>YPFP_BACSU (P54166) Putative glycosyl transferase ypfP (EC 2.-.-.-)|
          Length = 382

 Score = 62.8 bits (151), Expect = 8e-10
 Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 1/187 (0%)
 Frame = +2

Query: 62  KKVLILMSDTGGGHRASAEAIKAAFAQEYGDDYQ-VFVTDLWTEHTPWPFNQLPRSYSFL 238
           K+VLIL ++ G GH    +  K  + Q     +Q V V++L+ E  P         Y   
Sbjct: 5   KRVLILTANYGNGH---VQVAKTLYEQCVRLGFQHVTVSNLYQESNPIVSEVTQYLYLKS 61

Query: 239 VKHGPLWKMTYYGTAPRVIHQPHFAATATFIAREVAKGLMKYQPDVIISVHPLMQHVPLR 418
              G  +   +Y    ++ ++  F        + + + + ++QPD+II+  P++     R
Sbjct: 62  FSIGKQFYRLFYYGVDKIYNKRKFNIYFKMGNKRLGELVDEHQPDIIINTFPMIVVPEYR 121

Query: 419 VLRSRGLLDKIPFTTVITDLSTCHPTWFHKLVTRCYCPSAEVTKRALKAGLKPSQIKVYG 598
               R     IP   V+TD    H  W H+ V + Y  +  V ++ L+ G  PS +K+ G
Sbjct: 122 RRTGR----VIPTFNVMTDFCL-HKIWVHENVDKYYVATDYVKEKLLEIGTHPSNVKITG 176

Query: 599 LPVRPSF 619
           +P+RP F
Sbjct: 177 IPIRPQF 183

>FP1_MYTGA (Q27409) Adhesive plaque matrix protein precursor (Foot protein 1)|
           (MGFP1) (MGFP-1)
          Length = 751

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +2

Query: 206 FNQLPRSYSFLVKHGPLWKMTYYGTAPRVIHQPHFAATATFIAREVAKGLMKYQP 370
           +  LP +Y +  KHGP++K       P   + P + +   ++   +AK L  Y+P
Sbjct: 42  YKTLPNAYPYGTKHGPVYKPVKTSYHPTNSYPPTYGSKTNYL--PLAKKLSSYKP 94

>COOS2_METMA (Q8PUN1) Carbon monoxide dehydrogenase 2 (EC 1.2.99.2) (CODH 2)|
          Length = 634

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 266 TYYGTAPRVIHQPHFAATATFIAREVAKGLMKYQPDVIISVHPLMQHV 409
           TY    P V   P+     T   REV  GL+  + D + +V  + QH+
Sbjct: 578 TYVNPVPTVTGAPNLVKLLTEDCREVTGGLLNVETDAVKAVDGIEQHI 625

>MURC_BIFLO (Q8G4Q4) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 512

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 269 YYGTAPRVIHQPHFAATATFIAREVAKGLMKYQPDVIISVHP 394
           Y  +  RVI QPH  +   F A + AK L K    +I  + P
Sbjct: 389 YPDSTIRVIFQPHLFSRTKFFAHQFAKSLAKADDVIITGIFP 430

>RPOC_MYCS5 (Q4A5S8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1492

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 542 VTKRALKAGLKPSQIKVYGLPVRPSFAKPV 631
           + K  LK+G KP  + +Y LPV P+  +P+
Sbjct: 296 IIKSFLKSGQKPENLLIYNLPVIPADLRPL 325

>NORM_PASMU (Q9CMZ9) Probable multidrug resistance protein norM|
           (Multidrug-efflux transporter)
          Length = 464

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +2

Query: 350 GLMKYQPDVIISVHPLMQHVPLRVLRSRGLLDKIPFTTVITDLSTCHPTWFHKLVTRCYC 529
           G+ K +P ++I+   L  ++PL  +   G L    F  V   ++T    WF  ++   YC
Sbjct: 157 GIAKTKPAMVITFLGLGLNIPLNYIFIYGKLGIPAFGAVGCGIATAIVNWFMCILMIAYC 216

Query: 530 PSAEVTKRALKAGLK 574
            +A   +R LK   K
Sbjct: 217 KNAR-NQRDLKVFAK 230


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,061,988
Number of Sequences: 219361
Number of extensions: 1831728
Number of successful extensions: 4761
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4759
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)