ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bah63m17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_506898.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1148_D05.1 patrial mRNA Length = 1652 Score = 557 bits (281), Expect = e-155 Identities = 470/533 (88%) Strand = Plus / Plus Query: 102 cgccgccgctcaaggacgccgtcggaggcctggaccgcgaccccttcgtcgccctcctcg 161 ||||| |||||| ||||||||| || ||||| |||||||||||||||||| ||||||||| Sbjct: 85 cgccgtcgctcagggacgccgtgggcggcctcgaccgcgaccccttcgtctccctcctcg 144 Query: 162 ccaagctgatcggcgagtcccagcgcctgcagaacgacccgccggccctcgttccgcagg 221 ||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 145 ggaagctcatcggcgagtcccgccgcctgcagaacgacccgccggccctcgtcccgcagg 204 Query: 222 aggacctcgtggcgcagcacgtggtcgacgcgctccgcccggtctcgacggaaaccgatg 281 |||||||||||||||||||||||||||||||||||| |||||| || | ||| |||| | Sbjct: 205 aggacctcgtggcgcagcacgtggtcgacgcgctcctcccggtgtccatggagaccgggg 264 Query: 282 gcggcccgctcgtcgtgcggaaggtgagctacaccgacggccggagcaacgtcatcgtcg 341 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct: 265 gcggcccgctcgtcgtgcggaaggtgagctacgccgagggccggagcaacgtcatcgtcg 324 Query: 342 agtaccccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacatggacgtcg 401 ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct: 325 agtaccccggcaccgtccccggccgcgccatctccttcgtcggcatgcacatggacgtcg 384 Query: 402 ttccggccaaccctagcgaatgggacttcgatcccttctcactaaccttcgaaggtgatg 461 | || |||||||| ||||||||| |||||||||||||||||||| || || |||| | Sbjct: 385 tccccgccaaccccgacgaatgggatttcgatcccttctcactaacgtttgacagtgaag 444 Query: 462 acaaggaaaagcttaggggccgcgggacgacggactgccttggtcatgtggcgctagtga 521 ||||||| || ||||||||||| ||||| || ||||||||||| ||||||||||| || Sbjct: 445 acaaggacaaacttaggggccgtgggacaaccgactgccttggccatgtggcgctggttg 504 Query: 522 ctcagctcatgcggcggcttggtgaggtgaaaccaccattgaagcattctgtcattgcgg 581 ||||||||||| || | ||||||||||| || || |||| ||||| |||||||||| Sbjct: 505 ctcagctcatgaggagacttggtgaggtcaagccggtgctgaaacattcggtcattgcgg 564 Query: 582 tgttcattgccaatgaagagaattcatcggtcactggcattggtgttgatggc 634 |||||||||||||||| || || ||| |||||||||||||||| |||||| Sbjct: 565 tgttcattgccaatgaggaaaactcacttatcactggcattggtgtcgatggc 617
>ref|XM_467237.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1652 Score = 557 bits (281), Expect = e-155 Identities = 470/533 (88%) Strand = Plus / Plus Query: 102 cgccgccgctcaaggacgccgtcggaggcctggaccgcgaccccttcgtcgccctcctcg 161 ||||| |||||| ||||||||| || ||||| |||||||||||||||||| ||||||||| Sbjct: 85 cgccgtcgctcagggacgccgtgggcggcctcgaccgcgaccccttcgtctccctcctcg 144 Query: 162 ccaagctgatcggcgagtcccagcgcctgcagaacgacccgccggccctcgttccgcagg 221 ||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 145 ggaagctcatcggcgagtcccgccgcctgcagaacgacccgccggccctcgtcccgcagg 204 Query: 222 aggacctcgtggcgcagcacgtggtcgacgcgctccgcccggtctcgacggaaaccgatg 281 |||||||||||||||||||||||||||||||||||| |||||| || | ||| |||| | Sbjct: 205 aggacctcgtggcgcagcacgtggtcgacgcgctcctcccggtgtccatggagaccgggg 264 Query: 282 gcggcccgctcgtcgtgcggaaggtgagctacaccgacggccggagcaacgtcatcgtcg 341 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct: 265 gcggcccgctcgtcgtgcggaaggtgagctacgccgagggccggagcaacgtcatcgtcg 324 Query: 342 agtaccccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacatggacgtcg 401 ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct: 325 agtaccccggcaccgtccccggccgcgccatctccttcgtcggcatgcacatggacgtcg 384 Query: 402 ttccggccaaccctagcgaatgggacttcgatcccttctcactaaccttcgaaggtgatg 461 | || |||||||| ||||||||| |||||||||||||||||||| || || |||| | Sbjct: 385 tccccgccaaccccgacgaatgggatttcgatcccttctcactaacgtttgacagtgaag 444 Query: 462 acaaggaaaagcttaggggccgcgggacgacggactgccttggtcatgtggcgctagtga 521 ||||||| || ||||||||||| ||||| || ||||||||||| ||||||||||| || Sbjct: 445 acaaggacaaacttaggggccgtgggacaaccgactgccttggccatgtggcgctggttg 504 Query: 522 ctcagctcatgcggcggcttggtgaggtgaaaccaccattgaagcattctgtcattgcgg 581 ||||||||||| || | ||||||||||| || || |||| ||||| |||||||||| Sbjct: 505 ctcagctcatgaggagacttggtgaggtcaagccggtgctgaaacattcggtcattgcgg 564 Query: 582 tgttcattgccaatgaagagaattcatcggtcactggcattggtgttgatggc 634 |||||||||||||||| || || ||| |||||||||||||||| |||||| Sbjct: 565 tgttcattgccaatgaggaaaactcacttatcactggcattggtgtcgatggc 617
>dbj|AK105916.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-H10, full insert sequence Length = 1711 Score = 557 bits (281), Expect = e-155 Identities = 470/533 (88%) Strand = Plus / Plus Query: 102 cgccgccgctcaaggacgccgtcggaggcctggaccgcgaccccttcgtcgccctcctcg 161 ||||| |||||| ||||||||| || ||||| |||||||||||||||||| ||||||||| Sbjct: 144 cgccgtcgctcagggacgccgtgggcggcctcgaccgcgaccccttcgtctccctcctcg 203 Query: 162 ccaagctgatcggcgagtcccagcgcctgcagaacgacccgccggccctcgttccgcagg 221 ||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 204 ggaagctcatcggcgagtcccgccgcctgcagaacgacccgccggccctcgtcccgcagg 263 Query: 222 aggacctcgtggcgcagcacgtggtcgacgcgctccgcccggtctcgacggaaaccgatg 281 |||||||||||||||||||||||||||||||||||| |||||| || | ||| |||| | Sbjct: 264 aggacctcgtggcgcagcacgtggtcgacgcgctcctcccggtgtccatggagaccgggg 323 Query: 282 gcggcccgctcgtcgtgcggaaggtgagctacaccgacggccggagcaacgtcatcgtcg 341 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct: 324 gcggcccgctcgtcgtgcggaaggtgagctacgccgagggccggagcaacgtcatcgtcg 383 Query: 342 agtaccccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacatggacgtcg 401 ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct: 384 agtaccccggcaccgtccccggccgcgccatctccttcgtcggcatgcacatggacgtcg 443 Query: 402 ttccggccaaccctagcgaatgggacttcgatcccttctcactaaccttcgaaggtgatg 461 | || |||||||| ||||||||| |||||||||||||||||||| || || |||| | Sbjct: 444 tccccgccaaccccgacgaatgggatttcgatcccttctcactaacgtttgacagtgaag 503 Query: 462 acaaggaaaagcttaggggccgcgggacgacggactgccttggtcatgtggcgctagtga 521 ||||||| || ||||||||||| ||||| || ||||||||||| ||||||||||| || Sbjct: 504 acaaggacaaacttaggggccgtgggacaaccgactgccttggccatgtggcgctggttg 563 Query: 522 ctcagctcatgcggcggcttggtgaggtgaaaccaccattgaagcattctgtcattgcgg 581 ||||||||||| || | ||||||||||| || || |||| ||||| |||||||||| Sbjct: 564 ctcagctcatgaggagacttggtgaggtcaagccggtgctgaaacattcggtcattgcgg 623 Query: 582 tgttcattgccaatgaagagaattcatcggtcactggcattggtgttgatggc 634 |||||||||||||||| || || ||| |||||||||||||||| |||||| Sbjct: 624 tgttcattgccaatgaggaaaactcacttatcactggcattggtgtcgatggc 676
>dbj|AK101568.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050F24, full insert sequence Length = 1688 Score = 557 bits (281), Expect = e-155 Identities = 470/533 (88%) Strand = Plus / Plus Query: 102 cgccgccgctcaaggacgccgtcggaggcctggaccgcgaccccttcgtcgccctcctcg 161 ||||| |||||| ||||||||| || ||||| |||||||||||||||||| ||||||||| Sbjct: 121 cgccgtcgctcagggacgccgtgggcggcctcgaccgcgaccccttcgtctccctcctcg 180 Query: 162 ccaagctgatcggcgagtcccagcgcctgcagaacgacccgccggccctcgttccgcagg 221 ||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 181 ggaagctcatcggcgagtcccgccgcctgcagaacgacccgccggccctcgtcccgcagg 240 Query: 222 aggacctcgtggcgcagcacgtggtcgacgcgctccgcccggtctcgacggaaaccgatg 281 |||||||||||||||||||||||||||||||||||| |||||| || | ||| |||| | Sbjct: 241 aggacctcgtggcgcagcacgtggtcgacgcgctcctcccggtgtccatggagaccgggg 300 Query: 282 gcggcccgctcgtcgtgcggaaggtgagctacaccgacggccggagcaacgtcatcgtcg 341 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct: 301 gcggcccgctcgtcgtgcggaaggtgagctacgccgagggccggagcaacgtcatcgtcg 360 Query: 342 agtaccccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacatggacgtcg 401 ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct: 361 agtaccccggcaccgtccccggccgcgccatctccttcgtcggcatgcacatggacgtcg 420 Query: 402 ttccggccaaccctagcgaatgggacttcgatcccttctcactaaccttcgaaggtgatg 461 | || |||||||| ||||||||| |||||||||||||||||||| || || |||| | Sbjct: 421 tccccgccaaccccgacgaatgggatttcgatcccttctcactaacgtttgacagtgaag 480 Query: 462 acaaggaaaagcttaggggccgcgggacgacggactgccttggtcatgtggcgctagtga 521 ||||||| || ||||||||||| ||||| || ||||||||||| ||||||||||| || Sbjct: 481 acaaggacaaacttaggggccgtgggacaaccgactgccttggccatgtggcgctggttg 540 Query: 522 ctcagctcatgcggcggcttggtgaggtgaaaccaccattgaagcattctgtcattgcgg 581 ||||||||||| || | ||||||||||| || || |||| ||||| |||||||||| Sbjct: 541 ctcagctcatgaggagacttggtgaggtcaagccggtgctgaaacattcggtcattgcgg 600 Query: 582 tgttcattgccaatgaagagaattcatcggtcactggcattggtgttgatggc 634 |||||||||||||||| || || ||| |||||||||||||||| |||||| Sbjct: 601 tgttcattgccaatgaggaaaactcacttatcactggcattggtgtcgatggc 653
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 422 bits (213), Expect = e-115 Identities = 288/313 (92%) Strand = Plus / Plus Query: 102 cgccgccgctcaaggacgccgtcggaggcctggaccgcgaccccttcgtcgccctcctcg 161 ||||| |||||| ||||||||| || ||||| |||||||||||||||||| ||||||||| Sbjct: 28381463 cgccgtcgctcagggacgccgtgggcggcctcgaccgcgaccccttcgtctccctcctcg 28381522 Query: 162 ccaagctgatcggcgagtcccagcgcctgcagaacgacccgccggccctcgttccgcagg 221 ||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 28381523 ggaagctcatcggcgagtcccgccgcctgcagaacgacccgccggccctcgtcccgcagg 28381582 Query: 222 aggacctcgtggcgcagcacgtggtcgacgcgctccgcccggtctcgacggaaaccgatg 281 |||||||||||||||||||||||||||||||||||| |||||| || | ||| |||| | Sbjct: 28381583 aggacctcgtggcgcagcacgtggtcgacgcgctcctcccggtgtccatggagaccgggg 28381642 Query: 282 gcggcccgctcgtcgtgcggaaggtgagctacaccgacggccggagcaacgtcatcgtcg 341 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct: 28381643 gcggcccgctcgtcgtgcggaaggtgagctacgccgagggccggagcaacgtcatcgtcg 28381702 Query: 342 agtaccccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacatggacgtcg 401 ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct: 28381703 agtaccccggcaccgtccccggccgcgccatctccttcgtcggcatgcacatggacgtcg 28381762 Query: 402 ttccggccaaccc 414 | || |||||||| Sbjct: 28381763 tccccgccaaccc 28381775 Score = 141 bits (71), Expect = 3e-30 Identities = 173/207 (83%) Strand = Plus / Plus Query: 428 ttcgatcccttctcactaaccttcgaaggtgatgacaaggaaaagcttaggggccgcggg 487 |||||||||||||||||||| || || |||| |||||||| || ||||||||||| ||| Sbjct: 28382305 ttcgatcccttctcactaacgtttgacagtgaagacaaggacaaacttaggggccgtggg 28382364 Query: 488 acgacggactgccttggtcatgtggcgctagtgactcagctcatgcggcggcttggtgag 547 || || ||||||||||| ||||||||||| || ||||||||||| || | ||||||||| Sbjct: 28382365 acaaccgactgccttggccatgtggcgctggttgctcagctcatgaggagacttggtgag 28382424 Query: 548 gtgaaaccaccattgaagcattctgtcattgcggtgttcattgccaatgaagagaattca 607 || || || |||| ||||| |||||||||||||||||||||||||| || || ||| Sbjct: 28382425 gtcaagccggtgctgaaacattcggtcattgcggtgttcattgccaatgaggaaaactca 28382484 Query: 608 tcggtcactggcattggtgttgatggc 634 |||||||||||||||| |||||| Sbjct: 28382485 cttatcactggcattggtgtcgatggc 28382511
>dbj|AP004118.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1148_D05 Length = 155146 Score = 422 bits (213), Expect = e-115 Identities = 288/313 (92%) Strand = Plus / Plus Query: 102 cgccgccgctcaaggacgccgtcggaggcctggaccgcgaccccttcgtcgccctcctcg 161 ||||| |||||| ||||||||| || ||||| |||||||||||||||||| ||||||||| Sbjct: 5584 cgccgtcgctcagggacgccgtgggcggcctcgaccgcgaccccttcgtctccctcctcg 5643 Query: 162 ccaagctgatcggcgagtcccagcgcctgcagaacgacccgccggccctcgttccgcagg 221 ||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 5644 ggaagctcatcggcgagtcccgccgcctgcagaacgacccgccggccctcgtcccgcagg 5703 Query: 222 aggacctcgtggcgcagcacgtggtcgacgcgctccgcccggtctcgacggaaaccgatg 281 |||||||||||||||||||||||||||||||||||| |||||| || | ||| |||| | Sbjct: 5704 aggacctcgtggcgcagcacgtggtcgacgcgctcctcccggtgtccatggagaccgggg 5763 Query: 282 gcggcccgctcgtcgtgcggaaggtgagctacaccgacggccggagcaacgtcatcgtcg 341 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct: 5764 gcggcccgctcgtcgtgcggaaggtgagctacgccgagggccggagcaacgtcatcgtcg 5823 Query: 342 agtaccccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacatggacgtcg 401 ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct: 5824 agtaccccggcaccgtccccggccgcgccatctccttcgtcggcatgcacatggacgtcg 5883 Query: 402 ttccggccaaccc 414 | || |||||||| Sbjct: 5884 tccccgccaaccc 5896 Score = 141 bits (71), Expect = 3e-30 Identities = 173/207 (83%) Strand = Plus / Plus Query: 428 ttcgatcccttctcactaaccttcgaaggtgatgacaaggaaaagcttaggggccgcggg 487 |||||||||||||||||||| || || |||| |||||||| || ||||||||||| ||| Sbjct: 6426 ttcgatcccttctcactaacgtttgacagtgaagacaaggacaaacttaggggccgtggg 6485 Query: 488 acgacggactgccttggtcatgtggcgctagtgactcagctcatgcggcggcttggtgag 547 || || ||||||||||| ||||||||||| || ||||||||||| || | ||||||||| Sbjct: 6486 acaaccgactgccttggccatgtggcgctggttgctcagctcatgaggagacttggtgag 6545 Query: 548 gtgaaaccaccattgaagcattctgtcattgcggtgttcattgccaatgaagagaattca 607 || || || |||| ||||| |||||||||||||||||||||||||| || || ||| Sbjct: 6546 gtcaagccggtgctgaaacattcggtcattgcggtgttcattgccaatgaggaaaactca 6605 Query: 608 tcggtcactggcattggtgttgatggc 634 |||||||||||||||| |||||| Sbjct: 6606 cttatcactggcattggtgtcgatggc 6632
>dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1743_B12 Length = 175645 Score = 422 bits (213), Expect = e-115 Identities = 288/313 (92%) Strand = Plus / Plus Query: 102 cgccgccgctcaaggacgccgtcggaggcctggaccgcgaccccttcgtcgccctcctcg 161 ||||| |||||| ||||||||| || ||||| |||||||||||||||||| ||||||||| Sbjct: 173220 cgccgtcgctcagggacgccgtgggcggcctcgaccgcgaccccttcgtctccctcctcg 173279 Query: 162 ccaagctgatcggcgagtcccagcgcctgcagaacgacccgccggccctcgttccgcagg 221 ||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 173280 ggaagctcatcggcgagtcccgccgcctgcagaacgacccgccggccctcgtcccgcagg 173339 Query: 222 aggacctcgtggcgcagcacgtggtcgacgcgctccgcccggtctcgacggaaaccgatg 281 |||||||||||||||||||||||||||||||||||| |||||| || | ||| |||| | Sbjct: 173340 aggacctcgtggcgcagcacgtggtcgacgcgctcctcccggtgtccatggagaccgggg 173399 Query: 282 gcggcccgctcgtcgtgcggaaggtgagctacaccgacggccggagcaacgtcatcgtcg 341 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct: 173400 gcggcccgctcgtcgtgcggaaggtgagctacgccgagggccggagcaacgtcatcgtcg 173459 Query: 342 agtaccccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacatggacgtcg 401 ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct: 173460 agtaccccggcaccgtccccggccgcgccatctccttcgtcggcatgcacatggacgtcg 173519 Query: 402 ttccggccaaccc 414 | || |||||||| Sbjct: 173520 tccccgccaaccc 173532 Score = 141 bits (71), Expect = 3e-30 Identities = 173/207 (83%) Strand = Plus / Plus Query: 428 ttcgatcccttctcactaaccttcgaaggtgatgacaaggaaaagcttaggggccgcggg 487 |||||||||||||||||||| || || |||| |||||||| || ||||||||||| ||| Sbjct: 174062 ttcgatcccttctcactaacgtttgacagtgaagacaaggacaaacttaggggccgtggg 174121 Query: 488 acgacggactgccttggtcatgtggcgctagtgactcagctcatgcggcggcttggtgag 547 || || ||||||||||| ||||||||||| || ||||||||||| || | ||||||||| Sbjct: 174122 acaaccgactgccttggccatgtggcgctggttgctcagctcatgaggagacttggtgag 174181 Query: 548 gtgaaaccaccattgaagcattctgtcattgcggtgttcattgccaatgaagagaattca 607 || || || |||| ||||| |||||||||||||||||||||||||| || || ||| Sbjct: 174182 gtcaagccggtgctgaaacattcggtcattgcggtgttcattgccaatgaggaaaactca 174241 Query: 608 tcggtcactggcattggtgttgatggc 634 |||||||||||||||| |||||| Sbjct: 174242 cttatcactggcattggtgtcgatggc 174268
>gb|AY104516.1| Zea mays PCO121857 mRNA sequence Length = 939 Score = 157 bits (79), Expect = 5e-35 Identities = 148/171 (86%) Strand = Plus / Plus Query: 464 aaggaaaagcttaggggccgcgggacgacggactgccttggtcatgtggcgctagtgact 523 ||||| || ||| |||| || ||||| || ||||| ||||| ||||| || || ||| || Sbjct: 22 aaggacaaacttcggggacgtgggacaaccgactgtcttggacatgtcgcactggtggct 81 Query: 524 cagctcatgcggcggcttggtgaggtgaaaccaccattgaagcattctgtcattgcggtg 583 ||||| |||||||||||||||||||| || ||||| |||| |||||||||||||| ||| Sbjct: 82 cagctaatgcggcggcttggtgaggtcaagccacccctgaaacattctgtcattgctgtg 141 Query: 584 ttcattgccaatgaagagaattcatcggtcactggcattggtgttgatggc 634 |||||||||||||| ||||| ||||| |||||||||||||||||||||||| Sbjct: 142 ttcattgccaatgaggagaactcatctgtcactggcattggtgttgatggc 192
>gb|BT017221.1| Zea mays clone EL01N0372H02.c mRNA sequence Length = 1252 Score = 145 bits (73), Expect = 2e-31 Identities = 103/113 (91%) Strand = Plus / Plus Query: 522 ctcagctcatgcggcggcttggtgaggtgaaaccaccattgaagcattctgtcattgcgg 581 ||||||| |||||||||||||||||||| || ||||| |||| |||||||||||||| | Sbjct: 9 ctcagctaatgcggcggcttggtgaggtcaagccacccctgaaacattctgtcattgctg 68 Query: 582 tgttcattgccaatgaagagaattcatcggtcactggcattggtgttgatggc 634 |||||||||||||||| ||||| ||||| |||||||||||||||||||||||| Sbjct: 69 tgttcattgccaatgaggagaactcatctgtcactggcattggtgttgatggc 121
>gb|AY023140.1| Oryza sativa microsatellite MRG5465 containing (GCC)X8, closest to marker R2216, genomic sequence Length = 224 Score = 75.8 bits (38), Expect = 2e-10 Identities = 65/74 (87%) Strand = Plus / Plus Query: 102 cgccgccgctcaaggacgccgtcggaggcctggaccgcgaccccttcgtcgccctcctcg 161 ||||| |||||| ||||||||| || ||||| |||||||||||||||||| ||||||||| Sbjct: 151 cgccgtcgctcagggacgccgtgggcggcctcgaccgcgaccccttcgtctccctcctcg 210 Query: 162 ccaagctgatcggc 175 ||||| |||||| Sbjct: 211 ggaagctcatcggc 224
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 73.8 bits (37), Expect = 6e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 345 accccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacat 393 |||||||||||||||| |||||||| ||||||||| ||||||||||||| Sbjct: 14734983 accccggcaccgtccctggccgcgttgtctccttcatcggcatgcacat 14735031 Score = 65.9 bits (33), Expect = 2e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 138 gcgaccccttcgtcgccctcctcgccaagctgatcggcgagtcccagcgcctgcagaacg 197 |||||||||| |||| ||||||| | ||||| | ||||||||||| | ||||||||||| Sbjct: 11074071 gcgacccctttgtcgtcctcctcacgaagctcaccggcgagtcccgccacctgcagaacg 11074130 Query: 198 acccgccggccct 210 |||| |||||||| Sbjct: 11074131 acccaccggccct 11074143 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/49 (91%), Gaps = 2/49 (4%) Strand = Plus / Plus Query: 345 accccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacat 393 |||||||||||||||| |||||||| |||||||| ||||||||||||| Sbjct: 11074155 accccggcaccgtccctggccgcgt--tctccttcatcggcatgcacat 11074201 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Plus Query: 140 gaccccttcgtcgccctcctcgccaagctgatcggcgagtcccagcgcctgcagaacga 198 |||||||| |||| ||||||| | ||||| | ||||||||||| | |||||||||||| Sbjct: 14734897 gacccctttgtcgtcctcctcacgaagcttaccggcgagtcccgccacctgcagaacga 14734955
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 73.8 bits (37), Expect = 6e-10 Identities = 46/49 (93%) Strand = Plus / Plus Query: 345 accccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacat 393 |||||||||||||||| |||||||| ||||||||| ||||||||||||| Sbjct: 14689268 accccggcaccgtccctggccgcgttgtctccttcatcggcatgcacat 14689316 Score = 65.9 bits (33), Expect = 2e-07 Identities = 63/73 (86%) Strand = Plus / Plus Query: 138 gcgaccccttcgtcgccctcctcgccaagctgatcggcgagtcccagcgcctgcagaacg 197 |||||||||| |||| ||||||| | ||||| | ||||||||||| | ||||||||||| Sbjct: 11073768 gcgacccctttgtcgtcctcctcacgaagctcaccggcgagtcccgccacctgcagaacg 11073827 Query: 198 acccgccggccct 210 |||| |||||||| Sbjct: 11073828 acccaccggccct 11073840 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/49 (91%), Gaps = 2/49 (4%) Strand = Plus / Plus Query: 345 accccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacat 393 |||||||||||||||| |||||||| |||||||| ||||||||||||| Sbjct: 11073852 accccggcaccgtccctggccgcgt--tctccttcatcggcatgcacat 11073898 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Plus Query: 140 gaccccttcgtcgccctcctcgccaagctgatcggcgagtcccagcgcctgcagaacga 198 |||||||| |||| ||||||| | ||||| | ||||||||||| | |||||||||||| Sbjct: 14689182 gacccctttgtcgtcctcctcacgaagcttaccggcgagtcccgccacctgcagaacga 14689240
>emb|AL954159.4|CNS08CCX Oryza sativa chromosome 12, . BAC OSJNBa0057C04 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131673 Score = 73.8 bits (37), Expect = 6e-10 Identities = 46/49 (93%) Strand = Plus / Minus Query: 345 accccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacat 393 |||||||||||||||| |||||||| ||||||||| ||||||||||||| Sbjct: 9102 accccggcaccgtccctggccgcgttgtctccttcatcggcatgcacat 9054 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Minus Query: 140 gaccccttcgtcgccctcctcgccaagctgatcggcgagtcccagcgcctgcagaacga 198 |||||||| |||| ||||||| | ||||| | ||||||||||| | |||||||||||| Sbjct: 9188 gacccctttgtcgtcctcctcacgaagcttaccggcgagtcccgccacctgcagaacga 9130
>emb|AL928751.2|CNS08CBO Oryza sativa chromosome 12, . BAC OSJNBa0037B01 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 133207 Score = 73.8 bits (37), Expect = 6e-10 Identities = 46/49 (93%) Strand = Plus / Minus Query: 345 accccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacat 393 |||||||||||||||| |||||||| ||||||||| ||||||||||||| Sbjct: 83815 accccggcaccgtccctggccgcgttgtctccttcatcggcatgcacat 83767 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Minus Query: 140 gaccccttcgtcgccctcctcgccaagctgatcggcgagtcccagcgcctgcagaacga 198 |||||||| |||| ||||||| | ||||| | ||||||||||| | |||||||||||| Sbjct: 83901 gacccctttgtcgtcctcctcacgaagcttaccggcgagtcccgccacctgcagaacga 83843
>emb|AL831796.5|CNS08CA9 Oryza sativa chromosome 12, . BAC OSJNBa0012G19 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 157771 Score = 65.9 bits (33), Expect = 2e-07 Identities = 63/73 (86%) Strand = Plus / Minus Query: 138 gcgaccccttcgtcgccctcctcgccaagctgatcggcgagtcccagcgcctgcagaacg 197 |||||||||| |||| ||||||| | ||||| | ||||||||||| | ||||||||||| Sbjct: 112106 gcgacccctttgtcgtcctcctcacgaagctcaccggcgagtcccgccacctgcagaacg 112047 Query: 198 acccgccggccct 210 |||| |||||||| Sbjct: 112046 acccaccggccct 112034 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/49 (91%), Gaps = 2/49 (4%) Strand = Plus / Minus Query: 345 accccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacat 393 |||||||||||||||| |||||||| |||||||| ||||||||||||| Sbjct: 112022 accccggcaccgtccctggccgcgt--tctccttcatcggcatgcacat 111976
>emb|AL844875.4|CNS08CAY Oryza sativa chromosome 12, . BAC OSJNBb0032I14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 134082 Score = 65.9 bits (33), Expect = 2e-07 Identities = 63/73 (86%) Strand = Plus / Minus Query: 138 gcgaccccttcgtcgccctcctcgccaagctgatcggcgagtcccagcgcctgcagaacg 197 |||||||||| |||| ||||||| | ||||| | ||||||||||| | ||||||||||| Sbjct: 31504 gcgacccctttgtcgtcctcctcacgaagctcaccggcgagtcccgccacctgcagaacg 31445 Query: 198 acccgccggccct 210 |||| |||||||| Sbjct: 31444 acccaccggccct 31432 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/49 (91%), Gaps = 2/49 (4%) Strand = Plus / Minus Query: 345 accccggcaccgtccccggccgcgtcgtctccttcgtcggcatgcacat 393 |||||||||||||||| |||||||| |||||||| ||||||||||||| Sbjct: 31420 accccggcaccgtccctggccgcgt--tctccttcatcggcatgcacat 31374
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 214 tccgcaggaggacctcgtggcg 235 |||||||||||||||||||||| Sbjct: 3118728 tccgcaggaggacctcgtggcg 3118749
>gb|AC183492.1| Brassica oleracea Contig G, complete sequence Length = 236640 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 377 ttcgtcggcatgcacatggacgtcgt 402 |||||||| ||||||||||||||||| Sbjct: 178263 ttcgtcggaatgcacatggacgtcgt 178288
>gb|DQ168848.1| Pseudomonas cichorii strain 83-1 pathogenicity island, partial sequence Length = 55569 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 572 gtcattgcggtgttcattgccaatg 596 ||||||||||||||| ||||||||| Sbjct: 32794 gtcattgcggtgttcgttgccaatg 32770
>gb|AF525618.1| Halimeda minima strain 99-075 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 1738 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 253 gctccgcccggtctcgacgga 273 ||||||||||||||||||||| Sbjct: 1642 gctccgcccggtctcgacgga 1662
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 gcgcagcacgtggtcgacgcgctcc 257 |||||||||| |||||||||||||| Sbjct: 4990110 gcgcagcacgcggtcgacgcgctcc 4990134
>gb|AE012210.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 118 of 460 of the complete genome Length = 10029 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 gcagcacgtggtcgacgcgct 255 ||||||||||||||||||||| Sbjct: 8297 gcagcacgtggtcgacgcgct 8317
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 gcagcacgtggtcgacgcgct 255 ||||||||||||||||||||| Sbjct: 3742451 gcagcacgtggtcgacgcgct 3742431
>gb|AF192796.1|AF192796 Ehrlichia phagocytophila GroEL (groEL) gene, partial cds Length = 1256 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 459 atgacaaggaaaagcttaggg 479 ||||||||||||||||||||| Sbjct: 1132 atgacaaggaaaagcttaggg 1152
>gb|AY649379.1| Halimeda minima voucher WLS169-02 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 436 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 253 gctccgcccggtctcgacgga 273 ||||||||||||||||||||| Sbjct: 340 gctccgcccggtctcgacgga 360
>gb|AY649378.1| Halimeda minima voucher WLS193-02 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 436 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 253 gctccgcccggtctcgacgga 273 ||||||||||||||||||||| Sbjct: 340 gctccgcccggtctcgacgga 360
>ref|NM_184324.1| Oryza sativa (japonica cultivar-group), mRNA Length = 765 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 catctccggcgccgccgctc 112 |||||||||||||||||||| Sbjct: 162 catctccggcgccgccgctc 143
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 378 tcgtcggcatgcacatggacgtcg 401 ||||||||||||||||||| |||| Sbjct: 1372223 tcgtcggcatgcacatggaggtcg 1372200
>ref|NM_193298.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 948 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 gccgctcaaggacgccgtcg 125 |||||||||||||||||||| Sbjct: 63 gccgctcaaggacgccgtcg 82
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 gcagaacgacccgccggccctcgt 213 |||||| ||||||||||||||||| Sbjct: 1310044 gcagaatgacccgccggccctcgt 1310021
>ref|XM_369812.1| Magnaporthe grisea 70-15 hypothetical protein (MG06327.4) partial mRNA Length = 1425 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 ccgccggccctcgttccgca 219 |||||||||||||||||||| Sbjct: 1062 ccgccggccctcgttccgca 1081
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 ccggcgccgccgctcaagga 117 |||||||||||||||||||| Sbjct: 134038 ccggcgccgccgctcaagga 134019
>gb|AC132125.3| Mus musculus BAC clone RP23-369L24 from chromosome 13, complete sequence Length = 101318 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 600 agaattcatcggtcactggc 619 |||||||||||||||||||| Sbjct: 91505 agaattcatcggtcactggc 91486
>ref|XM_806331.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053507105.80) partial mRNA Length = 924 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cttcgtcgccctcctcgcca 164 |||||||||||||||||||| Sbjct: 835 cttcgtcgccctcctcgcca 816
>emb|CR932963.2| Medicago truncatula chromosome 5 clone mth2-115p22, COMPLETE SEQUENCE Length = 133910 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 333 tcatcgtcgagtaccccggcaccgtccccggc 364 |||||||||||||||| || ||||| |||||| Sbjct: 33315 tcatcgtcgagtaccctggtaccgttcccggc 33346
>emb|CR407097.1| Gallus gallus finished cDNA, clone ChEST751e3 Length = 864 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 343 gtaccccggcaccgtccccggccgcgtc 370 |||||| ||| ||||||||||||||||| Sbjct: 53 gtaccctggctccgtccccggccgcgtc 26
>emb|BX930138.2| Gallus gallus finished cDNA, clone ChEST1017m21 Length = 851 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 343 gtaccccggcaccgtccccggccgcgtc 370 |||||| ||| ||||||||||||||||| Sbjct: 69 gtaccctggctccgtccccggccgcgtc 42
>gb|BC004387.1|BC004387 Homo sapiens, Similar to hypothetical protein PRO1722, clone IMAGE:3619551, mRNA Length = 2732 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 gacttcgatcccttctcact 444 |||||||||||||||||||| Sbjct: 723 gacttcgatcccttctcact 742
>emb|CR354031.1| Gallus gallus finished cDNA, clone ChEST462a22 Length = 849 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 343 gtaccccggcaccgtccccggccgcgtc 370 |||||| ||| ||||||||||||||||| Sbjct: 152 gtaccctggctccgtccccggccgcgtc 125
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 gccgctcaaggacgccgtcg 125 |||||||||||||||||||| Sbjct: 19968255 gccgctcaaggacgccgtcg 19968274 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 catctccggcgccgccgctc 112 |||||||||||||||||||| Sbjct: 2354788 catctccggcgccgccgctc 2354769
>emb|BX931237.1| Gallus gallus finished cDNA, clone ChEST258n9 Length = 848 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 343 gtaccccggcaccgtccccggccgcgtc 370 |||||| ||| ||||||||||||||||| Sbjct: 65 gtaccctggctccgtccccggccgcgtc 38
>dbj|AP004361.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0062A24 Length = 148362 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 gccgctcaaggacgccgtcg 125 |||||||||||||||||||| Sbjct: 71164 gccgctcaaggacgccgtcg 71183
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 cgcagcacgtggtcgacgcg 253 |||||||||||||||||||| Sbjct: 5854762 cgcagcacgtggtcgacgcg 5854743
>dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0024G09 Length = 175565 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 catctccggcgccgccgctc 112 |||||||||||||||||||| Sbjct: 83838 catctccggcgccgccgctc 83819
>dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0019D06 Length = 167405 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 catctccggcgccgccgctc 112 |||||||||||||||||||| Sbjct: 138372 catctccggcgccgccgctc 138353
>ref|XM_551134.1| Anopheles gambiae str. PEST ENSANGP00000028284 (ENSANGG00000019667), partial mRNA Length = 9543 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 363 gccgcgtcgtctccttcgtcggca 386 |||||||||||||| ||||||||| Sbjct: 3562 gccgcgtcgtctccgtcgtcggca 3539
>ref|XM_321424.2| Anopheles gambiae str. PEST ENSANGP00000022156 (ENSANGG00000019667), partial mRNA Length = 13383 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 363 gccgcgtcgtctccttcgtcggca 386 |||||||||||||| ||||||||| Sbjct: 7297 gccgcgtcgtctccgtcgtcggca 7274
>gb|AC006538.1|AC006538 Homo sapiens chromosome 19, BAC 41195 (CIT-B-31c16), complete sequence Length = 177540 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 gacttcgatcccttctcact 444 |||||||||||||||||||| Sbjct: 8749 gacttcgatcccttctcact 8730 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,607,353 Number of Sequences: 3902068 Number of extensions: 3607353 Number of successful extensions: 74444 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73592 Number of HSP's gapped (non-prelim): 841 length of query: 634 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 611 effective length of database: 17,143,297,704 effective search space: 10474554897144 effective search space used: 10474554897144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
