ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63m21 |
|---|---|
| Clone Library Name | barley_pub |
>GLTP_HUMAN (Q9NZD2) Glycolipid transfer protein (GLTP)| Length = 208 Score = 79.7 bits (195), Expect = 7e-15 Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 8/146 (5%) Frame = +3 Query: 150 PFLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKK 326 PFL+ + P D G+ + +K+DI GNIT+++ Y ++PAK+ L +++ E E Sbjct: 21 PFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMY 80 Query: 327 TAKGSS-SCTNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWH 485 A+ T L+WL R + F+ +++ D HP+ A T +Y LKK+H Sbjct: 81 GAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-TKAYEMALKKYH 139 Query: 486 GWLASSSFTVAMKLAPNKDKFMEVIS 563 GW+ F A+ AP K F++ +S Sbjct: 140 GWIVQKIFQAALYAAPYKSDFLKALS 165
>GLTP_MOUSE (Q9JL62) Glycolipid transfer protein (GLTP)| Length = 208 Score = 78.6 bits (192), Expect = 1e-14 Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 8/146 (5%) Frame = +3 Query: 150 PFLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKK 326 PFL+ + P D G+ + +K+DI GNIT+++ Y +DPAK++ L +++ E Sbjct: 21 PFLEAVAHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTDPAKFKTLQNILEVEKGMY 80 Query: 327 TAKGSS-SCTNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWH 485 A+ T LLWL R + F+ +++ D HP+ A +Y LKK+H Sbjct: 81 GAEWPKVGATLALLWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-NKAYEMALKKYH 139 Query: 486 GWLASSSFTVAMKLAPNKDKFMEVIS 563 GWL F A+ AP K F++ +S Sbjct: 140 GWLVQKIFKAALYAAPYKSDFLKALS 165
>GLTP_PIG (P68266) Glycolipid transfer protein (GLTP)| Length = 208 Score = 78.2 bits (191), Expect = 2e-14 Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 8/146 (5%) Frame = +3 Query: 150 PFLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKK 326 PFL+ + P D G+ + +K+DI GNIT+++ Y ++P K+ L +++ E E Sbjct: 21 PFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMY 80 Query: 327 TAKGSS-SCTNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWH 485 A+ T L+WL R + F+ +++ D HP+ A T +Y LKK+H Sbjct: 81 GAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-TKAYEMALKKYH 139 Query: 486 GWLASSSFTVAMKLAPNKDKFMEVIS 563 GW+ F A+ AP K F++ +S Sbjct: 140 GWIVQKIFQAALYAAPYKSDFLKALS 165
>GLTP_BOVIN (P68265) Glycolipid transfer protein (GLTP)| Length = 208 Score = 78.2 bits (191), Expect = 2e-14 Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 8/146 (5%) Frame = +3 Query: 150 PFLDVCKQILPVLDKFGAAMAI-VKSDIGGNITRLENKYSSDPAKYEHLYTMVQEEVEKK 326 PFL+ + P D G+ + +K+DI GNIT+++ Y ++P K+ L +++ E E Sbjct: 21 PFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEVEKEMY 80 Query: 327 TAKGSS-SCTNGLLWLTRAMDFLVELFRNLLD------HPDWTMSQACTDSYTKTLKKWH 485 A+ T L+WL R + F+ +++ D HP+ A T +Y LKK+H Sbjct: 81 GAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNA-TKAYEMALKKYH 139 Query: 486 GWLASSSFTVAMKLAPNKDKFMEVIS 563 GW+ F A+ AP K F++ +S Sbjct: 140 GWIVQKIFQAALYAAPYKSDFLKALS 165
>TBFG_EPTST (Q90502) Thread biopolymer filament gamma subunit| Length = 603 Score = 34.7 bits (78), Expect = 0.25 Identities = 26/138 (18%), Positives = 63/138 (45%), Gaps = 2/138 (1%) Frame = +3 Query: 99 LEGMNHVRSDSGVMLSKPFLDVCKQILPVLDKFGAAMAIVKSDIGGNITRLENKYSSDPA 278 ++G++ ++ +L K + K++ P+ ++ + ++ +G +T L+N+ S D Sbjct: 363 IQGISTQTTEQISILDKEINTLEKELQPLNVEYQRLLTTYQT-LGDRLTDLQNRESIDLV 421 Query: 279 KYEHLYTMVQEEVEKKTAKGSSSCT--NGLLWLTRAMDFLVELFRNLLDHPDWTMSQACT 452 ++++ YT ++E+E LL + A+D + ++ LL+ + + A Sbjct: 422 QFQNTYTRYEQEIEGNQVDLQRQLVTYQQLLDVKTALDAEIATYKKLLEGQELMVRTAMA 481 Query: 453 DSYTKTLKKWHGWLASSS 506 D + G L +S Sbjct: 482 DDFAHATVVRSGTLGGAS 499
>CP19A_ORYLA (Q92087) Cytochrome P450 19A1 (EC 1.14.14.1) (Aromatase) (CYPXIX)| (Estrogen synthetase) (P-450AROM) Length = 518 Score = 31.2 bits (69), Expect = 2.7 Identities = 14/44 (31%), Positives = 30/44 (68%), Gaps = 1/44 (2%) Frame = -3 Query: 253 SNLVIFPPI-SLFTIAIAAPNLSKTGKICLQTSRKGLDSMTPLS 125 +N+ ++ I + FT A+ PNL +T ++C+ +++ LD+++ LS Sbjct: 150 NNVALWKKIRTYFTKALTGPNLQQTVEVCVTSTQTHLDNLSSLS 193
>TILS_STRT2 (Q5M6K9) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 421 Score = 30.8 bits (68), Expect = 3.5 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 12/93 (12%) Frame = +3 Query: 69 EMAETVFSPCLEG--MNH------VRSDSGVMLSKPFLDVCKQILPVL----DKFGAAMA 212 + AET+F L G + H VRS + +PFL + K LPV D+ +++A Sbjct: 122 DQAETIFMRLLRGSRLRHLSGICDVRSFGTGQIIRPFLHIPKDQLPVTFHFEDRSNSSLA 181 Query: 213 IVKSDIGGNITRLENKYSSDPAKYEHLYTMVQE 311 +++ I +T L +P EHL + E Sbjct: 182 YLRNRI--RLTYLPTLSQENPKFKEHLCLLADE 212
>TILS_STRT1 (Q5M217) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 421 Score = 30.8 bits (68), Expect = 3.5 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 12/93 (12%) Frame = +3 Query: 69 EMAETVFSPCLEG--MNH------VRSDSGVMLSKPFLDVCKQILPVL----DKFGAAMA 212 + AET+F L G + H VRS + +PFL + K LPV D+ +++A Sbjct: 122 DQAETIFMRLLRGSRLRHLSGICDVRSFGTGQIIRPFLHIPKDQLPVTFHFEDRSNSSLA 181 Query: 213 IVKSDIGGNITRLENKYSSDPAKYEHLYTMVQE 311 +++ I +T L +P EHL + E Sbjct: 182 YLRNRI--RLTYLPTLSQENPKFKEHLCLLADE 212
>GUTA_BACSU (O34368) Probable glucitol transport protein gutA| Length = 463 Score = 30.8 bits (68), Expect = 3.5 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Frame = -3 Query: 406 RNSSTRKSMALVSHRSPLVQLDEPFAVF---FSTSSWTMVYKCSYFAGSEEYLFSNLVIF 236 + +K+++++ PL+ L F F F+ TMVY +Y +E++F V+F Sbjct: 230 KKQGIKKTLSVLFKNKPLLMLISSFLAFAIGFNIKLSTMVYYFTYNVNHKEFVFMGTVLF 289
>UBC3_YEAST (P14682) Ubiquitin-conjugating enzyme E2-34 kDa (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (Cell division control protein 34) (E3 ubiquitin ligase complex SCF subunit CDC34) Length = 295 Score = 30.4 bits (67), Expect = 4.6 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = -3 Query: 268 EEYLFSNLVIFPPISLFTIAIAAPNLSKTGKICLQTSRKGLDSMTPLSDL-TW 113 E++ FS PP FT AI PN+ + G++C+ + D MT D TW Sbjct: 68 EDFPFS-----PPQFRFTPAIYHPNVYRDGRLCISILHQSGDPMTDEPDAETW 115
>MUKB_VIBVY (Q7MJ64) Chromosome partition protein mukB (Structural maintenance of| chromosome-related protein) Length = 1487 Score = 30.0 bits (66), Expect = 6.0 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Frame = +3 Query: 168 KQILPVLDKFGAAMAIVKSD-IGGNITRLENKYS--SDPAKYEHLYTMVQEEVEKKTA 332 KQ L +LDK MA++ D IG LE K + +D ++ + + E++E + A Sbjct: 871 KQALTMLDKLAPMMAVISDDTIGERFAELEEKIAQLADAKQFLNAHAKAVEQLESQLA 928
>UBC13_SCHPO (O13685) Ubiquitin-conjugating enzyme E2 13 (EC 6.3.2.19)| (Ubiquitin-protein ligase 13) (Ubiquitin carrier protein 13) Length = 148 Score = 30.0 bits (66), Expect = 6.0 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 268 EEYLFSNLVIFPPISLFTIAIAAPNLSKTGKICLQTSRK 152 E +L + PP F I PN+ K G+ICL T +K Sbjct: 54 ELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKK 92
>MURE_ECOLI (P22188) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 494 Score = 30.0 bits (66), Expect = 6.0 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = +2 Query: 86 IQPVFGRDE-------PCQVGQRGHAVQALP*CLQA-NLACLG*IWCCYG 211 +QPV GR E P V H AL LQA L C G +WC +G Sbjct: 335 LQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFG 384
>MURE_ECOL6 (Q8FL67) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 494 Score = 30.0 bits (66), Expect = 6.0 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = +2 Query: 86 IQPVFGRDE-------PCQVGQRGHAVQALP*CLQA-NLACLG*IWCCYG 211 +QPV GR E P V H AL LQA L C G +WC +G Sbjct: 335 LQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFG 384
>MURE_ECO57 (Q8X9Z2) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 494 Score = 30.0 bits (66), Expect = 6.0 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = +2 Query: 86 IQPVFGRDE-------PCQVGQRGHAVQALP*CLQA-NLACLG*IWCCYG 211 +QPV GR E P V H AL LQA L C G +WC +G Sbjct: 335 LQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFG 384
>MURE_SHIFL (Q83MG0) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 495 Score = 30.0 bits (66), Expect = 6.0 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = +2 Query: 86 IQPVFGRDE-------PCQVGQRGHAVQALP*CLQA-NLACLG*IWCCYG 211 +QPV GR E P V H AL LQA L C G +WC +G Sbjct: 336 LQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFG 385
>MURE_SALTY (Q8ZRU7) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 495 Score = 30.0 bits (66), Expect = 6.0 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = +2 Query: 86 IQPVFGRDE-------PCQVGQRGHAVQALP*CLQA-NLACLG*IWCCYG 211 +QPV GR E P V H AL LQA L C G +WC +G Sbjct: 336 LQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFG 385
>MURE_SALTI (Q8Z9H3) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 495 Score = 30.0 bits (66), Expect = 6.0 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = +2 Query: 86 IQPVFGRDE-------PCQVGQRGHAVQALP*CLQA-NLACLG*IWCCYG 211 +QPV GR E P V H AL LQA L C G +WC +G Sbjct: 336 LQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFG 385
>EX5C_HAEIN (P44945) Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)| Length = 1121 Score = 29.6 bits (65), Expect = 7.9 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%) Frame = -2 Query: 251 QPRDISSN---ITLHNCHSSTKFIQDRQDLLADIKEGLGQHDPAVRP 120 +P +I+ N +TLH+CHS+ + ++ D L D L DP++ P Sbjct: 376 KPLNIAKNDRTLTLHSCHSAMREVEVLHDYLLD----LFNQDPSLTP 418
>ADH1_ASPFL (P41747) Alcohol dehydrogenase 1 (EC 1.1.1.1) (Alcohol| dehydrogenase I) Length = 349 Score = 29.6 bits (65), Expect = 7.9 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%) Frame = -2 Query: 179 QDLLADIK----EGLGQHDPAVRPDMVHPFQTRAEY 84 QDL+AD+K EGLG H + PFQ AEY Sbjct: 226 QDLVADVKAATPEGLGAHAVILLAVAEKPFQQAAEY 261 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,097,008 Number of Sequences: 219361 Number of extensions: 2063376 Number of successful extensions: 6687 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 6440 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6681 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
