaagacaacatcaggagccgccgtaacaaaattttccttttgatggaagaggt 19736159
Score = 121 bits (61), Expect = 3e-24
Identities = 79/85 (92%)
Strand = Plus / Minus
Query: 437 gtcaccaaagacaatgaagcaactctatttgacatcattctctttcatatctgggataat 496
|||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 19735852 gtcaccgaagacaatgaaacaactctatttgacatcattctcattcataactgggataat 19735793
Query: 497 catttttggtggcttgatagcccca 521
| ||||||| |||||||||||||||
Sbjct: 19735792 cttttttggaggcttgatagcccca 19735768
Score = 95.6 bits (48), Expect = 2e-16
Identities = 99/116 (85%)
Strand = Plus / Minus
Query: 322 aggtcagacgactacgggtgcagcagcgaatcagaactgctgaaagcagatgttccagca 381
|||| |||||| | |||||||||||||||||||||||| ||||||||||| || | ||||
Sbjct: 19736059 aggttagacgattgcgggtgcagcagcgaatcagaacttctgaaagcagaggtgcaagca 19736000
Query: 382 gtgaagaaaatgagatgccggagatgccatctaccattccgtttttgccttatacg 437
||||||||| ||| ||||| || || || |||| ||||| ||||||||| |||||
Sbjct: 19735999 gtgaagaaagtgaaatgcctgaaatcccgtctagtattccctttttgcctaatacg 19735944
Score = 71.9 bits (36), Expect = 2e-09
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 525 cttgaactgaaattagggcttggtggtacctcttatgaagattttata 572
||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 19735683 cttgagctgaaattagggctaggtggtacatcttatgaagattttata 19735636
Score = 56.0 bits (28), Expect = 1e-04
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 157 ggtgctcttccgccggcgactccagggcggccggagacggcagcctatccag 208
||||||| ||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct: 19736841 ggtgctcctccgccggcgagcccagggcggccggcgacggtggcctatccag 19736790
>dbj|AP004156.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1112_G07
Length = 149119
Score = 151 bits (76), Expect = 3e-33
Identities = 109/120 (90%)
Strand = Plus / Minus
Query: 206 cagtttttgcataattgaaggcccagagacaatacaagacttcgttcagatgcaatcaca 265
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 44829 cagtttttgcataattgaaggcccagagactatacaagactttgttcaaatgcaatcaca 44770
Query: 266 ggagattcaagacaacatcaagagtcggcgcagcaaaatattccttttaatggaagaggt 325
||||||||||||||||||| ||| || || | |||||| |||||||| |||||||||||
Sbjct: 44769 agagattcaagacaacatcaggagccgccgtaacaaaattttccttttgatggaagaggt 44710
Score = 121 bits (61), Expect = 3e-24
Identities = 79/85 (92%)
Strand = Plus / Minus
Query: 437 gtcaccaaagacaatgaagcaactctatttgacatcattctctttcatatctgggataat 496
|||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 44403 gtcaccgaagacaatgaaacaactctatttgacatcattctcattcataactgggataat 44344
Query: 497 catttttggtggcttgatagcccca 521
| ||||||| |||||||||||||||
Sbjct: 44343 cttttttggaggcttgatagcccca 44319
Score = 95.6 bits (48), Expect = 2e-16
Identities = 99/116 (85%)
Strand = Plus / Minus
Query: 322 aggtcagacgactacgggtgcagcagcgaatcagaactgctgaaagcagatgttccagca 381
|||| |||||| | |||||||||||||||||||||||| ||||||||||| || | ||||
Sbjct: 44610 aggttagacgattgcgggtgcagcagcgaatcagaacttctgaaagcagaggtgcaagca 44551
Query: 382 gtgaagaaaatgagatgccggagatgccatctaccattccgtttttgccttatacg 437
||||||||| ||| ||||| || || || |||| ||||| ||||||||| |||||
Sbjct: 44550 gtgaagaaagtgaaatgcctgaaatcccgtctagtattccctttttgcctaatacg 44495
Score = 71.9 bits (36), Expect = 2e-09
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 525 cttgaactgaaattagggcttggtggtacctcttatgaagattttata 572
||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 44234 cttgagctgaaattagggctaggtggtacatcttatgaagattttata 44187
Score = 56.0 bits (28), Expect = 1e-04
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 157 ggtgctcttccgccggcgactccagggcggccggagacggcagcctatccag 208
||||||| ||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct: 45392 ggtgctcctccgccggcgagcccagggcggccggcgacggtggcctatccag 45341
>dbj|AP005798.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:B1136H02
Length = 145086
Score = 151 bits (76), Expect = 3e-33
Identities = 109/120 (90%)
Strand = Plus / Minus
Query: 206 cagtttttgcataattgaaggcccagagacaatacaagacttcgttcagatgcaatcaca 265
|||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 93036 cagtttttgcataattgaaggcccagagactatacaagactttgttcaaatgcaatcaca 92977
Query: 266 ggagattcaagacaacatcaagagtcggcgcagcaaaatattccttttaatggaagaggt 325
||||||||||||||||||| ||| || || | |||||| |||||||| |||||||||||
Sbjct: 92976 agagattcaagacaacatcaggagccgccgtaacaaaattttccttttgatggaagaggt 92917
Score = 121 bits (61), Expect = 3e-24
Identities = 79/85 (92%)
Strand = Plus / Minus
Query: 437 gtcaccaaagacaatgaagcaactctatttgacatcattctctttcatatctgggataat 496
|||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 92610 gtcaccgaagacaatgaaacaactctatttgacatcattctcattcataactgggataat 92551
Query: 497 catttttggtggcttgatagcccca 521
| ||||||| |||||||||||||||
Sbjct: 92550 cttttttggaggcttgatagcccca 92526
Score = 95.6 bits (48), Expect = 2e-16
Identities = 99/116 (85%)
Strand = Plus / Minus
Query: 322 aggtcagacgactacgggtgcagcagcgaatcagaactgctgaaagcagatgttccagca 381
|||| |||||| | |||||||||||||||||||||||| ||||||||||| || | ||||
Sbjct: 92817 aggttagacgattgcgggtgcagcagcgaatcagaacttctgaaagcagaggtgcaagca 92758
Query: 382 gtgaagaaaatgagatgccggagatgccatctaccattccgtttttgccttatacg 437
||||||||| ||| ||||| || || || |||| ||||| ||||||||| |||||
Sbjct: 92757 gtgaagaaagtgaaatgcctgaaatcccgtctagtattccctttttgcctaatacg 92702
Score = 71.9 bits (36), Expect = 2e-09
Identities = 45/48 (93%)
Strand = Plus / Minus
Query: 525 cttgaactgaaattagggcttggtggtacctcttatgaagattttata 572
||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 92441 cttgagctgaaattagggctaggtggtacatcttatgaagattttata 92394
Score = 56.0 bits (28), Expect = 1e-04
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 157 ggtgctcttccgccggcgactccagggcggccggagacggcagcctatccag 208
||||||| ||||||||||| ||||||||||||| ||||| ||||||||||
Sbjct: 93599 ggtgctcctccgccggcgagcccagggcggccggcgacggtggcctatccag 93548
>gb|AY228175.1 |AY228174S2 Streptomyces murayamaensis putative arylamine N-acetyltransferase,
putative hydrolase, putative transmembrane efflux protein,
putative transcriptional regulator, putative ribonuclease
HII, putative ATP-dependent DNA helicase, putative
bifunctional enzyme deaminase/reductase genes, complete
cds; kinamycin biosynthetic gene cluster, partial sequence
and unknown genes
Length = 34564
Score = 46.1 bits (23), Expect = 0.13
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 cgacgccgccagcgtcaaggcct 44
|||||||||||||||||||||||
Sbjct: 24622 cgacgccgccagcgtcaaggcct 24644
>gb|AY742905.1 | Epichloe festucae strain Fl1 Rua retrotransposon, partial sequence;
geranylgeranyl diphosphate synthase (ltmG), FAD dependent
monooxygenase (ltmM), and P450 monooxygenase (ltmK) genes,
complete cds; and pks pseudogene, complete sequence
Length = 16207
Score = 40.1 bits (20), Expect = 7.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 17 ctcgacgacgccgccagcgt 36
||||||||||||||||||||
Sbjct: 15853 ctcgacgacgccgccagcgt 15834
>gb|AY742903.1 | Neotyphodium lolii strain Lp19 Rua retrotransposon, partial sequence;
geranylgeranyl diphosphate synthase (ltmG), FAD dependent
monooxygenase (ltmM), and P450 monooxygenase (ltmK) genes,
complete cds; Tahi retrotransposon and Rua
retrotransposon, complete sequence; and pks pseudogene,
complete sequence
Length = 39942
Score = 40.1 bits (20), Expect = 7.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 17 ctcgacgacgccgccagcgt 36
||||||||||||||||||||
Sbjct: 33487 ctcgacgacgccgccagcgt 33468
>gb|AC102108.12 | Mus musculus chromosome 3, clone RP23-100J23, complete sequence
Length = 216506
Score = 40.1 bits (20), Expect = 7.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 475 tctctttcatatctgggata 494
||||||||||||||||||||
Sbjct: 25354 tctctttcatatctgggata 25373
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,977,812
Number of Sequences: 3902068
Number of extensions: 4977812
Number of successful extensions: 98033
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97645
Number of HSP's gapped (non-prelim): 387
length of query: 582
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 559
effective length of database: 17,143,297,704
effective search space: 9583103416536
effective search space used: 9583103416536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)