ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63m11 |
|---|---|
| Clone Library Name | barley_pub |
>PRP46_YEAST (Q12417) Pre-mRNA-splicing factor PRP46 (Pre-mRNA-processing| protein 46) (Complexed with CEF1 protein 1) (PRP19-associated complex protein 50) (PRP nineteen-associated complex protein 50) Length = 451 Score = 35.0 bits (79), Expect = 0.17 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 8/79 (10%) Frame = +1 Query: 217 DSRELVPKISLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWDTVTFKEIRRI---- 384 D R +P I+L H G + V+ + V PQ+++ D T+ +WD V K ++ + Sbjct: 252 DMRTRIPVITLVGHKGPINQVQCTPV---DPQVVSSSTDATVRLWDVVAGKTMKVLTHHK 308 Query: 385 KPVPKLACH----SVASWC 429 + V A H SVAS C Sbjct: 309 RSVRATALHPKEFSVASAC 327
>WDR57_MOUSE (Q6PE01) WD-repeat protein 57| Length = 358 Score = 34.7 bits (78), Expect = 0.22 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Frame = +1 Query: 244 SLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWDTVTFKEIRRIKPVPKLACHSVAS 423 +LK H G V+ + + L + DKT+A+WD+ T + ++R+K S + Sbjct: 105 TLKGHSGAVMELHYNT---DGSMLFSASTDKTVAVWDSETGERVKRLK-----GHTSFVN 156 Query: 424 WCHP--RAPNL 450 C+P R P L Sbjct: 157 SCYPARRGPQL 167
>WDR57_HUMAN (Q96DI7) WD-repeat protein 57 (Prp8-binding protein) (hPRP8BP) (U5| snRNP-specific 40 kDa protein) (38 kDa splicing factor) Length = 357 Score = 34.7 bits (78), Expect = 0.22 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Frame = +1 Query: 244 SLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWDTVTFKEIRRIKPVPKLACHSVAS 423 +LK H G V+ + + L + DKT+A+WD+ T + ++R+K S + Sbjct: 104 TLKGHSGAVMELHYNT---DGSMLFSASTDKTVAVWDSETGERVKRLK-----GHTSFVN 155 Query: 424 WCHP--RAPNL 450 C+P R P L Sbjct: 156 SCYPARRGPQL 166
>KMHA_DICDI (P42527) Myosin heavy chain kinase A (EC 2.7.11.7) (MHCK A)| Length = 1146 Score = 33.9 bits (76), Expect = 0.37 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 3/128 (2%) Frame = +1 Query: 19 LVAFGASDGVIRVLSMM-TWKLVRRYTGGHKG--AISCLMTFMSAAGEXXXXXXXXXXXX 189 L+ G DG RV + WK + G K +I+C ++ + Sbjct: 883 LLCAGYGDGTYRVFDVNDNWKCLYTVNGHRKSIESIACNSNYIFTSSPDNTIKV------ 936 Query: 190 XXXXADHIHDSRELVPKISLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWDTVTFK 369 HI S +L H G E++ V+ + L + DKT+ +WD TFK Sbjct: 937 ------HIIRSGNTKCIETLVGHTG-----EVNCVVANEKYLFSCSYDKTIKVWDLSTFK 985 Query: 370 EIRRIKPV 393 EI+ + V Sbjct: 986 EIKSFEGV 993
>PRP46_YARLI (Q6C709) Pre-mRNA-splicing factor PRP46 (Pre-mRNA-processing| protein 46) Length = 472 Score = 33.9 bits (76), Expect = 0.37 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 5/118 (4%) Frame = +1 Query: 16 PLVAFGASDGVIRVLSMMTWKLVRRYTGGHKGAISCL-----MTFMSAAGEXXXXXXXXX 180 P + G D +++ + T K+VR Y G H A+ L + + +AG Sbjct: 218 PYMFSGGEDKMVKCWDLETNKVVRHYHG-HLSAVYSLDIHPTLDVLVSAGRDAVA----- 271 Query: 181 XXXXXXXADHIHDSRELVPKISLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWD 354 + D R P + L H + V+ S PQ+IT AD+T+ +W+ Sbjct: 272 ---------RVWDIRTRDPVVVLSGHKSTINRVKFQ---ASEPQVITASADETVRLWN 317
>WDR1_CHICK (O93277) WD-repeat protein 1 (Actin-interacting protein 1) (AIP1)| Length = 609 Score = 33.9 bits (76), Expect = 0.37 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = +1 Query: 250 KAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWD 354 KAHDGG+ A+ S + QL++ DKT IWD Sbjct: 233 KAHDGGIYAISWSP---DSSQLLSASGDKTAKIWD 264
>WDR1_XENLA (Q9W7F2) WD-repeat protein 1 (Actin-interacting protein 1) (XAIP1)| Length = 608 Score = 33.9 bits (76), Expect = 0.37 Identities = 17/35 (48%), Positives = 20/35 (57%) Frame = +1 Query: 250 KAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWD 354 KAHDGG+ AV S QL++ DKT IWD Sbjct: 231 KAHDGGIYAVSWS---PDGTQLLSASGDKTTKIWD 262
>UTP7_YEAST (P40055) U3 small nucleolar RNA-associated protein 7 (U3| snoRNA-associated protein 7) Length = 554 Score = 33.5 bits (75), Expect = 0.48 Identities = 16/54 (29%), Positives = 30/54 (55%) Frame = +1 Query: 235 PKISLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWDTVTFKEIRRIKPVP 396 P + L + G V ++ + R S + T GAD+++ IWD FK++ ++ +P Sbjct: 266 PLVKLLSARGPVNSIAIDR---SGYYMATTGADRSMKIWDIRNFKQLHSVESLP 316
>YNA6_YEAST (P41318) Hypothetical 34.0 kDa Trp-Asp repeats-containing protein| in SIS1-MRPL2 intergenic region Length = 303 Score = 33.5 bits (75), Expect = 0.48 Identities = 14/38 (36%), Positives = 25/38 (65%) Frame = +1 Query: 4 SSDAPLVAFGASDGVIRVLSMMTWKLVRRYTGGHKGAI 117 S+D+ + +SD +R+ + T ++VR+Y G HKGA+ Sbjct: 259 SADSAYLVTASSDHYVRLWDLSTREIVRQYGGHHKGAV 296
>WDR8_HUMAN (Q9P2S5) WD-repeat protein 8| Length = 460 Score = 33.1 bits (74), Expect = 0.63 Identities = 14/39 (35%), Positives = 25/39 (64%) Frame = +1 Query: 4 SSDAPLVAFGASDGVIRVLSMMTWKLVRRYTGGHKGAIS 120 S + +A G+ DG +R+L+ +TWK++ + GH AI+ Sbjct: 232 SPSSQFLAVGSYDGKVRILNHVTWKMITEF--GHPAAIN 268
>RAE1_SCHPO (P41838) Poly(A)+ RNA export protein| Length = 352 Score = 32.7 bits (73), Expect = 0.82 Identities = 16/34 (47%), Positives = 18/34 (52%) Frame = +1 Query: 253 AHDGGVVAVELSRVMGSAPQLITIGADKTLAIWD 354 AHD V V MG++P L T DKTL WD Sbjct: 113 AHDDAVRCVRFVEAMGTSPILATGSWDKTLKYWD 146
>WDR57_PONPY (Q5RF51) WD-repeat protein 57| Length = 357 Score = 32.3 bits (72), Expect = 1.1 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Frame = +1 Query: 244 SLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWDTVTFKEIRRIKPVPKLACHSVAS 423 +LK + G V+ + + L + DKT+A+WD+ T + ++R+K S + Sbjct: 104 TLKGYSGAVMELHYNT---DGSMLFSASTDKTVAVWDSETGERVKRLK-----GHTSFVN 155 Query: 424 WCHP--RAPNL 450 C+P R P L Sbjct: 156 SCYPARRGPQL 166
>WDR41_MOUSE (Q3UDP0) WD-repeat protein 41| Length = 460 Score = 32.3 bits (72), Expect = 1.1 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 5/87 (5%) Frame = +1 Query: 241 ISLKAHDGGVVAV----ELSRVMGSAPQLITIGADKTLAIWDTVTFKEIRRIKPVPKLAC 408 + L+ H + AV L S+ L+T AD+T+ +WD T ++I+R+ C Sbjct: 78 LELRGHTQKITAVIAFPPLDSCEASSQLLLTASADRTVGVWDCDTGRQIQRV------TC 131 Query: 409 HSVASWCHPRAPNLDI-LTCVKDSHIW 486 C LDI L+ D +W Sbjct: 132 FQSTVKCLTVLQRLDIWLSGGSDLGVW 158
>AAC3_DICDI (P14197) AAC-rich mRNA clone AAC3 protein (Fragment)| Length = 437 Score = 32.3 bits (72), Expect = 1.1 Identities = 24/92 (26%), Positives = 38/92 (41%) Frame = +1 Query: 241 ISLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWDTVTFKEIRRIKPVPKLACHSVA 420 I LK HDG + + S L + G DK + IWD ++ K + ++ +S Sbjct: 181 IELKGHDGSIEKISWSPKNNDL--LASAGTDKVIKIWD------VKIGKCIGTVSTNSEN 232 Query: 421 SWCHPRAPNLDILTCVKDSHIWAIEHPTYSAL 516 I+ C +D H+ I+ PT L Sbjct: 233 IDVRWSPDGQFIVACTRDDHLALIDLPTIKTL 264
>ECTD_STRCH (Q6QUY7) Ectoine hydroxylase (EC 1.17.-.-)| Length = 297 Score = 32.0 bits (71), Expect = 1.4 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 8/67 (11%) Frame = -3 Query: 527 SGLVKAE*VGCSMAQIWESLTQVRISR------FGARG--WHQDATLWQASLGTGLMRLI 372 +GLV+ E V QI S V SR FGA G WH D W A G MR + Sbjct: 107 AGLVRDERVVGRARQILGSDVYVHQSRINVKPGFGATGFYWHSDFETWHAEDGLPNMRTV 166 Query: 371 SLNVTVS 351 S+++ ++ Sbjct: 167 SVSIALT 173
>PRP46_CANGA (Q6FJZ9) Pre-mRNA-splicing factor PRP46 (Pre-mRNA-processing| protein 46) Length = 427 Score = 32.0 bits (71), Expect = 1.4 Identities = 16/56 (28%), Positives = 29/56 (51%) Frame = +1 Query: 211 IHDSRELVPKISLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWDTVTFKEIR 378 + D R +P ++L H G + V R + PQ+I+ D ++ +WD V K ++ Sbjct: 226 VWDIRTRLPVMTLPGHKGPITKV---RCLPVDPQVISSSVDASIRLWDLVAGKSMK 278
>COPB2_SCHPO (O42937) Probable coatomer subunit beta' (Beta'-coat protein)| (Beta'-COP) Length = 796 Score = 32.0 bits (71), Expect = 1.4 Identities = 18/44 (40%), Positives = 22/44 (50%) Frame = +1 Query: 232 VPKISLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWDTVT 363 V +L+AHD GV V G P LIT G D + +WD T Sbjct: 175 VANFTLQAHDRGVNYVNYYPA-GDKPYLITAGDDNLIKVWDYQT 217
>YL783_MIMIV (Q5UPS2) Putative BTB/POZ domain and WD-repeat protein R783| Length = 527 Score = 31.6 bits (70), Expect = 1.8 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Frame = +1 Query: 244 SLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWDTVTFKEIR-RIKPVPKLACHS 414 ++K H + + +S V S Q +TIG D + IW+ T+ +R I PV + C+S Sbjct: 310 TVKKHKNTITGIHVSPVNDS--QFVTIGRDDRICIWNAKTYNIVRCMISPVDCI-CYS 364
>WDR1_MOUSE (O88342) WD-repeat protein 1 (Actin-interacting protein 1) (AIP1)| Length = 605 Score = 31.6 bits (70), Expect = 1.8 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +1 Query: 250 KAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWD 354 KAHDGG+ A+ S + L++ DKT IWD Sbjct: 230 KAHDGGIYAISWS---PDSTHLLSASGDKTSKIWD 261
>WDR1_HUMAN (O75083) WD-repeat protein 1 (Actin-interacting protein 1) (AIP1)| (NORI-1) Length = 605 Score = 31.6 bits (70), Expect = 1.8 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +1 Query: 250 KAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWD 354 KAHDGG+ A+ S + L++ DKT IWD Sbjct: 230 KAHDGGIYAISWS---PDSTHLLSASGDKTSKIWD 261
>YDSB_SCHPO (O14186) Hypothetical WD-repeat protein C4F8.11 in chromosome I| Length = 846 Score = 31.2 bits (69), Expect = 2.4 Identities = 17/47 (36%), Positives = 27/47 (57%) Frame = +1 Query: 232 VPKISLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWDTVTFKE 372 +P + L AH+G V+ V S + L + G DKT+ IWD+ + K+ Sbjct: 212 LPFLKLAAHNGVVLCVNYSP---NGVFLASCGRDKTIRIWDSTSNKK 255
>WDR1_DROME (Q9VU68) Putative actin-interacting protein 1 (AIP1)| Length = 608 Score = 31.2 bits (69), Expect = 2.4 Identities = 20/52 (38%), Positives = 27/52 (51%) Frame = +1 Query: 220 SRELVPKISLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWDTVTFKEI 375 S ELV + AH GGV A+ + QL+T DKT +W TV +E+ Sbjct: 226 SSELVGEFGSPAHKGGVYALAWK---PDSTQLLTCSGDKTCRLW-TVESREL 273
>CB024_RAT (Q6P7B2) Protein C2orf24 homolog| Length = 408 Score = 30.4 bits (67), Expect = 4.1 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 10/69 (14%) Frame = -3 Query: 437 RGWHQ--------DATLWQASLGTGLMRLISLN--VTVSHMAKVLSAPIVMSCGALPITL 288 RGW+ + +WQ SLG+ RL+ L+ + V++++ V A M+ + L Sbjct: 200 RGWYTYTDLCVLLEQPMWQLSLGSLCQRLVKLSCLLAVAYVSSVALAVASMAVIHQSLGL 259 Query: 287 ESSTATTPP 261 SS + +PP Sbjct: 260 SSSPSPSPP 268
>CDC12_SCHPO (Q10059) Cell division control protein 12| Length = 1841 Score = 30.4 bits (67), Expect = 4.1 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 16/98 (16%) Frame = -3 Query: 359 TVSHMAKVLSAPIVMSCGALPITLESSTATTPPS*AFKLILGTSSRESWI*SALHNTS-- 186 TVS+ +K+ + I +LP + T PP K L T S + ++TS Sbjct: 879 TVSNNSKITNFDIPNDATSLPTIITHPTPPPPPPLPVKTSLNTFSHPDSVNIVANDTSVA 938 Query: 185 --RPSLPPET------------KCTSPAADMNVIKQDI 114 P+ PP K SPA N+ K D+ Sbjct: 939 GVMPAFPPPPPPPPPLVSAAGGKFVSPAVSNNISKDDL 976
>PRP46_CANAL (Q5A7Q3) Pre-mRNA-splicing factor PRP46 (Pre-mRNA-processing| protein 46) Length = 389 Score = 30.4 bits (67), Expect = 4.1 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 10/75 (13%) Frame = +1 Query: 211 IHDSRELVPKISLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWD----------TV 360 + D R V ++L H + ++E + PQ+IT D T+ +WD T Sbjct: 201 VWDIRSRVEAMTLLGHTNDITSIETDY---NDPQVITSSMDGTIRLWDLRKSKTELLITN 257 Query: 361 TFKEIRRIKPVPKLA 405 K IR +K PK A Sbjct: 258 HSKSIRSMKSHPKEA 272
>IF32_ARATH (Q38884) Eukaryotic translation initiation factor 3 subunit 2| (eIF-3 beta) (eIF3 p36) (eIF3i) (TGF-beta receptor-interacting protein 1) (TRIP-1) Length = 328 Score = 30.4 bits (67), Expect = 4.1 Identities = 16/46 (34%), Positives = 26/46 (56%) Frame = +1 Query: 250 KAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWDTVTFKEIRRIK 387 + H+G V ++SR + +LIT AD+T +WD + KE+ K Sbjct: 49 RGHNGAVWCCDVSR---DSSRLITGSADQTAKLWDVKSGKELFTFK 91
>PLRG1_MOUSE (Q922V4) Pleiotropic regulator 1| Length = 513 Score = 30.0 bits (66), Expect = 5.3 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +1 Query: 238 KISLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWDTVTFK 369 K S+ G AV R + PQ+IT D T+ +WD V K Sbjct: 319 KASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGK 362
>HAT2_SCHPO (O94244) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)| Length = 430 Score = 30.0 bits (66), Expect = 5.3 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 4/52 (7%) Frame = +1 Query: 211 IHDSR----ELVPKISLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWD 354 IHD+R E PK+ ++AH + AV ++ L T ADKT+A+WD Sbjct: 262 IHDTRLNPEEEAPKV-IQAHSKAINAVAINPFNDYL--LATASADKTVALWD 310
>PLRG1_RAT (Q9WUC8) Pleiotropic regulator 1| Length = 514 Score = 30.0 bits (66), Expect = 5.3 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +1 Query: 238 KISLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWDTVTFK 369 K S+ G AV R + PQ+IT D T+ +WD V K Sbjct: 320 KASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGK 363
>PLRG1_HUMAN (O43660) Pleiotropic regulator 1| Length = 514 Score = 30.0 bits (66), Expect = 5.3 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +1 Query: 238 KISLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWDTVTFK 369 K S+ G AV R + PQ+IT D T+ +WD V K Sbjct: 320 KASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGK 363
>DIP2_YEAST (Q12220) DOM34-interacting protein 2 (U3 small nucleolar| RNA-associated protein 12) (U3 snoRNA-associated protein 12) Length = 943 Score = 30.0 bits (66), Expect = 5.3 Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 1/159 (0%) Frame = +1 Query: 4 SSDAPLVAFGASDGVIRVLSMMTWKLVRRYTGGHKGAISCLMTFMSAAGEXXXXXXXXXX 183 S D L+A AS+G +++ ++ T K +R + G+ A++C F+ Sbjct: 400 SDDNKLLAT-ASNGSLKIWNIKTHKCIRTFECGY--ALTC--KFLPGGLLVILGTRNGEL 454 Query: 184 XXXXXXADHIHDSRELVPKISLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWDTVT 363 + + D+ E AHD + +++L+ +L+T ADKT+ WD Sbjct: 455 QLFDLASSSLLDTIE-------DAHDAAIWSLDLT---SDGKRLVTGSADKTVKFWD--- 501 Query: 364 FKEIRRIKPVPKLACHSVASWCHPRAPNL-DILTCVKDS 477 FK + P K V H L D + CV+ S Sbjct: 502 FKVENSLVPGTKNKFLPVLKLHHDTTLELTDDILCVRVS 540
>POP3_SCHPO (O74184) WD-repeat protein pop3 (WD-repeat protein wat1)| Length = 314 Score = 30.0 bits (66), Expect = 5.3 Identities = 12/38 (31%), Positives = 24/38 (63%) Frame = +1 Query: 4 SSDAPLVAFGASDGVIRVLSMMTWKLVRRYTGGHKGAI 117 S+D+ + +SD V R+ + + + +R+Y+G HK A+ Sbjct: 268 SADSTYLVTASSDHVARLWELSSGETIRQYSGHHKAAV 305
>KTNB1_STRPU (O61585) Katanin p80 WD40-containing subunit B1 (Katanin p80| subunit B1) (p80 katanin) Length = 690 Score = 30.0 bits (66), Expect = 5.3 Identities = 29/128 (22%), Positives = 47/128 (36%) Frame = +1 Query: 4 SSDAPLVAFGASDGVIRVLSMMTWKLVRRYTGGHKGAISCLMTFMSAAGEXXXXXXXXXX 183 +S LV G+ G +++ + K+VR TG H+ +I C+ GE Sbjct: 68 NSSEELVVAGSQSGTMKIYDLEPAKIVRTLTG-HRNSIRCMD--FHPFGEFVASGSTDTN 124 Query: 184 XXXXXXADHIHDSRELVPKISLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWDTVT 363 + D R + K H V ++ S L+T D T+ +WD Sbjct: 125 VK-------LWDVRRKGCIYTYKGHSDQVNMIKFSP---DGKWLVTASEDTTIKLWDLTM 174 Query: 364 FKEIRRIK 387 K + K Sbjct: 175 GKLFQEFK 182
>PWP1_MOUSE (Q99LL5) Periodic tryptophan protein 1 homolog| Length = 501 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/46 (34%), Positives = 25/46 (54%) Frame = +1 Query: 217 DSRELVPKISLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWD 354 D+R P +L AH+ + ++LS + L+T ADK + IWD Sbjct: 370 DARSDKPIFTLNAHNDEISGLDLSSQIKGC--LVTASADKFVKIWD 413
>PWP1_HUMAN (Q13610) Periodic tryptophan protein 1 homolog (Keratinocyte| protein IEF SSP 9502) Length = 501 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/46 (34%), Positives = 25/46 (54%) Frame = +1 Query: 217 DSRELVPKISLKAHDGGVVAVELSRVMGSAPQLITIGADKTLAIWD 354 D+R P +L AH+ + ++LS + L+T ADK + IWD Sbjct: 371 DARSDKPIFTLNAHNDEISGLDLSSQIKGC--LVTASADKYVKIWD 414
>ECTD_STRCO (Q93RV9) Ectoine hydroxylase (EC 1.17.-.-)| Length = 299 Score = 29.6 bits (65), Expect = 6.9 Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 8/65 (12%) Frame = -3 Query: 521 LVKAE*VGCSMAQIWESLTQVRISR------FGARG--WHQDATLWQASLGTGLMRLISL 366 LV+ E V QI S V SR FGA G WH D W A G MR IS+ Sbjct: 111 LVRDERVVGRARQILGSDVYVHQSRINVKPGFGASGFYWHSDFETWHAEDGLPNMRTISV 170 Query: 365 NVTVS 351 ++ ++ Sbjct: 171 SIALT 175
>ECTD_STRAW (Q829L6) Ectoine hydroxylase (EC 1.17.-.-)| Length = 295 Score = 29.3 bits (64), Expect = 9.1 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 8/65 (12%) Frame = -3 Query: 521 LVKAE*VGCSMAQIWESLTQVRISR------FGARG--WHQDATLWQASLGTGLMRLISL 366 LV+ E V QI S V SR FGA G WH D W A G MR +S+ Sbjct: 107 LVRDERVVGRARQILGSDVYVHQSRINVKPGFGASGFYWHSDFETWHAEDGLPNMRTVSV 166 Query: 365 NVTVS 351 ++ ++ Sbjct: 167 SIALT 171
>ADMR_HUMAN (O15218) Adrenomedullin receptor (AM-R)| Length = 404 Score = 29.3 bits (64), Expect = 9.1 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = -3 Query: 410 WQASLGTGLMRLISLNVTVSHMAKVLSAPIVMSCGALPITLE 285 W+ S GLM L LN+ ++ + VLS P+ M L +TL+ Sbjct: 79 WRGSGRAGLMNLYILNMAIADLGIVLSLPVWM----LEVTLD 116 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,548,374 Number of Sequences: 219361 Number of extensions: 1973083 Number of successful extensions: 5144 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 4867 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5138 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
