ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63m23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_102014.1| Arabidopsis thaliana ATP binding / ubiquitin-protein ligase/ zinc ion binding AT1G21650 mRNA, complete cds Length = 4740 Score = 127 bits (64), Expect = 4e-26 Identities = 229/284 (80%) Strand = Plus / Plus Query: 216 gtgctccacgatgggtgcattgccgagatgaagactggcgaggggaagacactcgtgtcc 275 ||||| || ||||| | |||||| ||||||||||| || || ||||| ||||| || || Sbjct: 2416 gtgcttcatgatggatccattgcggagatgaagacaggtgaagggaaaacactagtttct 2475 Query: 276 accttggcagcttatctcaatgcactgactggggatggagttcatgtggtgactgtaaat 335 ||||| || || ||||| |||||| | ||||| || || ||||||||||| ||||| ||| Sbjct: 2476 accttagctgcatatcttaatgcattaactggtgagggcgttcatgtggttactgtgaat 2535 Query: 336 gattatttggcacagcgagatgctgaatggatgggccgcgttcatcgttttcttggtcta 395 ||||| |||||||||| ||||||||||||||||| || ||||| || || | || || Sbjct: 2536 gattacctggcacagcgtgatgctgaatggatgggtcgtgttcaccgcttcttaggcctt 2595 Query: 396 actgtcggtctaattcaggcgggcatgaagtctgatgagaggagagccaactatatgtgt 455 | || ||||| |||||| || ||||| |||| ||||| | | |||||||| ||| Sbjct: 2596 tcagttggtctcattcagagagggatgaaagctgaagagagaaaattcaactatagctgt 2655 Query: 456 gacattacatacactaataactcggagcttggatttgattatct 499 || || |||||||| ||||||||||||||||||||||||||||| Sbjct: 2656 gatataacatacaccaataactcggagcttggatttgattatct 2699
>gb|AC145322.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0096N19, complete sequence Length = 178671 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Minus Query: 324 gtgactgtaaatgattatttggcacagcgagatgctgaatggatgggccgcgttcatcgt 383 ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| Sbjct: 98076 gtgactgtaaatgattatttggcacagcgagatgctgaatggatgggtcgtgtgcatcgt 98017 Query: 384 tttcttggtctaactgtcggtctaattcagg 414 ||||||||||| | || ||||||||||||| Sbjct: 98016 tttcttggtctttccgtgggtctaattcagg 97986 Score = 99.6 bits (50), Expect = 9e-18 Identities = 68/74 (91%) Strand = Plus / Minus Query: 225 gatgggtgcattgccgagatgaagactggcgaggggaagacactcgtgtccaccttggca 284 ||||||||||| || |||||||||||||||||||||||||| || ||||| |||||||| Sbjct: 98627 gatgggtgcatcgcggagatgaagactggcgaggggaagacgcttgtgtctaccttggcg 98568 Query: 285 gcttatctcaatgc 298 |||||||||||||| Sbjct: 98567 gcttatctcaatgc 98554 Score = 93.7 bits (47), Expect = 6e-16 Identities = 62/67 (92%) Strand = Plus / Minus Query: 479 ggagcttggatttgattatcttcgtgacaacttatcacgtaagaaagaacagctagtcat 538 ||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||| || Sbjct: 97500 ggagcttggatttgactatcttcgtgataacttatcacggaacaaagaacagctagttat 97441 Query: 539 gagatgg 545 ||||||| Sbjct: 97440 gagatgg 97434 Score = 83.8 bits (42), Expect = 6e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 135 gaggcgttcgccgtggtgagggaggcggcaaggaggacgctcggcatgcggcacttcgat 194 |||||||| |||||||||||||||||||| ||||||||||| || ||||| ||||||||| Sbjct: 98836 gaggcgtttgccgtggtgagggaggcggcgaggaggacgctggggatgcgccacttcgat 98777 Query: 195 gt 196 || Sbjct: 98776 gt 98775 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 420 atgaagtctgatgagaggagagccaactatatgtgtgacattacatacactaataactcg 479 |||||| |||| ||||| ||||||||||||| ||||||||||||||||||||| |||||| Sbjct: 97818 atgaaggctgacgagagaagagccaactataggtgtgacattacatacactaacaactcg 97759 Query: 480 g 480 | Sbjct: 97758 g 97758 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Minus Query: 74 gaagacggaggagttccgcgcgcgcctgagccgcggggagacgctcgcc 122 ||||||||| ||||||||||| ||||| ||| ||||||||||||||| Sbjct: 99012 gaagacggacgagttccgcgcccgcctcgcccgtggggagacgctcgcc 98964
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Plus Query: 324 gtgactgtaaatgattatttggcacagcgagatgctgaatggatgggccgcgttcatcgt 383 ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| Sbjct: 4733598 gtgactgtaaatgattatttggcacagcgagatgctgaatggatgggtcgtgtgcatcgt 4733657 Query: 384 tttcttggtctaactgtcggtctaattcagg 414 ||||||||||| | || ||||||||||||| Sbjct: 4733658 tttcttggtctttccgtgggtctaattcagg 4733688 Score = 99.6 bits (50), Expect = 9e-18 Identities = 68/74 (91%) Strand = Plus / Plus Query: 225 gatgggtgcattgccgagatgaagactggcgaggggaagacactcgtgtccaccttggca 284 ||||||||||| || |||||||||||||||||||||||||| || ||||| |||||||| Sbjct: 4733047 gatgggtgcatcgcggagatgaagactggcgaggggaagacgcttgtgtctaccttggcg 4733106 Query: 285 gcttatctcaatgc 298 |||||||||||||| Sbjct: 4733107 gcttatctcaatgc 4733120 Score = 93.7 bits (47), Expect = 6e-16 Identities = 62/67 (92%) Strand = Plus / Plus Query: 479 ggagcttggatttgattatcttcgtgacaacttatcacgtaagaaagaacagctagtcat 538 ||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||| || Sbjct: 4734174 ggagcttggatttgactatcttcgtgataacttatcacggaacaaagaacagctagttat 4734233 Query: 539 gagatgg 545 ||||||| Sbjct: 4734234 gagatgg 4734240 Score = 83.8 bits (42), Expect = 6e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 135 gaggcgttcgccgtggtgagggaggcggcaaggaggacgctcggcatgcggcacttcgat 194 |||||||| |||||||||||||||||||| ||||||||||| || ||||| ||||||||| Sbjct: 4732838 gaggcgtttgccgtggtgagggaggcggcgaggaggacgctggggatgcgccacttcgat 4732897 Query: 195 gt 196 || Sbjct: 4732898 gt 4732899 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 420 atgaagtctgatgagaggagagccaactatatgtgtgacattacatacactaataactcg 479 |||||| |||| ||||| ||||||||||||| ||||||||||||||||||||| |||||| Sbjct: 4733856 atgaaggctgacgagagaagagccaactataggtgtgacattacatacactaacaactcg 4733915 Query: 480 g 480 | Sbjct: 4733916 g 4733916 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Plus Query: 74 gaagacggaggagttccgcgcgcgcctgagccgcggggagacgctcgcc 122 ||||||||| ||||||||||| ||||| ||| ||||||||||||||| Sbjct: 4732662 gaagacggacgagttccgcgcccgcctcgcccgtggggagacgctcgcc 4732710
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 125 bits (63), Expect = 2e-25 Identities = 84/91 (92%) Strand = Plus / Plus Query: 324 gtgactgtaaatgattatttggcacagcgagatgctgaatggatgggccgcgttcatcgt 383 ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| Sbjct: 4752382 gtgactgtaaatgattatttggcacagcgagatgctgaatggatgggtcgtgtgcatcgt 4752441 Query: 384 tttcttggtctaactgtcggtctaattcagg 414 ||||||||||| | || ||||||||||||| Sbjct: 4752442 tttcttggtctttccgtgggtctaattcagg 4752472 Score = 99.6 bits (50), Expect = 9e-18 Identities = 68/74 (91%) Strand = Plus / Plus Query: 225 gatgggtgcattgccgagatgaagactggcgaggggaagacactcgtgtccaccttggca 284 ||||||||||| || |||||||||||||||||||||||||| || ||||| |||||||| Sbjct: 4751831 gatgggtgcatcgcggagatgaagactggcgaggggaagacgcttgtgtctaccttggcg 4751890 Query: 285 gcttatctcaatgc 298 |||||||||||||| Sbjct: 4751891 gcttatctcaatgc 4751904 Score = 93.7 bits (47), Expect = 6e-16 Identities = 62/67 (92%) Strand = Plus / Plus Query: 479 ggagcttggatttgattatcttcgtgacaacttatcacgtaagaaagaacagctagtcat 538 ||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||| || Sbjct: 4752958 ggagcttggatttgactatcttcgtgataacttatcacggaacaaagaacagctagttat 4753017 Query: 539 gagatgg 545 ||||||| Sbjct: 4753018 gagatgg 4753024 Score = 83.8 bits (42), Expect = 6e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 135 gaggcgttcgccgtggtgagggaggcggcaaggaggacgctcggcatgcggcacttcgat 194 |||||||| |||||||||||||||||||| ||||||||||| || ||||| ||||||||| Sbjct: 4751622 gaggcgtttgccgtggtgagggaggcggcgaggaggacgctggggatgcgccacttcgat 4751681 Query: 195 gt 196 || Sbjct: 4751682 gt 4751683 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 420 atgaagtctgatgagaggagagccaactatatgtgtgacattacatacactaataactcg 479 |||||| |||| ||||| ||||||||||||| ||||||||||||||||||||| |||||| Sbjct: 4752640 atgaaggctgacgagagaagagccaactataggtgtgacattacatacactaacaactcg 4752699 Query: 480 g 480 | Sbjct: 4752700 g 4752700 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Plus Query: 74 gaagacggaggagttccgcgcgcgcctgagccgcggggagacgctcgcc 122 ||||||||| ||||||||||| ||||| ||| ||||||||||||||| Sbjct: 4751446 gaagacggacgagttccgcgcccgcctcgcccgtggggagacgctcgcc 4751494
>gb|CP000107.1| Ehrlichia canis str. Jake, complete genome Length = 1315030 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 312 ggagttcatgtggtgactgtaaatgattatttggcacagcgagatgctgaatggatggg 370 ||||||||| | || || |||||||||||||||||| |||| ||||||||||||||||| Sbjct: 1286844 ggagttcatatagtcacagtaaatgattatttggcaaagcgtgatgctgaatggatggg 1286902
>emb|BX572095.1| Prochlorococcus marinus MIT9313 complete genome; segment 1/7 Length = 349391 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 318 catgtggtgactgtaaatgattatttggcacagcgagatgctgaatggatgggccgcgtt 377 |||||||| || || |||||||| |||||| ||| ||||||||||||||||||| || Sbjct: 89013 catgtggttacggtcaatgattacctggcacggcgcgatgctgaatggatgggccaggtg 89072 Query: 378 catcgttttcttggtct 394 ||||||||||| ||||| Sbjct: 89073 catcgttttctcggtct 89089
>gb|AC007727.2|F8K7 Arabidopsis thaliana chromosome 1 BAC F8K7 sequence, complete sequence Length = 98581 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 321 gtggtgactgtaaatgattatttggcacagcgagatgctgaatggatgggccgcgttca 379 ||||| ||||| |||||||| |||||||||| ||||||||||||||||| || ||||| Sbjct: 28499 gtggttactgtgaatgattacctggcacagcgtgatgctgaatggatgggtcgtgttca 28441 Score = 44.1 bits (22), Expect = 0.47 Identities = 85/106 (80%) Strand = Plus / Minus Query: 216 gtgctccacgatgggtgcattgccgagatgaagactggcgaggggaagacactcgtgtcc 275 ||||| || ||||| | |||||| ||||||||||| || || ||||| ||||| || || Sbjct: 28780 gtgcttcatgatggatccattgcggagatgaagacaggtgaagggaaaacactagtttct 28721 Query: 276 accttggcagcttatctcaatgcactgactggggatggagttcatg 321 ||||| || || ||||| |||||| | ||||| || || ||||||| Sbjct: 28720 accttagctgcatatcttaatgcattaactggtgagggcgttcatg 28675 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 479 ggagcttggatttgattatct 499 ||||||||||||||||||||| Sbjct: 28163 ggagcttggatttgattatct 28143
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 237 gccgagatgaagactggcgaggggaagacactcgtgtccaccttg 281 |||||||||||||| ||||||||||||||||| ||| | |||||| Sbjct: 2251688 gccgagatgaagaccggcgaggggaagacactggtggcgaccttg 2251644
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 56.0 bits (28), Expect = 1e-04 Identities = 61/72 (84%) Strand = Plus / Minus Query: 315 gttcatgtggtgactgtaaatgattatttggcacagcgagatgctgaatggatgggccgc 374 |||||||| || ||||||||||||||||| || |||||||||| |||||||||| Sbjct: 1620550 gttcatgtagttactgtaaatgattatttagctagaagagatgctgagtggatgggccaa 1620491 Query: 375 gttcatcgtttt 386 |||||||||||| Sbjct: 1620490 gttcatcgtttt 1620479
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome Length = 3481691 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Minus Query: 318 catgtggtgactgtaaatgattatttggcacagcgagatgctgaatggatggg 370 ||||||||||| || ||||| ||| |||| ||||| |||||| |||||||||| Sbjct: 3230391 catgtggtgacggttaatgactatctggcccagcgtgatgctcaatggatggg 3230339
>emb|BX248357.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 4/8 Length = 349535 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 330 gtaaatgattatttggcacagcgagatgctgaatggatggg 370 ||||||||||||||||| |||| |||||||| |||||||| Sbjct: 166315 gtaaatgattatttggcggagcgtgatgctgagtggatggg 166355
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Minus Query: 234 attgccgagatgaagactggcgaggggaagacactcgtgtccaccttggcagcttatctc 293 |||||||| ||||| || |||||||| ||||| || || |||| ||||| ||||||||| Sbjct: 2718790 attgccgaaatgaaaaccggcgagggtaagaccctggtcgccacattggctgcttatctc 2718731 Query: 294 aatgc 298 ||||| Sbjct: 2718730 aatgc 2718726
>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00 Length = 1457619 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Minus Query: 330 gtaaatgattatttggcacagcgagatgctgaatggatggg 370 |||||||| ||| | |||||| ||||||||||||||||||| Sbjct: 780409 gtaaatgactatcttgcacagagagatgctgaatggatggg 780369
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 48.1 bits (24), Expect = 0.030 Identities = 39/44 (88%) Strand = Plus / Plus Query: 237 gccgagatgaagactggcgaggggaagacactcgtgtccacctt 280 |||||||||||||| |||||||| ||||| ||||| ||||||| Sbjct: 2933468 gccgagatgaagacgggcgagggcaagaccctcgtcgccacctt 2933511
>gb|AC144728.11| Medicago truncatula clone mth2-6g7, complete sequence Length = 105161 Score = 48.1 bits (24), Expect = 0.030 Identities = 84/104 (80%) Strand = Plus / Plus Query: 243 atgaagactggcgaggggaagacactcgtgtccaccttggcagcttatctcaatgcactg 302 |||| |||||| || ||||||||||| || ||| ||| |||||||| | |||||| | Sbjct: 90471 atgaggactggagaagggaagacactggttgccattttgccagcttatttgaatgcatta 90530 Query: 303 actggggatggagttcatgtggtgactgtaaatgattatttggc 346 |||| | |||||||| || || |||||||||||||||||||| Sbjct: 90531 gttgggaagggagttcacgttgttactgtaaatgattatttggc 90574
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome Length = 3598621 Score = 48.1 bits (24), Expect = 0.030 Identities = 33/36 (91%) Strand = Plus / Plus Query: 327 actgtaaatgattatttggcacagcgagatgctgaa 362 ||||||||||| ||| |||||||||| ||||||||| Sbjct: 637203 actgtaaatgactatctggcacagcgtgatgctgaa 637238
>gb|AY741371.1| Emiliania huxleyi strain CCMP 373 chloroplast, complete genome Length = 105309 Score = 48.1 bits (24), Expect = 0.030 Identities = 42/48 (87%) Strand = Plus / Minus Query: 315 gttcatgtggtgactgtaaatgattatttggcacagcgagatgctgaa 362 |||||||| ||||| || ||||||||||| |||| |||||||||||| Sbjct: 81510 gttcatgttgtgacggtgaatgattatttagcacgtcgagatgctgaa 81463
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 48.1 bits (24), Expect = 0.030 Identities = 30/32 (93%) Strand = Plus / Minus Query: 343 tggcacagcgagatgctgaatggatgggccgc 374 ||||| |||| ||||||||||||||||||||| Sbjct: 2840129 tggcaaagcgcgatgctgaatggatgggccgc 2840098
>gb|AY343331.1| Ehrlichia ruminantium hypothetical transcriptional regulator gene, complete cds; map1 locus, complete sequence; secA gene, partial cds; and unknown genes Length = 24993 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Plus Query: 312 ggagttcatgtggtgactgtaaatgattatttggcacagcgagatgctgaatggatggg 370 ||||| ||||| || || |||||||||||||| ||| | || |||||||| |||||||| Sbjct: 23172 ggagtacatgtagtaacagtaaatgattatttagcaaaacgtgatgctgattggatggg 23230
>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome Length = 1512977 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Plus Query: 312 ggagttcatgtggtgactgtaaatgattatttggcacagcgagatgctgaatggatggg 370 ||||| ||||| || || |||||||||||||| ||| | || |||||||| |||||||| Sbjct: 1474464 ggagtacatgtagtaacagtaaatgattatttagcaaaacgtgatgctgattggatggg 1474522
>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome Length = 1499920 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Plus Query: 312 ggagttcatgtggtgactgtaaatgattatttggcacagcgagatgctgaatggatggg 370 ||||| ||||| || || |||||||||||||| ||| | || |||||||| |||||||| Sbjct: 1460808 ggagtacatgtagtaacagtaaatgattatttagcaaaacgtgatgctgattggatggg 1460866
>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome Length = 1516355 Score = 46.1 bits (23), Expect = 0.12 Identities = 50/59 (84%) Strand = Plus / Plus Query: 312 ggagttcatgtggtgactgtaaatgattatttggcacagcgagatgctgaatggatggg 370 ||||| ||||| || || |||||||||||||| ||| | || |||||||| |||||||| Sbjct: 1496695 ggagtacatgtagtaacagtaaatgattatttagcaaaacgtgatgctgattggatggg 1496753
>emb|AJ276296.1|RLE276296 Rhizobium leguminosarum inositol degradation operon, iolD gene, iolE gene and iolB gene Length = 5606 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 50 gctttccgacgaacagctgaagg 72 ||||||||||||||||||||||| Sbjct: 4794 gctttccgacgaacagctgaagg 4816
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 174 ctcggcatgcggcacttcgatgt 196 ||||||||||||||||||||||| Sbjct: 1051255 ctcggcatgcggcacttcgatgt 1051277 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 237 gccgagatgaagactggcgaggggaagac 265 |||||||||||||| |||||||| ||||| Sbjct: 1051318 gccgagatgaagacgggcgagggcaagac 1051346
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 237 gccgagatgaagactggcgaggggaagacactcgtgtccaccttggc 283 |||||||||||||| |||||||| ||||| || ||| ||||| |||| Sbjct: 1190887 gccgagatgaagacgggcgagggtaagaccctggtggccaccctggc 1190841
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Minus Query: 237 gccgagatgaagactggcgaggggaagacactcgtgtccaccttggc 283 |||||||||||||| |||||||| ||||| || ||| ||||| |||| Sbjct: 865796 gccgagatgaagacgggcgagggtaagaccctggtggccaccctggc 865750
>gb|AE006249.1| Lactococcus lactis subsp. lactis IL1403 section 11 of 218 of the complete genome Length = 11976 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 480 gagcttggatttgattatcttcgtga 505 |||||||| ||||||||||||||||| Sbjct: 9819 gagcttggctttgattatcttcgtga 9844
>emb|BX321858.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 3/10 Length = 306050 Score = 44.1 bits (22), Expect = 0.47 Identities = 34/38 (89%) Strand = Plus / Plus Query: 333 aatgattatttggcacagcgagatgctgaatggatggg 370 ||||||||| ||||| |||| ||||| ||||||||||| Sbjct: 262804 aatgattatctggcaaagcgtgatgcggaatggatggg 262841
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 44.1 bits (22), Expect = 0.47 Identities = 52/62 (83%) Strand = Plus / Plus Query: 234 attgccgagatgaagactggcgaggggaagacactcgtgtccaccttggcagcttatctc 293 |||||||||||||| |||||||| ||||| || || || |||||||| | || |||||| Sbjct: 767790 attgccgagatgaaaactggcgaagggaaaaccctggtcgccaccttgcctgcctatctc 767849 Query: 294 aa 295 || Sbjct: 767850 aa 767851
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 523 aagaacagctagtcatgagatg 544 |||||||||||||||||||||| Sbjct: 14084620 aagaacagctagtcatgagatg 14084641
>dbj|AP004136.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1287_H05 Length = 97812 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 523 aagaacagctagtcatgagatg 544 |||||||||||||||||||||| Sbjct: 66130 aagaacagctagtcatgagatg 66151
>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome Length = 2427734 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 484 ttggatttgattatcttcgtgacaa 508 |||| |||||||||||||||||||| Sbjct: 664764 ttggctttgattatcttcgtgacaa 664788
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 237 gccgagatgaagactggcgaggggaagac 265 |||||||||||||| |||||||| ||||| Sbjct: 1055504 gccgagatgaagaccggcgagggtaagac 1055532
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11, complete sequence Length = 204649 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 376 ttcatcgttttcttggtctaa 396 ||||||||||||||||||||| Sbjct: 5100 ttcatcgttttcttggtctaa 5080
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 174 ctcggcatgcggcacttcgatgttcagat 202 ||||| ||||||||||||||||| ||||| Sbjct: 543776 ctcgggatgcggcacttcgatgtgcagat 543804
>gb|AE013022.1| Thermoanaerobacter tengcongensis MB4, section 49 of 244 of the complete genome Length = 11441 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 234 attgccgagatgaagactggcgaggggaagaca 266 |||||||||||||||||||| || || |||||| Sbjct: 8966 attgccgagatgaagactggtgaaggtaagaca 8998
>gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0053D02, complete sequence Length = 157106 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 376 ttcatcgttttcttggtctaa 396 ||||||||||||||||||||| Sbjct: 155352 ttcatcgttttcttggtctaa 155332
>gb|CP000238.1| Baumannia cicadellinicola str. Hc (Homalodisca coagulata), complete genome Length = 686194 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 330 gtaaatgattatttggcacagcgagatgctgaa 362 |||||||||||||| ||||| || ||||||||| Sbjct: 532494 gtaaatgattatttagcacaacgtgatgctgaa 532462
>gb|AC122882.4| Mus musculus BAC clone RP23-80M17 from chromosome 7, complete sequence Length = 260989 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 386 tcttggtctaactgtcggtct 406 ||||||||||||||||||||| Sbjct: 77345 tcttggtctaactgtcggtct 77365
>emb|Z49124.1|SOSECA S.oleracea chloroplast secA mRNA Length = 3739 Score = 42.1 bits (21), Expect = 1.9 Identities = 51/61 (83%) Strand = Plus / Plus Query: 283 cagcttatctcaatgcactgactggggatggagttcatgtggtgactgtaaatgattatt 342 |||| ||||||||||| ||||||| | || |||||||| || ||||| |||||||||| Sbjct: 735 cagcgtatctcaatgccttgactggtaaaggggttcatgttgtcactgttaatgattatt 794 Query: 343 t 343 | Sbjct: 795 t 795
>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome Length = 1842899 Score = 42.1 bits (21), Expect = 1.9 Identities = 63/77 (81%) Strand = Plus / Minus Query: 315 gttcatgtggtgactgtaaatgattatttggcacagcgagatgctgaatggatgggccgc 374 |||||||| || || || ||||||||||| || || | ||||||||||||||||| | Sbjct: 1158453 gttcatgttgttacggttaatgattatttagctaagagggatgctgaatggatgggacaa 1158394 Query: 375 gttcatcgttttcttgg 391 || || ||||||||||| Sbjct: 1158393 gtacaccgttttcttgg 1158377
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 cggcatgcggcacttcgatgt 196 ||||||||||||||||||||| Sbjct: 847706 cggcatgcggcacttcgatgt 847686
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 376 ttcatcgttttcttggtctaa 396 ||||||||||||||||||||| Sbjct: 27924935 ttcatcgttttcttggtctaa 27924915
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 237 gccgagatgaagactggcgaggggaagac 265 |||||||||||||| |||||||| ||||| Sbjct: 854383 gccgagatgaagaccggcgagggcaagac 854411
>gb|AE014133.1| Streptococcus mutans UA159, complete genome Length = 2030921 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 484 ttggatttgattatcttcgtgacaa 508 |||| |||||||||||||||||||| Sbjct: 1736292 ttggttttgattatcttcgtgacaa 1736268
>ref|NM_116410.1| Arabidopsis thaliana ATP binding AT4G01800 mRNA, complete cds Length = 3069 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 gagcttggatttgattatct 499 |||||||||||||||||||| Sbjct: 763 gagcttggatttgattatct 782
>gb|AC007138.1| Arabidopsis thaliana BAC T7B11 from chromosome IV near 10 cM, complete sequence Length = 120185 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 gagcttggatttgattatct 499 |||||||||||||||||||| Sbjct: 18619 gagcttggatttgattatct 18600
>gb|AC099644.6| Mus musculus chromosome 15, clone RP24-359B20, complete sequence Length = 135063 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 ggagagccaactatatgtgt 455 |||||||||||||||||||| Sbjct: 40259 ggagagccaactatatgtgt 40278
>gb|AY458637.2| Uncultured bacterium 440 clone EBAC750-02H05 genomic sequence Length = 28260 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 310 atggagttcatgtggtgactgtaaatgattat 341 |||| |||||||| || ||||||||||||||| Sbjct: 1971 atggtgttcatgttgtaactgtaaatgattat 1940
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 40.1 bits (20), Expect = 7.4 Identities = 47/56 (83%) Strand = Plus / Minus Query: 249 actggcgaggggaagacactcgtgtccaccttggcagcttatctcaatgcactgac 304 ||||||||||| |||||||| || | ||| || ||||||| |||||||| ||||| Sbjct: 2385339 actggcgagggcaagacactggtcgcgaccctgccagcttacctcaatgccctgac 2385284
>emb|X65961.1|CHPLSECA P.lutherii chloroplast secA gene, orf93 and orf42 Length = 3678 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 237 gccgagatgaagactggcgaggggaagacact 268 |||||||||||||| |||||||| || ||||| Sbjct: 1061 gccgagatgaagacaggcgagggaaaaacact 1092
>emb|BX248358.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 5/8 Length = 348408 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 tgctgaatggatgggccgcg 375 |||||||||||||||||||| Sbjct: 265406 tgctgaatggatgggccgcg 265387
>emb|AL161493.2|ATCHRIV5 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 5 Length = 198220 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 gagcttggatttgattatct 499 |||||||||||||||||||| Sbjct: 3972 gagcttggatttgattatct 3953
>emb|AL161492.2|ATCHRIV4 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 4 Length = 198697 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 gagcttggatttgattatct 499 |||||||||||||||||||| Sbjct: 197669 gagcttggatttgattatct 197650
>gb|AC021549.9| Homo sapiens chromosome 18, clone RP11-650P15, complete sequence Length = 183066 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 tgactgtaaatgattatttg 344 |||||||||||||||||||| Sbjct: 71434 tgactgtaaatgattatttg 71453
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 7.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 237 gccgagatgaagactggcgaggggaagacactcgtgtccacctt 280 |||||||||||||| || ||||| ||||| || ||| ||||||| Sbjct: 297512 gccgagatgaagacgggtgagggcaagactcttgtggccacctt 297469
>gb|AF461556.1| Pseudomonas syringae pv. delphinii exchangeable effector locus, partial sequence Length = 4576 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 cgcctcgtctccgccgtcaa 25 |||||||||||||||||||| Sbjct: 3137 cgcctcgtctccgccgtcaa 3156
>gb|AC159099.4| Mus musculus chromosome 15, clone RP24-132A22, complete sequence Length = 147359 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 ggagagccaactatatgtgt 455 |||||||||||||||||||| Sbjct: 43700 ggagagccaactatatgtgt 43681
>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III, complete sequence Length = 907057 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 ctcgtctccgccgtcaacgc 28 |||||||||||||||||||| Sbjct: 231465 ctcgtctccgccgtcaacgc 231446
>ref|NM_208687.1| Eremothecium gossypii ACL070Cp (ACL070C), mRNA Length = 918 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ctcgtctccgccgtcaacgc 28 |||||||||||||||||||| Sbjct: 787 ctcgtctccgccgtcaacgc 806
>gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome Length = 1698955 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 315 gttcatgtggtgactgtaaatgattatttggc 346 |||||||| ||||| || |||||||||||||| Sbjct: 1499221 gttcatgtagtgaccgtcaatgattatttggc 1499190
>gb|AY850258.1| Pasteurella trehalosi transferrin binding protein B (tbpB) gene, tbpB5.3 allele and transferrin binding protein A (tbpA) gene, tbpA3.3 allele, partial cds Length = 4496 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 gacaacttatcacgtaagaa 523 |||||||||||||||||||| Sbjct: 2892 gacaacttatcacgtaagaa 2911
>gb|AY850257.1| Pasteurella trehalosi transferrin binding protein B (tbpB) gene, tbpB5.2 allele and transferrin binding protein A (tbpA) gene, tbpA3.1 allele, partial cds Length = 4496 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 gacaacttatcacgtaagaa 523 |||||||||||||||||||| Sbjct: 2892 gacaacttatcacgtaagaa 2911
>gb|AY850256.1| Pasteurella trehalosi transferrin binding protein B (tbpB) gene, tbpB5.1 allele and transferrin binding protein A (tbpA) gene, tbpA3.2 allele, partial cds Length = 4496 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 gacaacttatcacgtaagaa 523 |||||||||||||||||||| Sbjct: 2892 gacaacttatcacgtaagaa 2911
>gb|AY850255.1| Mannheimia glucosida transferrin binding protein B (tbpB) gene, tbpB2.8 allele and transferrin binding protein A (tbpA) gene, tbpA2.2 allele, partial cds Length = 4527 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 gacaacttatcacgtaagaa 523 |||||||||||||||||||| Sbjct: 2923 gacaacttatcacgtaagaa 2942
>gb|AY850254.1| Mannheimia glucosida transferrin binding protein B (tbpB) gene, tbpB2.7 allele and transferrin binding protein A (tbpA) gene, tbpA2.5 allele, partial cds Length = 4527 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 gacaacttatcacgtaagaa 523 |||||||||||||||||||| Sbjct: 2923 gacaacttatcacgtaagaa 2942
>gb|AY850253.1| Mannheimia glucosida transferrin binding protein B (tbpB) gene, tbpB2.5 allele and transferrin binding protein A (tbpA) gene, tbpA2.3 allele, partial cds Length = 4527 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 gacaacttatcacgtaagaa 523 |||||||||||||||||||| Sbjct: 2923 gacaacttatcacgtaagaa 2942
>gb|AY850252.1| Mannheimia glucosida transferrin binding protein B (tbpB) gene, tbpB2.6 allele and transferrin binding protein A (tbpA) gene, tbpA2.1 allele, partial cds Length = 4527 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 gacaacttatcacgtaagaa 523 |||||||||||||||||||| Sbjct: 2923 gacaacttatcacgtaagaa 2942
>gb|AY850251.1| Mannheimia glucosida transferrin binding protein B (tbpB) gene, tbpB2.9 allele and transferrin binding protein A (tbpA) gene, tbpA2.4 allele, partial cds Length = 4527 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 gacaacttatcacgtaagaa 523 |||||||||||||||||||| Sbjct: 2923 gacaacttatcacgtaagaa 2942
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 7.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 234 attgccgagatgaagactggcgaggggaagac 265 ||||||||||||||||| ||||| || ||||| Sbjct: 144262 attgccgagatgaagaccggcgaaggcaagac 144293 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,755,536 Number of Sequences: 3902068 Number of extensions: 3755536 Number of successful extensions: 63157 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62454 Number of HSP's gapped (non-prelim): 702 length of query: 547 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 524 effective length of database: 17,143,297,704 effective search space: 8983087996896 effective search space used: 8983087996896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
