ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah63n05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK067439.1| Oryza sativa (japonica cultivar-group) cDNA clon... 476 e-131
2dbj|AK073974.1| Oryza sativa (japonica cultivar-group) cDNA clon... 468 e-128
3gb|AY110955.1| Zea mays CL31997_1 mRNA sequence 260 5e-66
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
5dbj|AP004156.3| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
6dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
7ref|NM_120695.3| Arabidopsis thaliana unknown protein AT5G06130 ... 50 0.008
8ref|NM_180700.2| Arabidopsis thaliana unknown protein AT5G06130 ... 50 0.008
9gb|AY133750.1| Arabidopsis thaliana clone U19942 unknown protein... 50 0.008
10gb|AY072147.1| Arabidopsis thaliana unknown protein (At5g06130) ... 50 0.008
11emb|BX832671.1|CNS0A24F Arabidopsis thaliana Full-length cDNA Co... 50 0.008
12emb|BX830149.1|CNS0A1DX Arabidopsis thaliana Full-length cDNA Co... 50 0.008
13dbj|AP002030.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 50 0.008
14gb|AY228175.1|AY228174S2 Streptomyces murayamaensis putative ary... 46 0.13
15gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome 44 0.51
16emb|AL627442.10| Human DNA sequence from clone RP11-296E3 on chr... 44 0.51
17emb|AL590110.11| Human DNA sequence from clone RP11-254O21 on ch... 44 0.51
18emb|AL954380.9| Mouse DNA sequence from clone RP23-156O9 on chro... 42 2.0
19ref|XM_469764.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.9
20ref|XM_473111.1| Oryza sativa (japonica cultivar-group), predic... 40 7.9
21gb|AY753208.1| Grapevine leafroll-associated virus 3 coat protei... 40 7.9
22gb|AC115865.9| Mus musculus chromosome 3, clone RP24-314I8, comp... 40 7.9
23gb|AY742905.1| Epichloe festucae strain Fl1 Rua retrotransposon,... 40 7.9
24gb|AY742903.1| Neotyphodium lolii strain Lp19 Rua retrotransposo... 40 7.9
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.9
26ref|XM_539803.2| PREDICTED: Canis familiaris similar to Calcium/... 40 7.9
27gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genom... 40 7.9
28gb|BC098557.1| Danio rerio zgc:110445, mRNA (cDNA clone MGC:1104... 40 7.9
29emb|Z98050.1|HS451B15 Human DNA sequence from clone RP3-451B15 o... 40 7.9
30ref|NM_001030235.1| Danio rerio zgc:110445 (zgc:110445), mRNA 40 7.9
31emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4,... 40 7.9
32emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4,... 40 7.9
33gb|AC046144.15| Homo sapiens 3 BAC RP11-628J14 (Roswell Park Can... 40 7.9
34dbj|AK160462.1| Mus musculus 10 day old male pancreas cDNA, RIKE... 40 7.9
35dbj|AK161743.1| Mus musculus adult male thymus cDNA, RIKEN full-... 40 7.9
36gb|AC008774.7| Homo sapiens chromosome 5 clone CTD-2018M7, compl... 40 7.9
37gb|AC034245.5| Homo sapiens chromosome 5 clone RP11-155L15, comp... 40 7.9
38gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.9
39dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
40dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
41gb|AC013471.7| Homo sapiens BAC clone RP11-489A14 from 2, comple... 40 7.9
42gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 7.9
43dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility co... 40 7.9
44dbj|AK121383.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.9
45dbj|AK103688.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.9
46gb|AC102108.12| Mus musculus chromosome 3, clone RP23-100J23, co... 40 7.9

>dbj|AK067439.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100E03, full
           insert sequence
          Length = 1166

 Score =  476 bits (240), Expect = e-131
 Identities = 372/416 (89%)
 Strand = Plus / Plus

                                                                       
Query: 157 ggtgctcttccgccggcgactccagggcggccggagacggcagcctatccagtttttgca 216
           ||||||| |||||||||||  ||||||||||||| |||||  ||||||||||||||||||
Sbjct: 185 ggtgctcctccgccggcgagcccagggcggccggcgacggtggcctatccagtttttgca 244

                                                                       
Query: 217 taattgaaggcccagagacaatacaagacttcgttcagatgcaatcacaggagattcaag 276
           ||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||
Sbjct: 245 taattgaaggcccagagactatacaagactttgttcaaatgcaatcacaagagattcaag 304

                                                                       
Query: 277 acaacatcaagagtcggcgcagcaaaatattccttttaatggaagaggtcagacgactac 336
           ||||||||| ||| || || | |||||| |||||||| ||||||||||| |||||| | |
Sbjct: 305 acaacatcaggagccgccgtaacaaaattttccttttgatggaagaggttagacgattgc 364

                                                                       
Query: 337 gggtgcagcagcgaatcagaactgctgaaagcagatgttccagcagtgaagaaaatgaga 396
           ||||||||||||||||||||||| ||||||||||| || | ||||||||||||| ||| |
Sbjct: 365 gggtgcagcagcgaatcagaacttctgaaagcagaggtgcaagcagtgaagaaagtgaaa 424

                                                                       
Query: 397 tgccggagatgccatctaccattccgtttttgccttatacgtcaccaaagacaatgaagc 456
           |||| || || || ||||  ||||| ||||||||| |||||||||| ||||||||||| |
Sbjct: 425 tgcctgaaatcccgtctagtattccctttttgcctaatacgtcaccgaagacaatgaaac 484

                                                                       
Query: 457 aactctatttgacatcattctctttcatatctgggataatcatttttggtggcttgatag 516
           |||||||||||||||||||||| |||||| ||||||||||| ||||||| ||||||||||
Sbjct: 485 aactctatttgacatcattctcattcataactgggataatcttttttggaggcttgatag 544

                                                                   
Query: 517 ccccaatacttgaactgaaattagggcttggtggtacctcttatgaagattttata 572
           ||||| ||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 545 ccccagtacttgagctgaaattagggctaggtggtacatcttatgaagattttata 600



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>dbj|AK073974.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073K01, full
           insert sequence
          Length = 1359

 Score =  468 bits (236), Expect = e-128
 Identities = 371/416 (89%)
 Strand = Plus / Plus

                                                                       
Query: 157 ggtgctcttccgccggcgactccagggcggccggagacggcagcctatccagtttttgca 216
           ||||||| |||||||||||  ||||||||||||| |||||  ||||||||||||||||||
Sbjct: 226 ggtgctcctccgccggcgagcccagggcggccggcgacggtggcctatccagtttttgca 285

                                                                       
Query: 217 taattgaaggcccagagacaatacaagacttcgttcagatgcaatcacaggagattcaag 276
           ||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||
Sbjct: 286 taattgaaggcccagagactatacaagactttgttcaaatgcaatcacaagagattcaag 345

                                                                       
Query: 277 acaacatcaagagtcggcgcagcaaaatattccttttaatggaagaggtcagacgactac 336
           ||||||||| ||| || || | |||||| |||||||| ||||||||||| |||||| | |
Sbjct: 346 acaacatcaggagccgccgtaacaaaattttccttttgatggaagaggttagacgattgc 405

                                                                       
Query: 337 gggtgcagcagcgaatcagaactgctgaaagcagatgttccagcagtgaagaaaatgaga 396
           ||||||||||||||||||||||| ||||||||||| || | ||||||||||||| ||| |
Sbjct: 406 gggtgcagcagcgaatcagaacttctgaaagcagaggtgcaagcagtgaagaaagtgaaa 465

                                                                       
Query: 397 tgccggagatgccatctaccattccgtttttgccttatacgtcaccaaagacaatgaagc 456
           |||| || || |  ||||  ||||| ||||||||| |||||||||| ||||||||||| |
Sbjct: 466 tgcctgaaatccagtctagtattccctttttgcctaatacgtcaccgaagacaatgaaac 525

                                                                       
Query: 457 aactctatttgacatcattctctttcatatctgggataatcatttttggtggcttgatag 516
           |||||||||||||||||||||| |||||| ||||||||||| ||||||| ||||||||||
Sbjct: 526 aactctatttgacatcattctcattcataactgggataatcttttttggaggcttgatag 585

                                                                   
Query: 517 ccccaatacttgaactgaaattagggcttggtggtacctcttatgaagattttata 572
           ||||| ||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 586 ccccagtacttgagctgaaattagggctaggtggtacatcttatgaagattttata 641



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>gb|AY110955.1| Zea mays CL31997_1 mRNA sequence
          Length = 855

 Score =  260 bits (131), Expect = 5e-66
 Identities = 270/318 (84%)
 Strand = Plus / Minus

                                                                       
Query: 255 atgcaatcacaggagattcaagacaacatcaagagtcggcgcagcaaaatattcctttta 314
           |||||||| ||||||||| |||||||||||| ||| || |||| |||||| |||||| | 
Sbjct: 852 atgcaatcgcaggagattgaagacaacatcatgagccgacgcaacaaaattttccttctg 793

                                                                       
Query: 315 atggaagaggtcagacgactacgggtgcagcagcgaatcagaactgctgaaagcagatgt 374
           ||||||||||| |||||  | || ||||||||||| ||| ||||| ||||||||| |  |
Sbjct: 792 atggaagaggttagacggttgcgagtgcagcagcgtatccgaacttctgaaagcaaagat 733

                                                                       
Query: 375 tccagcagtgaagaaaatgagatgccggagatgccatctaccattccgtttttgccttat 434
            ||| || ||||| |||||| ||||| ||||| ||||| || ||||| ||| ||||| ||
Sbjct: 732 gccaacactgaaggaaatgaaatgcctgagattccatcaactattccatttatgcctgat 673

                                                                       
Query: 435 acgtcaccaaagacaatgaagcaactctatttgacatcattctctttcatatctgggata 494
            ||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||||||||
Sbjct: 672 gcgtcaccaaagactatgaagcaactctatatgacatcgttctctgtcatatctgggata 613

                                                                       
Query: 495 atcatttttggtggcttgatagccccaatacttgaactgaaattagggcttggtggtacc 554
           ||||     || ||||||||||||||| |||||||||||||| ||||||| ||||| || 
Sbjct: 612 atcannnnnggaggcttgatagccccagtacttgaactgaaactagggctgggtggcaca 553

                             
Query: 555 tcttatgaagattttata 572
           ||||||||||||||||||
Sbjct: 552 tcttatgaagattttata 535



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  151 bits (76), Expect = 3e-33
 Identities = 109/120 (90%)
 Strand = Plus / Minus

                                                                            
Query: 206      cagtttttgcataattgaaggcccagagacaatacaagacttcgttcagatgcaatcaca 265
                |||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 19736278 cagtttttgcataattgaaggcccagagactatacaagactttgttcaaatgcaatcaca 19736219

                                                                            
Query: 266      ggagattcaagacaacatcaagagtcggcgcagcaaaatattccttttaatggaagaggt 325
                 ||||||||||||||||||| ||| || || | |||||| |||||||| |||||||||||
Sbjct: 19736218 agagattcaagacaacatcaggagccgccgtaacaaaattttccttttgatggaagaggt 19736159



 Score =  121 bits (61), Expect = 3e-24
 Identities = 79/85 (92%)
 Strand = Plus / Minus

                                                                            
Query: 437      gtcaccaaagacaatgaagcaactctatttgacatcattctctttcatatctgggataat 496
                |||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 19735852 gtcaccgaagacaatgaaacaactctatttgacatcattctcattcataactgggataat 19735793

                                         
Query: 497      catttttggtggcttgatagcccca 521
                | ||||||| |||||||||||||||
Sbjct: 19735792 cttttttggaggcttgatagcccca 19735768



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 99/116 (85%)
 Strand = Plus / Minus

                                                                            
Query: 322      aggtcagacgactacgggtgcagcagcgaatcagaactgctgaaagcagatgttccagca 381
                |||| |||||| | |||||||||||||||||||||||| ||||||||||| || | ||||
Sbjct: 19736059 aggttagacgattgcgggtgcagcagcgaatcagaacttctgaaagcagaggtgcaagca 19736000

                                                                        
Query: 382      gtgaagaaaatgagatgccggagatgccatctaccattccgtttttgccttatacg 437
                ||||||||| ||| ||||| || || || ||||  ||||| ||||||||| |||||
Sbjct: 19735999 gtgaagaaagtgaaatgcctgaaatcccgtctagtattccctttttgcctaatacg 19735944



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                                
Query: 525      cttgaactgaaattagggcttggtggtacctcttatgaagattttata 572
                ||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 19735683 cttgagctgaaattagggctaggtggtacatcttatgaagattttata 19735636



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                    
Query: 157      ggtgctcttccgccggcgactccagggcggccggagacggcagcctatccag 208
                ||||||| |||||||||||  ||||||||||||| |||||  ||||||||||
Sbjct: 19736841 ggtgctcctccgccggcgagcccagggcggccggcgacggtggcctatccag 19736790



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>dbj|AP004156.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1112_G07
          Length = 149119

 Score =  151 bits (76), Expect = 3e-33
 Identities = 109/120 (90%)
 Strand = Plus / Minus

                                                                         
Query: 206   cagtttttgcataattgaaggcccagagacaatacaagacttcgttcagatgcaatcaca 265
             |||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 44829 cagtttttgcataattgaaggcccagagactatacaagactttgttcaaatgcaatcaca 44770

                                                                         
Query: 266   ggagattcaagacaacatcaagagtcggcgcagcaaaatattccttttaatggaagaggt 325
              ||||||||||||||||||| ||| || || | |||||| |||||||| |||||||||||
Sbjct: 44769 agagattcaagacaacatcaggagccgccgtaacaaaattttccttttgatggaagaggt 44710



 Score =  121 bits (61), Expect = 3e-24
 Identities = 79/85 (92%)
 Strand = Plus / Minus

                                                                         
Query: 437   gtcaccaaagacaatgaagcaactctatttgacatcattctctttcatatctgggataat 496
             |||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 44403 gtcaccgaagacaatgaaacaactctatttgacatcattctcattcataactgggataat 44344

                                      
Query: 497   catttttggtggcttgatagcccca 521
             | ||||||| |||||||||||||||
Sbjct: 44343 cttttttggaggcttgatagcccca 44319



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 99/116 (85%)
 Strand = Plus / Minus

                                                                         
Query: 322   aggtcagacgactacgggtgcagcagcgaatcagaactgctgaaagcagatgttccagca 381
             |||| |||||| | |||||||||||||||||||||||| ||||||||||| || | ||||
Sbjct: 44610 aggttagacgattgcgggtgcagcagcgaatcagaacttctgaaagcagaggtgcaagca 44551

                                                                     
Query: 382   gtgaagaaaatgagatgccggagatgccatctaccattccgtttttgccttatacg 437
             ||||||||| ||| ||||| || || || ||||  ||||| ||||||||| |||||
Sbjct: 44550 gtgaagaaagtgaaatgcctgaaatcccgtctagtattccctttttgcctaatacg 44495



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                             
Query: 525   cttgaactgaaattagggcttggtggtacctcttatgaagattttata 572
             ||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 44234 cttgagctgaaattagggctaggtggtacatcttatgaagattttata 44187



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                 
Query: 157   ggtgctcttccgccggcgactccagggcggccggagacggcagcctatccag 208
             ||||||| |||||||||||  ||||||||||||| |||||  ||||||||||
Sbjct: 45392 ggtgctcctccgccggcgagcccagggcggccggcgacggtggcctatccag 45341



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>dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1136H02
          Length = 145086

 Score =  151 bits (76), Expect = 3e-33
 Identities = 109/120 (90%)
 Strand = Plus / Minus

                                                                         
Query: 206   cagtttttgcataattgaaggcccagagacaatacaagacttcgttcagatgcaatcaca 265
             |||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 93036 cagtttttgcataattgaaggcccagagactatacaagactttgttcaaatgcaatcaca 92977

                                                                         
Query: 266   ggagattcaagacaacatcaagagtcggcgcagcaaaatattccttttaatggaagaggt 325
              ||||||||||||||||||| ||| || || | |||||| |||||||| |||||||||||
Sbjct: 92976 agagattcaagacaacatcaggagccgccgtaacaaaattttccttttgatggaagaggt 92917



 Score =  121 bits (61), Expect = 3e-24
 Identities = 79/85 (92%)
 Strand = Plus / Minus

                                                                         
Query: 437   gtcaccaaagacaatgaagcaactctatttgacatcattctctttcatatctgggataat 496
             |||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 92610 gtcaccgaagacaatgaaacaactctatttgacatcattctcattcataactgggataat 92551

                                      
Query: 497   catttttggtggcttgatagcccca 521
             | ||||||| |||||||||||||||
Sbjct: 92550 cttttttggaggcttgatagcccca 92526



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 99/116 (85%)
 Strand = Plus / Minus

                                                                         
Query: 322   aggtcagacgactacgggtgcagcagcgaatcagaactgctgaaagcagatgttccagca 381
             |||| |||||| | |||||||||||||||||||||||| ||||||||||| || | ||||
Sbjct: 92817 aggttagacgattgcgggtgcagcagcgaatcagaacttctgaaagcagaggtgcaagca 92758

                                                                     
Query: 382   gtgaagaaaatgagatgccggagatgccatctaccattccgtttttgccttatacg 437
             ||||||||| ||| ||||| || || || ||||  ||||| ||||||||| |||||
Sbjct: 92757 gtgaagaaagtgaaatgcctgaaatcccgtctagtattccctttttgcctaatacg 92702



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                             
Query: 525   cttgaactgaaattagggcttggtggtacctcttatgaagattttata 572
             ||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 92441 cttgagctgaaattagggctaggtggtacatcttatgaagattttata 92394



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                 
Query: 157   ggtgctcttccgccggcgactccagggcggccggagacggcagcctatccag 208
             ||||||| |||||||||||  ||||||||||||| |||||  ||||||||||
Sbjct: 93599 ggtgctcctccgccggcgagcccagggcggccggcgacggtggcctatccag 93548



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>ref|NM_120695.3| Arabidopsis thaliana unknown protein AT5G06130 transcript variant
           AT5G06130.2 mRNA, complete cds
          Length = 1362

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 528 gaactgaaattagggcttggtggtacctcttatgaagattttata 572
           ||||||||  |||| ||||| || |||||||||||||||||||||
Sbjct: 641 gaactgaaggtaggacttggaggaacctcttatgaagattttata 685



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>ref|NM_180700.2| Arabidopsis thaliana unknown protein AT5G06130 transcript variant
           AT5G06130.1 mRNA, complete cds
          Length = 1576

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 528 gaactgaaattagggcttggtggtacctcttatgaagattttata 572
           ||||||||  |||| ||||| || |||||||||||||||||||||
Sbjct: 855 gaactgaaggtaggacttggaggaacctcttatgaagattttata 899



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>gb|AY133750.1| Arabidopsis thaliana clone U19942 unknown protein (At5g06130) mRNA,
           complete cds
          Length = 979

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 528 gaactgaaattagggcttggtggtacctcttatgaagattttata 572
           ||||||||  |||| ||||| || |||||||||||||||||||||
Sbjct: 532 gaactgaaggtaggacttggaggaacctcttatgaagattttata 576



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>gb|AY072147.1| Arabidopsis thaliana unknown protein (At5g06130) mRNA, complete cds
          Length = 1224

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 528 gaactgaaattagggcttggtggtacctcttatgaagattttata 572
           ||||||||  |||| ||||| || |||||||||||||||||||||
Sbjct: 573 gaactgaaggtaggacttggaggaacctcttatgaagattttata 617



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>emb|BX832671.1|CNS0A24F Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH89ZE01 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1349

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 528 gaactgaaattagggcttggtggtacctcttatgaagattttata 572
           ||||||||  |||| ||||| || |||||||||||||||||||||
Sbjct: 729 gaactgaaggtaggacttggaggaacctcttatgaagattttata 773



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>emb|BX830149.1|CNS0A1DX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB62ZF12 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1347

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                        
Query: 528 gaactgaaattagggcttggtggtacctcttatgaagattttata 572
           ||||||||  |||| ||||| || |||||||||||||||||||||
Sbjct: 767 gaactgaaggtaggacttggaggaacctcttatgaagattttata 811



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>dbj|AP002030.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4
          Length = 34867

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                          
Query: 528   gaactgaaattagggcttggtggtacctcttatgaagattttata 572
             ||||||||  |||| ||||| || |||||||||||||||||||||
Sbjct: 33133 gaactgaaggtaggacttggaggaacctcttatgaagattttata 33089



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>gb|AY228175.1|AY228174S2 Streptomyces murayamaensis putative arylamine N-acetyltransferase,
             putative hydrolase, putative transmembrane efflux protein,
             putative transcriptional regulator, putative ribonuclease
             HII, putative ATP-dependent DNA helicase, putative
             bifunctional enzyme deaminase/reductase genes, complete
             cds; kinamycin biosynthetic gene cluster, partial sequence
             and unknown genes
          Length = 34564

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 22    cgacgccgccagcgtcaaggcct 44
             |||||||||||||||||||||||
Sbjct: 24622 cgacgccgccagcgtcaaggcct 24644



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>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
          Length = 2650701

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 378     agcagtgaagaaaatgagatgc 399
               ||||||||||||||||||||||
Sbjct: 2180276 agcagtgaagaaaatgagatgc 2180255



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>emb|AL627442.10| Human DNA sequence from clone RP11-296E3 on chromosome 1 Contains the 3'
              end of the SNX7 gene for sorting nexin7, complete sequence
          Length = 131815

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 519    ccaatacttgaactgaaattag 540
              ||||||||||||||||||||||
Sbjct: 130088 ccaatacttgaactgaaattag 130109



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>emb|AL590110.11| Human DNA sequence from clone RP11-254O21 on chromosome 1 Contains
           the 3' end of a novel gene, complete sequence
          Length = 128843

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 519 ccaatacttgaactgaaattag 540
           ||||||||||||||||||||||
Sbjct: 273 ccaatacttgaactgaaattag 294



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>emb|AL954380.9| Mouse DNA sequence from clone RP23-156O9 on chromosome 2, complete
             sequence
          Length = 105996

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 552   acctcttatgaagattttata 572
             |||||||||||||||||||||
Sbjct: 39257 acctcttatgaagattttata 39237



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>ref|XM_469764.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1533

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 8   cgccgcgtcctcgacgacgccgcc 31
           ||||||| ||||||||||||||||
Sbjct: 351 cgccgcgccctcgacgacgccgcc 374



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>ref|XM_473111.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1107

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 3   tgcctcgccgcgtcctcgacgacg 26
           |||||||||||||||||| |||||
Sbjct: 467 tgcctcgccgcgtcctcgccgacg 444



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>gb|AY753208.1| Grapevine leafroll-associated virus 3 coat protein mRNA, complete
           cds
          Length = 942

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 526 ttgaactgaaattagggctt 545
           ||||||||||||||||||||
Sbjct: 8   ttgaactgaaattagggctt 27



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>gb|AC115865.9| Mus musculus chromosome 3, clone RP24-314I8, complete sequence
          Length = 200362

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 475    tctctttcatatctgggata 494
              ||||||||||||||||||||
Sbjct: 162551 tctctttcatatctgggata 162570



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>gb|AY742905.1| Epichloe festucae strain Fl1 Rua retrotransposon, partial sequence;
             geranylgeranyl diphosphate synthase (ltmG), FAD dependent
             monooxygenase (ltmM), and P450 monooxygenase (ltmK) genes,
             complete cds; and pks pseudogene, complete sequence
          Length = 16207

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    ctcgacgacgccgccagcgt 36
             ||||||||||||||||||||
Sbjct: 15853 ctcgacgacgccgccagcgt 15834



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>gb|AY742903.1| Neotyphodium lolii strain Lp19 Rua retrotransposon, partial sequence;
             geranylgeranyl diphosphate synthase (ltmG), FAD dependent
             monooxygenase (ltmM), and P450 monooxygenase (ltmK) genes,
             complete cds; Tahi retrotransposon and Rua
             retrotransposon, complete sequence; and pks pseudogene,
             complete sequence
          Length = 39942

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    ctcgacgacgccgccagcgt 36
             ||||||||||||||||||||
Sbjct: 33487 ctcgacgacgccgccagcgt 33468



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 8        cgccgcgtcctcgacgacgccgcc 31
                ||||||| ||||||||||||||||
Sbjct: 30614273 cgccgcgccctcgacgacgccgcc 30614250



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 297     agcaaaatattccttttaat 316
               ||||||||||||||||||||
Sbjct: 2902570 agcaaaatattccttttaat 2902589



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>ref|XM_539803.2| PREDICTED: Canis familiaris similar to Calcium/calmodulin-dependent
           protein kinase type II beta chain (CaM-kinase II beta
           chain) (CaM kinase II beta subunit) (CaMK-II beta
           subunit) (LOC482687), mRNA
          Length = 772

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 173 cgactccagggcggccggag 192
           ||||||||||||||||||||
Sbjct: 144 cgactccagggcggccggag 125



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>gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genomic sequence, complete
              sequence
          Length = 157970

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 8      cgccgcgtcctcgacgacgccgcc 31
              ||||||| ||||||||||||||||
Sbjct: 148119 cgccgcgccctcgacgacgccgcc 148142



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>gb|BC098557.1| Danio rerio zgc:110445, mRNA (cDNA clone MGC:110445 IMAGE:7228980),
            complete cds
          Length = 2996

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 253  agatgcaatcacaggagattcaag 276
            ||||||||| ||||||||||||||
Sbjct: 1339 agatgcaattacaggagattcaag 1362



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>emb|Z98050.1|HS451B15 Human DNA sequence from clone RP3-451B15 on chromosome 6p24 Contains the
              3' end of the HIVEP1 gene for human immunodeficiency virus
              type I enhancer-binding protein 1, the EDN1 gene for
              endothelin 1 (ET1) and a SMT3 suppressor of mif two 3
              homolog 1 (yeast) (SMT3H1) pseudogene, complete sequence
          Length = 186510

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 441    ccaaagacaatgaagcaact 460
              ||||||||||||||||||||
Sbjct: 116882 ccaaagacaatgaagcaact 116901



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>ref|NM_001030235.1| Danio rerio zgc:110445 (zgc:110445), mRNA
          Length = 2996

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 253  agatgcaatcacaggagattcaag 276
            ||||||||| ||||||||||||||
Sbjct: 1339 agatgcaattacaggagattcaag 1362



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>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11,
              complete sequence
          Length = 143582

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 3      tgcctcgccgcgtcctcgacgacg 26
              |||||||||||||||||| |||||
Sbjct: 126898 tgcctcgccgcgtcctcgccgacg 126875



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>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24,
             complete sequence
          Length = 164577

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 3     tgcctcgccgcgtcctcgacgacg 26
             |||||||||||||||||| |||||
Sbjct: 69518 tgcctcgccgcgtcctcgccgacg 69495



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>gb|AC046144.15| Homo sapiens 3 BAC RP11-628J14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 188840

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   cagcaaaatattccttttaa 315
             ||||||||||||||||||||
Sbjct: 39666 cagcaaaatattccttttaa 39685



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>dbj|AK160462.1| Mus musculus 10 day old male pancreas cDNA, RIKEN full-length
           enriched library, clone:1810062K14
           product:unclassifiable, full insert sequence
          Length = 1135

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 372 tgttccagcagtgaagaaaa 391
           ||||||||||||||||||||
Sbjct: 585 tgttccagcagtgaagaaaa 604



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>dbj|AK161743.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
            library, clone:5830440H21 product:SH3 domain protein 1B,
            full insert sequence
          Length = 5256

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 372  tgttccagcagtgaagaaaa 391
            ||||||||||||||||||||
Sbjct: 4878 tgttccagcagtgaagaaaa 4897



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>gb|AC008774.7| Homo sapiens chromosome 5 clone CTD-2018M7, complete sequence
          Length = 128781

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 458   actctatttgacatcattct 477
             ||||||||||||||||||||
Sbjct: 92691 actctatttgacatcattct 92710



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>gb|AC034245.5| Homo sapiens chromosome 5 clone RP11-155L15, complete sequence
          Length = 158094

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 458    actctatttgacatcattct 477
              ||||||||||||||||||||
Sbjct: 109222 actctatttgacatcattct 109203



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>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0016I15, complete sequence
          Length = 166282

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   agcaaaatattccttttaat 316
             ||||||||||||||||||||
Sbjct: 40057 agcaaaatattccttttaat 40076



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 3        tgcctcgccgcgtcctcgacgacg 26
                |||||||||||||||||| |||||
Sbjct: 25342959 tgcctcgccgcgtcctcgccgacg 25342936



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 8        cgccgcgtcctcgacgacgccgcc 31
                ||||||| ||||||||||||||||
Sbjct: 30705695 cgccgcgccctcgacgacgccgcc 30705672



 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 297     agcaaaatattccttttaat 316
               ||||||||||||||||||||
Sbjct: 2902681 agcaaaatattccttttaat 2902700



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>gb|AC013471.7| Homo sapiens BAC clone RP11-489A14 from 2, complete sequence
          Length = 145040

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 463    atttgacatcattctctttc 482
              ||||||||||||||||||||
Sbjct: 119201 atttgacatcattctctttc 119220



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 17      ctcgacgacgccgccagcgtcaag 40
               |||||||||||||||||| |||||
Sbjct: 4772979 ctcgacgacgccgccagcttcaag 4772956



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>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region
          Length = 1750601

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 265    aggagattcaagacaacatc 284
              ||||||||||||||||||||
Sbjct: 671652 aggagattcaagacaacatc 671633



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>dbj|AK121383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127I10, full
           insert sequence
          Length = 1929

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 3   tgcctcgccgcgtcctcgacgacg 26
           |||||||||||||||||| |||||
Sbjct: 967 tgcctcgccgcgtcctcgccgacg 944



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>dbj|AK103688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136G12, full
            insert sequence
          Length = 2703

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 8    cgccgcgtcctcgacgacgccgcc 31
            ||||||| ||||||||||||||||
Sbjct: 1562 cgccgcgccctcgacgacgccgcc 1585



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>gb|AC102108.12| Mus musculus chromosome 3, clone RP23-100J23, complete sequence
          Length = 216506

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 475   tctctttcatatctgggata 494
             ||||||||||||||||||||
Sbjct: 25354 tctctttcatatctgggata 25373


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,977,812
Number of Sequences: 3902068
Number of extensions: 4977812
Number of successful extensions: 98033
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97645
Number of HSP's gapped (non-prelim): 387
length of query: 582
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 559
effective length of database: 17,143,297,704
effective search space: 9583103416536
effective search space used: 9583103416536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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