ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63m11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK111686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170K17, full insert sequence Length = 4534 Score = 779 bits (393), Expect = 0.0 Identities = 549/601 (91%) Strand = Plus / Plus Query: 1 tcttctagtgatgcccctcttgttgcattcggggcatctgatggtgtgattagagttctc 60 ||||||||||| || ||||| |||||||| || | |||||||| ||||| |||||||| Sbjct: 685 tcttctagtgacgctcctctggttgcatttggatcttctgatggagtgataagagttctt 744 Query: 61 tcaatgatgacatggaagcttgttcgaaggtatactggtggacataaaggagcaatatct 120 |||||| |||||||||||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct: 745 tcaatgctgacatggaagcttgtgcgaaggtatacaggtggacacaaaggagcaatatct 804 Query: 121 tgcttaatgacattcatgtctgcagccggcgaggtacatttagtttctggtggtagtgat 180 |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 805 tgcttaatgacattcatgtctgcagcaggcgaggtacatctagtttctggtggtagtgat 864 Query: 181 ggcctgctggtattatggagtgctgatcatatccacgactctcgggaacttgtacctaag 240 || || || |||||||||| ||||| |||||||| |||||||| |||||||| |||||| Sbjct: 865 ggtctacttatattatggagcgctgaccatatccatgactctcgtgaacttgtccctaag 924 Query: 241 attagtttgaaggctcacgatggaggggtggttgcggttgaactttcaagggtaatggga 300 ||||||||||||||||| |||||||| || ||||| |||||||||||| ||||||||||| Sbjct: 925 attagtttgaaggctcatgatggaggtgtagttgcagttgaactttcacgggtaatggga 984 Query: 301 agtgctccacagctcattacaataggggctgataaaactttagccatatgggataccgtt 360 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct: 985 agtgctccacaactcattacaataggggctgacaaaactttagccatatgggatactgtt 1044 Query: 361 acattcaaggaaataaggcgcattaaaccagtgcctaaacttgcctgccatagtgttgca 420 ||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 1045 acatttaaggaaataagacgcattaaaccagtacctaaacttgcttgccatagtgttgca 1104 Query: 421 tcttggtgccaccctcgtgcaccaaaccttgatattctgacttgtgtcaaggactcccat 480 || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1105 tcgtggtgtcatcctcgtgcaccaaaccttgatattctgacttgtgtcaaggactcccat 1164 Query: 481 atttgggccatagaacatccgacttattctgctttaacaagaccactctgcgaattgtcc 540 || ||||||||||||||||| || |||||||||||||||||||||||||| ||| ||||| Sbjct: 1165 atatgggccatagaacatccaacctattctgctttaacaagaccactctgtgaactgtcc 1224 Query: 541 tcgcttgttcctccgcaagcccttgcacagcataaaaaactgagggtttactgcatggtg 600 || ||||||||||| |||| |||| |||| ||||| ||| |||||||||||||||||||| Sbjct: 1225 tctcttgttcctccacaagtccttacacaacataagaaattgagggtttactgcatggtg 1284 Query: 601 g 601 | Sbjct: 1285 g 1285
>dbj|AK111531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022M05, full insert sequence Length = 2417 Score = 779 bits (393), Expect = 0.0 Identities = 549/601 (91%) Strand = Plus / Plus Query: 1 tcttctagtgatgcccctcttgttgcattcggggcatctgatggtgtgattagagttctc 60 ||||||||||| || ||||| |||||||| || | |||||||| ||||| |||||||| Sbjct: 686 tcttctagtgacgctcctctggttgcatttggatcttctgatggagtgataagagttctt 745 Query: 61 tcaatgatgacatggaagcttgttcgaaggtatactggtggacataaaggagcaatatct 120 |||||| |||||||||||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct: 746 tcaatgctgacatggaagcttgtgcgaaggtatacaggtggacacaaaggagcaatatct 805 Query: 121 tgcttaatgacattcatgtctgcagccggcgaggtacatttagtttctggtggtagtgat 180 |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct: 806 tgcttaatgacattcatgtctgcagcaggcgaggtacatctagtttctggtggtagtgat 865 Query: 181 ggcctgctggtattatggagtgctgatcatatccacgactctcgggaacttgtacctaag 240 || || || |||||||||| ||||| |||||||| |||||||| |||||||| |||||| Sbjct: 866 ggtctacttatattatggagcgctgaccatatccatgactctcgtgaacttgtccctaag 925 Query: 241 attagtttgaaggctcacgatggaggggtggttgcggttgaactttcaagggtaatggga 300 ||||||||||||||||| |||||||| || ||||| |||||||||||| ||||||||||| Sbjct: 926 attagtttgaaggctcatgatggaggtgtagttgcagttgaactttcacgggtaatggga 985 Query: 301 agtgctccacagctcattacaataggggctgataaaactttagccatatgggataccgtt 360 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct: 986 agtgctccacaactcattacaataggggctgacaaaactttagccatatgggatactgtt 1045 Query: 361 acattcaaggaaataaggcgcattaaaccagtgcctaaacttgcctgccatagtgttgca 420 ||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 1046 acatttaaggaaataagacgcattaaaccagtacctaaacttgcttgccatagtgttgca 1105 Query: 421 tcttggtgccaccctcgtgcaccaaaccttgatattctgacttgtgtcaaggactcccat 480 || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1106 tcgtggtgtcatcctcgtgcaccaaaccttgatattctgacttgtgtcaaggactcccat 1165 Query: 481 atttgggccatagaacatccgacttattctgctttaacaagaccactctgcgaattgtcc 540 || ||||||||||||||||| || |||||||||||||||||||||||||| ||| ||||| Sbjct: 1166 atatgggccatagaacatccaacctattctgctttaacaagaccactctgtgaactgtcc 1225 Query: 541 tcgcttgttcctccgcaagcccttgcacagcataaaaaactgagggtttactgcatggtg 600 || ||||||||||| |||| |||| |||| ||||| ||| |||||||||||||||||||| Sbjct: 1226 tctcttgttcctccacaagtccttacacaacataagaaattgagggtttactgcatggtg 1285 Query: 601 g 601 | Sbjct: 1286 g 1286
>ref|NM_192414.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 504 Score = 571 bits (288), Expect = e-159 Identities = 399/436 (91%) Strand = Plus / Plus Query: 152 aggtacatttagtttctggtggtagtgatggcctgctggtattatggagtgctgatcata 211 |||||||| |||||||||||||||||||||| || || |||||||||| ||||| |||| Sbjct: 11 aggtacatctagtttctggtggtagtgatggtctacttatattatggagcgctgaccata 70 Query: 212 tccacgactctcgggaacttgtacctaagattagtttgaaggctcacgatggaggggtgg 271 |||| |||||||| |||||||| ||||||||||||||||||||||| |||||||| || | Sbjct: 71 tccatgactctcgtgaacttgtccctaagattagtttgaaggctcatgatggaggtgtag 130 Query: 272 ttgcggttgaactttcaagggtaatgggaagtgctccacagctcattacaataggggctg 331 |||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct: 131 ttgcagttgaactttcacgggtaatgggaagtgctccacaactcattacaataggggctg 190 Query: 332 ataaaactttagccatatgggataccgttacattcaaggaaataaggcgcattaaaccag 391 | ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| Sbjct: 191 acaaaactttagccatatgggatactgttacatttaaggaaataagacgcattaaaccag 250 Query: 392 tgcctaaacttgcctgccatagtgttgcatcttggtgccaccctcgtgcaccaaaccttg 451 | ||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||| Sbjct: 251 tacctaaacttgcttgccatagtgttgcatcgtggtgtcatcctcgtgcaccaaaccttg 310 Query: 452 atattctgacttgtgtcaaggactcccatatttgggccatagaacatccgacttattctg 511 ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| Sbjct: 311 atattctgacttgtgtcaaggactcccatatatgggccatagaacatccaacctattctg 370 Query: 512 ctttaacaagaccactctgcgaattgtcctcgcttgttcctccgcaagcccttgcacagc 571 ||||||||||||||||||| ||| ||||||| ||||||||||| |||| |||| |||| | Sbjct: 371 ctttaacaagaccactctgtgaactgtcctctcttgttcctccacaagtccttacacaac 430 Query: 572 ataaaaaactgagggt 587 |||| ||| ||||||| Sbjct: 431 ataagaaattgagggt 446
>ref|NM_192415.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 573 Score = 190 bits (96), Expect = 4e-45 Identities = 141/156 (90%) Strand = Plus / Plus Query: 1 tcttctagtgatgcccctcttgttgcattcggggcatctgatggtgtgattagagttctc 60 ||||||||||| || ||||| |||||||| || | |||||||| ||||| |||||||| Sbjct: 295 tcttctagtgacgctcctctggttgcatttggatcttctgatggagtgataagagttctt 354 Query: 61 tcaatgatgacatggaagcttgttcgaaggtatactggtggacataaaggagcaatatct 120 |||||| |||||||||||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct: 355 tcaatgctgacatggaagcttgtgcgaaggtatacaggtggacacaaaggagcaatatct 414 Query: 121 tgcttaatgacattcatgtctgcagccggcgaggta 156 |||||||||||||||||||||||||| ||||||||| Sbjct: 415 tgcttaatgacattcatgtctgcagcaggcgaggta 450
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 180 bits (91), Expect = 3e-42 Identities = 109/115 (94%) Strand = Plus / Minus Query: 368 aggaaataaggcgcattaaaccagtgcctaaacttgcctgccatagtgttgcatcttggt 427 |||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||| Sbjct: 26455466 aggaaataagacgcattaaaccagtacctaaacttgcttgccatagtgttgcatcgtggt 26455407 Query: 428 gccaccctcgtgcaccaaaccttgatattctgacttgtgtcaaggactcccatat 482 | || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26455406 gtcatcctcgtgcaccaaaccttgatattctgacttgtgtcaaggactcccatat 26455352 Score = 168 bits (85), Expect = 1e-38 Identities = 112/121 (92%) Strand = Plus / Minus Query: 250 aaggctcacgatggaggggtggttgcggttgaactttcaagggtaatgggaagtgctcca 309 |||||||| |||||||| || ||||| |||||||||||| |||||||||||||||||||| Sbjct: 26455666 aaggctcatgatggaggtgtagttgcagttgaactttcacgggtaatgggaagtgctcca 26455607 Query: 310 cagctcattacaataggggctgataaaactttagccatatgggataccgttacattcaag 369 || |||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| Sbjct: 26455606 caactcattacaataggggctgacaaaactttagccatatgggatactgttacatttaag 26455547 Query: 370 g 370 | Sbjct: 26455546 g 26455546 Score = 127 bits (64), Expect = 5e-26 Identities = 76/80 (95%) Strand = Plus / Minus Query: 77 agcttgttcgaaggtatactggtggacataaaggagcaatatcttgcttaatgacattca 136 ||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct: 26456133 agcttgtgcgaaggtatacaggtggacacaaaggagcaatatcttgcttaatgacattca 26456074 Query: 137 tgtctgcagccggcgaggta 156 |||||||||| ||||||||| Sbjct: 26456073 tgtctgcagcaggcgaggta 26456054 Score = 123 bits (62), Expect = 7e-25 Identities = 92/102 (90%) Strand = Plus / Minus Query: 152 aggtacatttagtttctggtggtagtgatggcctgctggtattatggagtgctgatcata 211 |||||||| |||||||||||||||||||||| || || |||||||||| ||||| |||| Sbjct: 26455882 aggtacatctagtttctggtggtagtgatggtctacttatattatggagcgctgaccata 26455823 Query: 212 tccacgactctcgggaacttgtacctaagattagtttgaagg 253 |||| |||||||| |||||||| ||||||||||||||||||| Sbjct: 26455822 tccatgactctcgtgaacttgtccctaagattagtttgaagg 26455781 Score = 117 bits (59), Expect = 4e-23 Identities = 92/103 (89%) Strand = Plus / Minus Query: 485 gggccatagaacatccgacttattctgctttaacaagaccactctgcgaattgtcctcgc 544 |||||||||||||||| || |||||||||||||||||||||||||| ||| ||||||| | Sbjct: 26455241 gggccatagaacatccaacctattctgctttaacaagaccactctgtgaactgtcctctc 26455182 Query: 545 ttgttcctccgcaagcccttgcacagcataaaaaactgagggt 587 |||||||||| |||| |||| |||| ||||| ||| ||||||| Sbjct: 26455181 ttgttcctccacaagtccttacacaacataagaaattgagggt 26455139 Score = 67.9 bits (34), Expect = 4e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 1 tcttctagtgatgcccctcttgttgcattcggggcatctgatggtgtgattagagttctc 60 ||||||||||| || ||||| |||||||| || | |||||||| ||||| |||||||| Sbjct: 26456282 tcttctagtgacgctcctctggttgcatttggatcttctgatggagtgataagagttctt 26456223 Query: 61 tcaatgatgacatggaag 78 |||||| ||||||||||| Sbjct: 26456222 tcaatgctgacatggaag 26456205
>dbj|AP003709.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0006H05 Length = 154821 Score = 180 bits (91), Expect = 3e-42 Identities = 109/115 (94%) Strand = Plus / Minus Query: 368 aggaaataaggcgcattaaaccagtgcctaaacttgcctgccatagtgttgcatcttggt 427 |||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||| Sbjct: 64085 aggaaataagacgcattaaaccagtacctaaacttgcttgccatagtgttgcatcgtggt 64026 Query: 428 gccaccctcgtgcaccaaaccttgatattctgacttgtgtcaaggactcccatat 482 | || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 64025 gtcatcctcgtgcaccaaaccttgatattctgacttgtgtcaaggactcccatat 63971 Score = 168 bits (85), Expect = 1e-38 Identities = 112/121 (92%) Strand = Plus / Minus Query: 250 aaggctcacgatggaggggtggttgcggttgaactttcaagggtaatgggaagtgctcca 309 |||||||| |||||||| || ||||| |||||||||||| |||||||||||||||||||| Sbjct: 64285 aaggctcatgatggaggtgtagttgcagttgaactttcacgggtaatgggaagtgctcca 64226 Query: 310 cagctcattacaataggggctgataaaactttagccatatgggataccgttacattcaag 369 || |||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| Sbjct: 64225 caactcattacaataggggctgacaaaactttagccatatgggatactgttacatttaag 64166 Query: 370 g 370 | Sbjct: 64165 g 64165 Score = 127 bits (64), Expect = 5e-26 Identities = 76/80 (95%) Strand = Plus / Minus Query: 77 agcttgttcgaaggtatactggtggacataaaggagcaatatcttgcttaatgacattca 136 ||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct: 64752 agcttgtgcgaaggtatacaggtggacacaaaggagcaatatcttgcttaatgacattca 64693 Query: 137 tgtctgcagccggcgaggta 156 |||||||||| ||||||||| Sbjct: 64692 tgtctgcagcaggcgaggta 64673 Score = 123 bits (62), Expect = 7e-25 Identities = 92/102 (90%) Strand = Plus / Minus Query: 152 aggtacatttagtttctggtggtagtgatggcctgctggtattatggagtgctgatcata 211 |||||||| |||||||||||||||||||||| || || |||||||||| ||||| |||| Sbjct: 64501 aggtacatctagtttctggtggtagtgatggtctacttatattatggagcgctgaccata 64442 Query: 212 tccacgactctcgggaacttgtacctaagattagtttgaagg 253 |||| |||||||| |||||||| ||||||||||||||||||| Sbjct: 64441 tccatgactctcgtgaacttgtccctaagattagtttgaagg 64400 Score = 117 bits (59), Expect = 4e-23 Identities = 92/103 (89%) Strand = Plus / Minus Query: 485 gggccatagaacatccgacttattctgctttaacaagaccactctgcgaattgtcctcgc 544 |||||||||||||||| || |||||||||||||||||||||||||| ||| ||||||| | Sbjct: 63860 gggccatagaacatccaacctattctgctttaacaagaccactctgtgaactgtcctctc 63801 Query: 545 ttgttcctccgcaagcccttgcacagcataaaaaactgagggt 587 |||||||||| |||| |||| |||| ||||| ||| ||||||| Sbjct: 63800 ttgttcctccacaagtccttacacaacataagaaattgagggt 63758 Score = 67.9 bits (34), Expect = 4e-08 Identities = 67/78 (85%) Strand = Plus / Minus Query: 1 tcttctagtgatgcccctcttgttgcattcggggcatctgatggtgtgattagagttctc 60 ||||||||||| || ||||| |||||||| || | |||||||| ||||| |||||||| Sbjct: 64901 tcttctagtgacgctcctctggttgcatttggatcttctgatggagtgataagagttctt 64842 Query: 61 tcaatgatgacatggaag 78 |||||| ||||||||||| Sbjct: 64841 tcaatgctgacatggaag 64824
>ref|NM_122380.3| Arabidopsis thaliana unknown protein AT5G24710 mRNA, complete cds Length = 4477 Score = 123 bits (62), Expect = 7e-25 Identities = 170/206 (82%) Strand = Plus / Plus Query: 259 gatggaggggtggttgcggttgaactttcaagggtaatgggaagtgctccacagctcatt 318 ||||| |||||||| || ||||| || |||||||||| || ||||||||||| | ||| Sbjct: 1103 gatggtggggtggtggctgttgagctgtcaagggtaagtgggagtgctccacaattgatt 1162 Query: 319 acaataggggctgataaaactttagccatatgggataccgttacattcaaggaaataagg 378 ||||| |||||||| || || || |||||||||||||| | ||||| ||||| || | Sbjct: 1163 acaattggggctgacaagacattggccatatgggatacaatgacatttaaggagctacgt 1222 Query: 379 cgcattaaaccagtgcctaaacttgcctgccatagtgttgcatcttggtgccaccctcgt 438 | |||||||| || || ||||| || ||||| ||||||||||||||||| |||||||| Sbjct: 1223 agaattaaacctgtcccgaaactagcttgccacagtgttgcatcttggtgtcaccctcga 1282 Query: 439 gcaccaaaccttgatattctgacttg 464 || ||||||||||||||| ||||||| Sbjct: 1283 gcgccaaaccttgatattttgacttg 1308 Score = 48.1 bits (24), Expect = 0.034 Identities = 84/104 (80%) Strand = Plus / Plus Query: 8 gtgatgcccctcttgttgcattcggggcatctgatggtgtgattagagttctctcaatga 67 |||||| |||| | |||||||| || || |||||||||| ||| | ||| | ||||||| Sbjct: 789 gtgatggccctttagttgcatttggttcaactgatggtgtcattcgggttttatcaatga 848 Query: 68 tgacatggaagcttgttcgaaggtatactggtggacataaagga 111 | ||||||||||||| || | ||||| ||||| ||||||||| Sbjct: 849 taacatggaagcttgcacgtcgatatacaggtggccataaagga 892
>dbj|AB016881.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXC17 Length = 27263 Score = 85.7 bits (43), Expect = 2e-13 Identities = 73/83 (87%) Strand = Plus / Minus Query: 382 attaaaccagtgcctaaacttgcctgccatagtgttgcatcttggtgccaccctcgtgca 441 |||||||| || || ||||| || ||||| ||||||||||||||||| |||||||| || Sbjct: 25048 attaaacctgtcccgaaactagcttgccacagtgttgcatcttggtgtcaccctcgagcg 24989 Query: 442 ccaaaccttgatattctgacttg 464 ||||||||||||||| ||||||| Sbjct: 24988 ccaaaccttgatattttgacttg 24966 Score = 67.9 bits (34), Expect = 4e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 259 gatggaggggtggttgcggttgaactttcaagggtaatgggaagtgctccacagctcatt 318 ||||| |||||||| || ||||| || |||||||||| || ||||||||||| | ||| Sbjct: 25252 gatggtggggtggtggctgttgagctgtcaagggtaagtgggagtgctccacaattgatt 25193 Query: 319 acaataggggctgataaaactttagccatatgggatac 356 ||||| |||||||| || || || |||||||||||||| Sbjct: 25192 acaattggggctgacaagacattggccatatgggatac 25155
>gb|AC149038.2| Medicago truncatula chromosome 7 BAC clone mth2-29a5, complete sequence Length = 136566 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 403 gcctgccatagtgttgcatcttggtgccaccctcgtgcaccaaaccttgatattctgact 462 |||||||| ||||| || ||||||||||||||||| || || |||||||||||||| || Sbjct: 39959 gcctgccacagtgtggcttcttggtgccaccctcgagctccgaaccttgatattctaacc 40018 Query: 463 tgtgtcaa 470 |||||||| Sbjct: 40019 tgtgtcaa 40026 Score = 46.1 bits (23), Expect = 0.13 Identities = 53/63 (84%) Strand = Plus / Plus Query: 16 cctcttgttgcattcggggcatctgatggtgtgattagagttctctcaatgatgacatgg 75 |||||||| || || || |||||||| || || ||||||||||| || ||||| |||||| Sbjct: 38612 cctcttgtggcttttggtgcatctgacggagtcattagagttctttcgatgattacatgg 38671 Query: 76 aag 78 ||| Sbjct: 38672 aag 38674
>gb|AC099785.2| Homo sapiens chromosome 1 clone RP11-435I3, complete sequence Length = 186160 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 47 tgattagagttctctcaatgatgac 71 ||||||||||||||| ||||||||| Sbjct: 103487 tgattagagttctcttaatgatgac 103463
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 328 gctgataaaactttagccata 348 ||||||||||||||||||||| Sbjct: 2415950 gctgataaaactttagccata 2415930
>gb|AC027184.15| Mus musculus chromosome 14, clone RP23-138C14, complete sequence Length = 196806 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 cttaatgacattcatgtctg 142 |||||||||||||||||||| Sbjct: 975 cttaatgacattcatgtctg 956
>gb|AC132474.3| Mus musculus BAC clone RP23-114G13 from chromosome 9, complete sequence Length = 220976 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 cttaatgacattcatgtctg 142 |||||||||||||||||||| Sbjct: 23218 cttaatgacattcatgtctg 23199
>gb|AC091096.7| Homo sapiens chromosome 8, clone RP11-587H10, complete sequence Length = 207630 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 ctccacagctcattacaata 324 |||||||||||||||||||| Sbjct: 73753 ctccacagctcattacaata 73734
>dbj|AK144251.1| Mus musculus 15 days embryo brain cDNA, RIKEN full-length enriched library, clone:G630001G14 product:hypothetical Proline-rich region profile/Glycine-rich region profile containing protein, full insert sequence Length = 2751 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 cttaatgacattcatgtctg 142 |||||||||||||||||||| Sbjct: 2459 cttaatgacattcatgtctg 2440
>ref|XM_313323.2| Anopheles gambiae str. PEST ENSANGP00000010493 (ENSANGG00000008004), partial mRNA Length = 2205 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ctggtggacataaaggagca 114 |||||||||||||||||||| Sbjct: 1174 ctggtggacataaaggagca 1155
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 tcttggtgccaccctcgtgc 440 |||||||||||||||||||| Sbjct: 2906680 tcttggtgccaccctcgtgc 2906699
>gb|AC007103.4|AC007103 Homo sapiens chromosome 4 clone C0190D22 map 4p16, complete sequence Length = 181571 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 accttgatattctgacttgt 465 |||||||||||||||||||| Sbjct: 35821 accttgatattctgacttgt 35802
>ref|NM_001033271.1| Mus musculus transmembrane protein 55b (Tmem55b), mRNA Length = 2751 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 cttaatgacattcatgtctg 142 |||||||||||||||||||| Sbjct: 2459 cttaatgacattcatgtctg 2440
>gb|U12273.1|MMU12273 Mus musculus apurinic/apyrimidinic endonuclease (Apex) gene, complete cds Length = 2583 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 cttaatgacattcatgtctg 142 |||||||||||||||||||| Sbjct: 1747 cttaatgacattcatgtctg 1766
>gb|AC136376.3| Mus musculus BAC clone RP23-243M12 from 14, complete sequence Length = 197646 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 cttaatgacattcatgtctg 142 |||||||||||||||||||| Sbjct: 151138 cttaatgacattcatgtctg 151119
>dbj|D38077.1|MUSAPEX Mus musculus gene for APEX nuclease, complete cds Length = 4042 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 cttaatgacattcatgtctg 142 |||||||||||||||||||| Sbjct: 2749 cttaatgacattcatgtctg 2768 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,269,638 Number of Sequences: 3902068 Number of extensions: 4269638 Number of successful extensions: 70809 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70713 Number of HSP's gapped (non-prelim): 95 length of query: 601 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 578 effective length of database: 17,143,297,704 effective search space: 9908826072912 effective search space used: 9908826072912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
