ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah63l21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1DHX35_PONPY (Q5RBD4) Probable ATP-dependent RNA helicase DHX35 (... 189 4e-48
2DHX35_HUMAN (Q9H5Z1) Probable ATP-dependent RNA helicase DHX35 (... 189 4e-48
3DHX35_CAEEL (Q9BKQ8) Probable ATP-dependent RNA helicase DHX35 h... 172 8e-43
4DHX16_CAEEL (O45244) Probable pre-mRNA-splicing factor ATP-depen... 161 1e-39
5DHX8_SCHPO (O42643) Putative pre-mRNA-splicing factor ATP-depend... 155 8e-38
6PRP2_YEAST (P20095) Pre-mRNA-splicing factor ATP-dependent RNA h... 153 4e-37
7CDC28_SCHPO (Q10752) Putative ATP-dependent RNA helicase cdc28 (... 152 5e-37
8DHX16_HUMAN (O60231) Putative pre-mRNA-splicing factor ATP-depen... 151 1e-36
9DHX16_PANTR (Q7YR39) Putative pre-mRNA-splicing factor ATP-depen... 151 1e-36
10DHX8_ARATH (Q38953) Probable pre-mRNA-splicing factor ATP-depend... 151 1e-36
11YK99_SCHPO (Q9HE06) Putative pre-mRNA-splicing factor ATP-depend... 148 9e-36
12DHX8_HUMAN (Q14562) ATP-dependent RNA helicase DHX8 (EC 3.6.1.-)... 147 2e-35
13PRP22_YEAST (P24384) Pre-mRNA-splicing factor ATP-dependent RNA ... 147 3e-35
14PRP16_SCHPO (Q9P774) Pre-mRNA-splicing factor ATP-dependent RNA ... 140 2e-33
15DHX15_ARATH (O22899) Probable pre-mRNA-splicing factor ATP-depen... 140 2e-33
16MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-depend... 138 1e-32
17MOG1_CAEEL (P34498) Probable pre-mRNA-splicing factor ATP-depend... 138 1e-32
18PRP16_YEAST (P15938) Pre-mRNA-splicing factor ATP-dependent RNA ... 136 5e-32
19DHX15_MOUSE (O35286) Putative pre-mRNA-splicing factor ATP-depen... 135 6e-32
20DHX15_HUMAN (O43143) Putative pre-mRNA-splicing factor ATP-depen... 135 6e-32
21PRP16_HUMAN (Q92620) Pre-mRNA-splicing factor ATP-dependent RNA ... 135 1e-31
22YKQ0_CAEEL (P34305) Putative ATP-dependent RNA helicase C06E1.10... 134 2e-31
23DHX33_MOUSE (Q80VY9) Putative ATP-dependent RNA helicase DHX33 (... 134 2e-31
24PRH1_SCHPO (Q03319) Probable ATP-dependent RNA helicase prh1 (EC... 132 5e-31
25DHX15_CAEEL (Q20875) Putative pre-mRNA-splicing factor ATP-depen... 132 9e-31
26PRP43_YEAST (P53131) Pre-mRNA-splicing factor ATP-dependent RNA ... 132 9e-31
27DHX15_SCHPO (O42945) Probable pre-mRNA-splicing factor ATP-depen... 130 3e-30
28KZ_DROME (O46072) Probable ATP-dependent RNA helicase kurz (EC 3... 130 3e-30
29DHX33_HUMAN (Q9H6R0) Putative ATP-dependent RNA helicase DHX33 (... 129 6e-30
30DHX37_HUMAN (Q8IY37) Probable ATP-dependent RNA helicase DHX37 (... 126 4e-29
31YK16_SCHPO (Q9HDY4) Putative ATP-dependent RNA helicase PB1A10.0... 126 5e-29
32DHR1_YEAST (Q04217) Probable ATP-dependent RNA helicase DHR1 (EC... 125 7e-29
33DHR2_YEAST (P36009) Probable ATP-dependent RNA helicase DHR2 (EC... 125 1e-28
34HRPA_ECOLI (P43329) ATP-dependent RNA helicase hrpA (EC 3.6.1.-) 122 7e-28
35DHX34_HUMAN (Q14147) Probable ATP-dependent RNA helicase DHX34 (... 120 2e-27
36DHX34_MOUSE (Q9DBV3) Probable ATP-dependent RNA helicase DHX34 (... 120 3e-27
37HRPA_HAEIN (P45018) ATP-dependent RNA helicase hrpA homolog (EC ... 115 7e-26
38DHX57_HUMAN (Q6P158) Putative ATP-dependent RNA helicase DHX57 (... 95 1e-19
39DHX57_MOUSE (Q6P5D3) Putative ATP-dependent RNA helicase DHX57 (... 91 2e-18
40DHX9_PONPY (Q5R874) ATP-dependent RNA helicase A (EC 3.6.1.-) (N... 84 2e-16
41DHX9_HUMAN (Q08211) ATP-dependent RNA helicase A (EC 3.6.1.-) (N... 84 2e-16
42DHX9_XENLA (Q68FK8) ATP-dependent RNA helicase A-like protein (E... 84 3e-16
43DHX9_MOUSE (O70133) ATP-dependent RNA helicase A (EC 3.6.1.-) (N... 83 5e-16
44DHX9_BOVIN (Q28141) ATP-dependent RNA helicase A (EC 3.6.1.-) (N... 82 8e-16
45DHX9_CAEEL (Q22307) Probable ATP-dependent RNA helicase A (EC 3.... 82 1e-15
46MLE_DROME (P24785) Dosage compensation regulator (EC 3.6.1.-) (A... 77 5e-14
47DHX15_STRPU (O17438) Putative pre-mRNA-splicing factor ATP-depen... 74 3e-13
48HRPB_ECOLI (P37024) ATP-dependent RNA helicase hrpB (EC 3.6.1.-) 71 2e-12
49POLG_BYMV (P17765) Genome polyprotein [Contains: P1 proteinase (... 40 0.005
50NTP2_FOWPV (O72904) Nucleoside triphosphatase II (EC 3.6.1.15) (... 40 0.006
51POLG_BTMV (Q6XW15) Genome polyprotein [Contains: P1 proteinase (... 39 0.010
52POLG_PEMVM (O56075) Genome polyprotein [Contains: P1 proteinase ... 38 0.018
53POLG_SBMVN (P21231) Genome polyprotein [Contains: P1 proteinase ... 37 0.040
54POLG_PPVNA (P17766) Genome polyprotein [Contains: P1 proteinase ... 36 0.089
55POLG_PPVD (P13529) Genome polyprotein [Contains: P1 proteinase (... 36 0.089
56POLG_PPVSK (Q84934) Genome polyprotein [Contains: P1 proteinase ... 36 0.089
57POLG_PPVRA (P17767) Genome polyprotein [Contains: P1 proteinase ... 36 0.089
58POLG_PVMA (Q85197) Genome polyprotein [Contains: P1 proteinase (... 36 0.089
59POLG_SBMVG (Q90069) Genome polyprotein [Contains: P1 proteinase ... 36 0.089
60POL1_BAMMN (P90245) Genome polyprotein 1 [Contains: Protein P3; ... 36 0.089
61POL1_BAYMJ (Q01206) Genome polyprotein 1 [Contains: Protein P3; ... 35 0.20
62POL1_BAYMG (Q04574) Genome polyprotein 1 [Contains: Protein P3; ... 35 0.20
63POLG_BCMVN (Q65399) Genome polyprotein [Contains: P1 proteinase ... 34 0.26
64NTP2_MYXVL (Q9Q8Q2) Nucleoside triphosphatase II (EC 3.6.1.15) (... 33 0.44
65POLG_ZYMVC (P18479) Genome polyprotein [Contains: P1 proteinase ... 33 0.58
66POLG_ZYMVS (O36979) Genome polyprotein [Contains: P1 proteinase ... 33 0.75
67MDR_PLAFF (P13568) Multidrug resistance protein (EC 3.6.3.44) (C... 33 0.75
68POLG_ZYMVR (Q89330) Genome polyprotein [Contains: P1 proteinase ... 32 0.98
69YDG1_SCHPO (Q10491) Hypothetical protein C26F1.01 in chromosome I 31 2.2
70RAD50_PYRAB (Q9UZC8) DNA double-strand break repair rad50 ATPase 31 2.9
71YP96_CAEEL (Q09476) Hypothetical protein C28H8.6 in chromosome III 30 3.7
72POLG_TUMVJ (P89509) Genome polyprotein [Contains: P1 proteinase ... 30 3.7
73Y3190_CLOAB (Q97EC3) Putative ATP:guanido phosphotransferase CAC... 29 8.3
74GSPE_VIBCH (P37093) General secretion pathway protein E (Type II... 29 8.3 
>DHX35_PONPY (Q5RBD4) Probable ATP-dependent RNA helicase DHX35 (EC 3.6.1.-)|
           (DEAH box protein 35)
          Length = 720

 Score =  189 bits (481), Expect = 4e-48
 Identities = 99/190 (52%), Positives = 125/190 (65%)
 Frame = +1

Query: 1   GSEKPSASLVDDEEGGVLFLPTNTXXXXXXXXXXXXXLERLRQRLPVYKYRKAILYLVER 180
           G+E P  S+ ++ +     L  N+             +E+ RQ+LPV+K R  ILYL+E 
Sbjct: 14  GTEGPGVSISEERQS----LAENSGTTVVYNPYAALSIEQQRQKLPVFKLRNHILYLIEN 69

Query: 181 HGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRXXXXXXXXXX 360
           + T +IVGETG GKSTQIPQYL EAGW   GR++G TQPRR+A  TVA R          
Sbjct: 70  YQTVVIVGETGCGKSTQIPQYLAEAGWTAEGRVVGVTQPRRVAAVTVAGRVAEERGAVLG 129

Query: 361 XXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPLLSKYSVIMIDEAHERSISTDILL 540
               Y IRF+D T+   T IKFLTDG+L+REMM DPLL+KYSVIM+DEAHER++ TDI +
Sbjct: 130 HEVGYCIRFDDCTDQLATRIKFLTDGMLVREMMVDPLLTKYSVIMLDEAHERTLYTDIAI 189

Query: 541 GLLKKIQRLR 570
           GLLKKIQ+ R
Sbjct: 190 GLLKKIQKKR 199
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>DHX35_HUMAN (Q9H5Z1) Probable ATP-dependent RNA helicase DHX35 (EC 3.6.1.-)|
           (DEAH box protein 35)
          Length = 703

 Score =  189 bits (481), Expect = 4e-48
 Identities = 99/190 (52%), Positives = 125/190 (65%)
 Frame = +1

Query: 1   GSEKPSASLVDDEEGGVLFLPTNTXXXXXXXXXXXXXLERLRQRLPVYKYRKAILYLVER 180
           G+E P  S+ ++ +     L  N+             +E+ RQ+LPV+K R  ILYL+E 
Sbjct: 14  GTEGPGVSISEERQS----LAENSGTTVVYNPYAALSIEQQRQKLPVFKLRNHILYLIEN 69

Query: 181 HGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRXXXXXXXXXX 360
           + T +IVGETG GKSTQIPQYL EAGW   GR++G TQPRR+A  TVA R          
Sbjct: 70  YQTVVIVGETGCGKSTQIPQYLAEAGWTAEGRVVGVTQPRRVAAVTVAGRVAEERGAVLG 129

Query: 361 XXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPLLSKYSVIMIDEAHERSISTDILL 540
               Y IRF+D T+   T IKFLTDG+L+REMM DPLL+KYSVIM+DEAHER++ TDI +
Sbjct: 130 HEVGYCIRFDDCTDQLATRIKFLTDGMLVREMMVDPLLTKYSVIMLDEAHERTLYTDIAI 189

Query: 541 GLLKKIQRLR 570
           GLLKKIQ+ R
Sbjct: 190 GLLKKIQKKR 199
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>DHX35_CAEEL (Q9BKQ8) Probable ATP-dependent RNA helicase DHX35 homolog (EC|
           3.6.1.-)
          Length = 732

 Score =  172 bits (435), Expect = 8e-43
 Identities = 88/153 (57%), Positives = 115/153 (75%)
 Frame = +1

Query: 112 LERLRQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCT 291
           +++ R RLP++K R  ILY+ ER+ T IIVGETG GKSTQ+PQ+L EAGWA  GR I  T
Sbjct: 70  IQQQRIRLPIFKNRGHILYMCERYRTIIIVGETGCGKSTQVPQFLLEAGWAADGRQIVIT 129

Query: 292 QPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPL 471
           QPRR+AV T+A+R              YT+RF+D ++   T +KF+TDG+L+RE++ DPL
Sbjct: 130 QPRRVAVVTLATRVAEEKDCILGHDVGYTVRFDDVSDKD-TKVKFMTDGLLLREILADPL 188

Query: 472 LSKYSVIMIDEAHERSISTDILLGLLKKIQRLR 570
           LSKYS+IMIDEAHERS +TDILLGLL+KI ++R
Sbjct: 189 LSKYSIIMIDEAHERSCNTDILLGLLRKIIQIR 221
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>DHX16_CAEEL (O45244) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase mog-4 (EC 3.6.1.-) (Sex determination protein
           mog-4) (Masculinization of germ line protein 4)
          Length = 1008

 Score =  161 bits (408), Expect = 1e-39
 Identities = 81/153 (52%), Positives = 108/153 (70%)
 Frame = +1

Query: 112 LERLRQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCT 291
           +E  R+ LPVY +R A +  V+ H   II GETGSGK+TQ+PQYL EAG+ EGG+ IGCT
Sbjct: 357 IEETRKSLPVYAFRDAFIEAVKEHQVLIIEGETGSGKTTQLPQYLYEAGFCEGGKRIGCT 416

Query: 292 QPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPL 471
           QPRR+A  +VA+R              Y+IRFED T+   T++K++TDG+L+RE + +P 
Sbjct: 417 QPRRVAAMSVAARVADEVGCKLGTQVGYSIRFEDCTSE-KTVLKYMTDGMLLREFLNEPD 475

Query: 472 LSKYSVIMIDEAHERSISTDILLGLLKKIQRLR 570
           L+ YSV+MIDEAHER++ TDIL GL+K I R R
Sbjct: 476 LASYSVMMIDEAHERTLHTDILFGLVKDIARFR 508
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>DHX8_SCHPO (O42643) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase C10F6.02c (EC 3.6.1.-)
          Length = 1168

 Score =  155 bits (392), Expect = 8e-38
 Identities = 79/154 (51%), Positives = 106/154 (68%)
 Frame = +1

Query: 112 LERLRQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCT 291
           ++  R+ LPV+K RK  L  V ++   +++GETGSGK+TQI QYL E G+    ++IGCT
Sbjct: 503 MKEQREGLPVFKLRKQFLEAVSKNQILVLLGETGSGKTTQITQYLAEEGYTSDSKMIGCT 562

Query: 292 QPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPL 471
           QPRR+A  +VA R              YTIRFED+T+  MT IK++TDG+L RE + DPL
Sbjct: 563 QPRRVAAMSVAKRVAEEVGCRVGEEVGYTIRFEDKTS-RMTQIKYMTDGMLQRECLVDPL 621

Query: 472 LSKYSVIMIDEAHERSISTDILLGLLKKIQRLRP 573
           LSKYSVI++DEAHER+++TD+L GLLK     RP
Sbjct: 622 LSKYSVIILDEAHERTVATDVLFGLLKGTVLKRP 655
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>PRP2_YEAST (P20095) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP2|
           (EC 3.6.1.-)
          Length = 876

 Score =  153 bits (386), Expect = 4e-37
 Identities = 77/155 (49%), Positives = 109/155 (70%), Gaps = 1/155 (0%)
 Frame = +1

Query: 112 LERLRQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRL-IGC 288
           ++  R+ LPV++Y+  +L  ++++   II+GETGSGK+TQ+PQYL E G+ + G+L I  
Sbjct: 216 IQEARKLLPVHQYKDELLQEIKKNQVLIIMGETGSGKTTQLPQYLVEDGFTDQGKLQIAI 275

Query: 289 TQPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDP 468
           TQPRR+A  +VA+R              Y IRFED+T P  T++K++TDG+L+RE + D 
Sbjct: 276 TQPRRVAATSVAARVADEMNVVLGKEVGYQIRFEDKTTPNKTVLKYMTDGMLLREFLTDS 335

Query: 469 LLSKYSVIMIDEAHERSISTDILLGLLKKIQRLRP 573
            LSKYS IMIDEAHER+++TDIL+GLLK I   RP
Sbjct: 336 KLSKYSCIMIDEAHERTLATDILIGLLKDILPQRP 370
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>CDC28_SCHPO (Q10752) Putative ATP-dependent RNA helicase cdc28 (EC 3.6.1.-)|
          Length = 1055

 Score =  152 bits (385), Expect = 5e-37
 Identities = 77/154 (50%), Positives = 107/154 (69%)
 Frame = +1

Query: 112 LERLRQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCT 291
           LE  R+ LPVY+Y+  +L  +  +   +IV ETGSGK+TQ+PQ+L EAG+ +G + I CT
Sbjct: 411 LESSRKSLPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQLPQFLHEAGYTKGNKKICCT 470

Query: 292 QPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPL 471
           QPRR+A  +VA+R              Y+IRFE+ T+   T+IK+LTDG+L+RE + +P 
Sbjct: 471 QPRRVAAMSVAARVAKEMDVRLGQEVGYSIRFENATSE-KTVIKYLTDGMLLREFLTEPD 529

Query: 472 LSKYSVIMIDEAHERSISTDILLGLLKKIQRLRP 573
           L+ YSVI+IDEAHER++ TDIL GL+K I R RP
Sbjct: 530 LASYSVIIIDEAHERTLHTDILFGLVKDIARFRP 563
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>DHX16_HUMAN (O60231) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase DHX16 (EC 3.6.1.-) (DEAH-box protein 16)
           (ATP-dependent RNA helicase #3)
          Length = 1041

 Score =  151 bits (382), Expect = 1e-36
 Identities = 80/198 (40%), Positives = 118/198 (59%), Gaps = 8/198 (4%)
 Frame = +1

Query: 4   SEKPSASLVDDEEGGVLFLPTN--------TXXXXXXXXXXXXXLERLRQRLPVYKYRKA 159
           S++P   LV +EE  + F+           +             ++ +R+ LPV+ +R+ 
Sbjct: 348 SQEPKYQLVLEEEETIEFVRATQLQGDEEPSAPPTSTQAQQKESIQAVRRSLPVFPFREE 407

Query: 160 ILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRXXX 339
           +L  +  H   II GETGSGK+TQIPQYL E G+   G  I CTQPRR+A  +VA+R   
Sbjct: 408 LLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRRVAAMSVAARVAR 467

Query: 340 XXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPLLSKYSVIMIDEAHERS 519
                      Y+IRFED T+   T+++++TDG+L+RE + +P L+ YSV+M+DEAHER+
Sbjct: 468 EMGVKLGNEVGYSIRFEDCTSE-RTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERT 526

Query: 520 ISTDILLGLLKKIQRLRP 573
           + TDIL GL+K + R RP
Sbjct: 527 LHTDILFGLIKDVARFRP 544
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>DHX16_PANTR (Q7YR39) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase DHX16 (EC 3.6.1.-) (DEAH-box protein 16)
           (ATP-dependent RNA helicase #3)
          Length = 1044

 Score =  151 bits (382), Expect = 1e-36
 Identities = 80/198 (40%), Positives = 118/198 (59%), Gaps = 8/198 (4%)
 Frame = +1

Query: 4   SEKPSASLVDDEEGGVLFLPTN--------TXXXXXXXXXXXXXLERLRQRLPVYKYRKA 159
           S++P   LV +EE  + F+           +             ++ +R+ LPV+ +R+ 
Sbjct: 351 SQEPKYQLVLEEEETIEFVRATQLQGNEEPSAPPTSTQAQQKESIQAVRRSLPVFPFREE 410

Query: 160 ILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRXXX 339
           +L  +  H   II GETGSGK+TQIPQYL E G+   G  I CTQPRR+A  +VA+R   
Sbjct: 411 LLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQPRRVAAMSVAARVAR 470

Query: 340 XXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPLLSKYSVIMIDEAHERS 519
                      Y+IRFED T+   T+++++TDG+L+RE + +P L+ YSV+M+DEAHER+
Sbjct: 471 EMGVKLGNEVGYSIRFEDCTSE-RTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERT 529

Query: 520 ISTDILLGLLKKIQRLRP 573
           + TDIL GL+K + R RP
Sbjct: 530 LHTDILFGLIKDVARFRP 547
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>DHX8_ARATH (Q38953) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase (EC 3.6.1.-)
          Length = 1168

 Score =  151 bits (381), Expect = 1e-36
 Identities = 76/153 (49%), Positives = 106/153 (69%)
 Frame = +1

Query: 112 LERLRQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCT 291
           ++  R+ LP+YK +K ++  V  +   +++GETGSGK+TQ+ QYL EAG+   G+ IGCT
Sbjct: 508 IQEQRESLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGK-IGCT 566

Query: 292 QPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPL 471
           QPRR+A  +VA R              Y IRFED T P  T+IK++TDG+L+RE++ D  
Sbjct: 567 QPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPD-TVIKYMTDGMLLREILIDEN 625

Query: 472 LSKYSVIMIDEAHERSISTDILLGLLKKIQRLR 570
           LS+YSVIM+DEAHER+I TD+L GLLKK+ + R
Sbjct: 626 LSQYSVIMLDEAHERTIHTDVLFGLLKKLMKRR 658
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>YK99_SCHPO (Q9HE06) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase C20H4.09 (EC 3.6.1.-) (DEAH-box helicase
           C20H4.09)
          Length = 647

 Score =  148 bits (374), Expect = 9e-36
 Identities = 70/149 (46%), Positives = 103/149 (69%)
 Frame = +1

Query: 124 RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRR 303
           ++ LP+ KYR  +LY VE++  TI++G TG GK+TQIPQ+L EAGWA    +IGCTQPRR
Sbjct: 22  KKLLPITKYRNQLLYAVEQNQITIVLGHTGCGKTTQIPQFLYEAGWASQNGIIGCTQPRR 81

Query: 304 LAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPLLSKY 483
           L  ++V+ R              Y+I+F+   +   T IK++TDG+L+ E+  DPLL +Y
Sbjct: 82  LVAKSVSERVSLELNSPPGSLCGYSIQFDHNVSE-KTKIKYMTDGILLNEIFFDPLLERY 140

Query: 484 SVIMIDEAHERSISTDILLGLLKKIQRLR 570
           S++++DE HER++STD+LLG+LK+I   R
Sbjct: 141 SIVILDEVHERTLSTDLLLGVLKRILEKR 169
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>DHX8_HUMAN (Q14562) ATP-dependent RNA helicase DHX8 (EC 3.6.1.-) (DEAH box|
            protein 8) (RNA helicase HRH1)
          Length = 1220

 Score =  147 bits (372), Expect = 2e-35
 Identities = 76/149 (51%), Positives = 105/149 (70%)
 Frame = +1

Query: 124  RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRR 303
            R+ LP+YK ++ ++  V  +   I++GETGSGK+TQI QYL EAG+   G+ IGCTQPRR
Sbjct: 562  RESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGK-IGCTQPRR 620

Query: 304  LAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPLLSKY 483
            +A  +VA R              YTIRFED T+P  T+IK++TDG+L+RE + DP L++Y
Sbjct: 621  VAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPE-TVIKYMTDGMLLRECLIDPDLTQY 679

Query: 484  SVIMIDEAHERSISTDILLGLLKKIQRLR 570
            ++IM+DEAHER+I TD+L GLLKK  + R
Sbjct: 680  AIIMLDEAHERTIHTDVLFGLLKKTVQKR 708
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>PRP22_YEAST (P24384) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22|
           (EC 3.6.1.-)
          Length = 1145

 Score =  147 bits (370), Expect = 3e-35
 Identities = 80/150 (53%), Positives = 100/150 (66%)
 Frame = +1

Query: 124 RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRR 303
           RQ LPVY  R  ++  V  +   +IVGETGSGK+TQI QYL E G++  G +IGCTQPRR
Sbjct: 480 RQTLPVYAMRSELIQAVRDNQFLVIVGETGSGKTTQITQYLDEEGFSNYG-MIGCTQPRR 538

Query: 304 LAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPLLSKY 483
           +A  +VA R              YTIRFED T P  T IK++TDG+L RE + DP +SKY
Sbjct: 539 VAAVSVAKRVAEEVGCKVGHDVGYTIRFEDVTGPD-TRIKYMTDGMLQREALLDPEMSKY 597

Query: 484 SVIMIDEAHERSISTDILLGLLKKIQRLRP 573
           SVIM+DEAHER+++TD+L  LLKK    RP
Sbjct: 598 SVIMLDEAHERTVATDVLFALLKKAAIKRP 627
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>PRP16_SCHPO (Q9P774) Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16|
           (EC 3.6.1.-)
          Length = 1173

 Score =  140 bits (354), Expect = 2e-33
 Identities = 73/145 (50%), Positives = 100/145 (68%)
 Frame = +1

Query: 124 RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRR 303
           R+ LP +  R+ +L ++  +   I+VGETGSGK+TQ+ Q+L E G+   G +IGCTQPRR
Sbjct: 489 REFLPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQLAQFLYEDGYHRNG-MIGCTQPRR 547

Query: 304 LAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPLLSKY 483
           +A  +VA R              Y+IRFED T P  T+IK++TDGVL+RE +    L KY
Sbjct: 548 VAAMSVAKRVSEEMGVRLGSTVGYSIRFEDVTGPD-TVIKYMTDGVLLRESLMQNNLEKY 606

Query: 484 SVIMIDEAHERSISTDILLGLLKKI 558
           SVI++DEAHERS++TDIL+GLLKK+
Sbjct: 607 SVIIMDEAHERSLNTDILMGLLKKV 631
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>DHX15_ARATH (O22899) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase (EC 3.6.1.-)
          Length = 729

 Score =  140 bits (354), Expect = 2e-33
 Identities = 76/155 (49%), Positives = 106/155 (68%), Gaps = 5/155 (3%)
 Frame = +1

Query: 124 RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEG---GR--LIGC 288
           R+ LPV+  +   L  +  + T I+VGETGSGK+TQIPQ++ +A  A+    GR  L+GC
Sbjct: 62  RRDLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVADNSDKGRKWLVGC 121

Query: 289 TQPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDP 468
           TQPRR+A  +V+ R              Y+IRFED T+   TM+K+LTDG+L+RE M DP
Sbjct: 122 TQPRRVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTS-SRTMLKYLTDGMLLREAMADP 180

Query: 469 LLSKYSVIMIDEAHERSISTDILLGLLKKIQRLRP 573
           LL +Y VI++DEAHER+++TD+L GLLK++ R RP
Sbjct: 181 LLERYKVIILDEAHERTLATDVLFGLLKEVLRNRP 215
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>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase mog-5 (EC 3.6.1.-) (Sex determination protein
           mog-5) (Masculinization of germ line protein 5)
          Length = 1200

 Score =  138 bits (347), Expect = 1e-32
 Identities = 74/150 (49%), Positives = 100/150 (66%)
 Frame = +1

Query: 124 RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRR 303
           R+ LP++  +K ++  +  +   ++VGETGSGK+TQ+ QY  EAG    G+ IGCTQPRR
Sbjct: 537 RESLPIFALKKNLMEAMIDNQILVVVGETGSGKTTQMTQYAIEAGLGRRGK-IGCTQPRR 595

Query: 304 LAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPLLSKY 483
           +A  +VA R              YTIRFED T+   T+IK++TDG+L+RE + DP LS Y
Sbjct: 596 VAAMSVAKRVAEEYGCKLGTDVGYTIRFEDCTSQD-TIIKYMTDGMLLRECLIDPDLSGY 654

Query: 484 SVIMIDEAHERSISTDILLGLLKKIQRLRP 573
           S+IM+DEAHER+I TD+L GLLK   R RP
Sbjct: 655 SLIMLDEAHERTIHTDVLFGLLKAAARKRP 684
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>MOG1_CAEEL (P34498) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase mog-1 (EC 3.6.1.-) (Sex determination protein
           mog-1) (Masculinization of germ line protein 1)
          Length = 1131

 Score =  138 bits (347), Expect = 1e-32
 Identities = 70/149 (46%), Positives = 103/149 (69%)
 Frame = +1

Query: 112 LERLRQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCT 291
           +++ R+ LPV+  R+ ++ ++  +   IIVGETGSGK+TQ+ QYL E G+ + G LIGCT
Sbjct: 434 IKQQREYLPVFACRQKMMNVIRENNVVIIVGETGSGKTTQLAQYLLEDGFGDSG-LIGCT 492

Query: 292 QPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPL 471
           QPRR+A  +VA R              Y IRFED T+   T+IK++TDG+L+RE + D  
Sbjct: 493 QPRRVAAMSVARRVADEMGVDLGQDVGYAIRFEDCTSE-KTIIKYMTDGILLRECLGDGS 551

Query: 472 LSKYSVIMIDEAHERSISTDILLGLLKKI 558
           L +YS I++DEAHERS++TD+L GLL+++
Sbjct: 552 LDQYSAIIMDEAHERSLNTDVLFGLLREV 580
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>PRP16_YEAST (P15938) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16|
           (EC 3.6.1.-)
          Length = 1071

 Score =  136 bits (342), Expect = 5e-32
 Identities = 69/148 (46%), Positives = 99/148 (66%), Gaps = 1/148 (0%)
 Frame = +1

Query: 112 LERLRQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWA-EGGRLIGC 288
           ++  +++LPV++ R  +L L+  +   +I+GETGSGK+TQ+ QYL E G+A + G+ I  
Sbjct: 343 IKHTKEQLPVFRCRSQLLSLIRENQVVVIIGETGSGKTTQLAQYLYEEGYANDRGKSIVV 402

Query: 289 TQPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDP 468
           TQPRR+A  +VA R              Y+IRFED T+   T +KF+TDG+L+RE + D 
Sbjct: 403 TQPRRVAAISVAKRVAMEMQVPLGKEVGYSIRFEDVTDSECTKLKFVTDGILLRETLLDD 462

Query: 469 LLSKYSVIMIDEAHERSISTDILLGLLK 552
            L KYS ++IDEAHERS++TDILLG  K
Sbjct: 463 TLDKYSCVIIDEAHERSLNTDILLGFFK 490
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>DHX15_MOUSE (O35286) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase DHX15 (EC 3.6.1.-) (DEAH box protein 15)
          Length = 795

 Score =  135 bits (341), Expect = 6e-32
 Identities = 70/151 (46%), Positives = 103/151 (68%), Gaps = 2/151 (1%)
 Frame = +1

Query: 124 RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGG--RLIGCTQP 297
           R +LPV++Y+     ++ RH + ++VGETGSGK+TQIPQ+  E   +  G  R + CTQP
Sbjct: 134 RLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWCVEYMRSLPGPKRGVACTQP 193

Query: 298 RRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPLLS 477
           RR+A  +VA R              Y+IRFED  +   T++K++TDG+L+RE M DPLL 
Sbjct: 194 RRVAAMSVAQRVADEMDVMLGQEVGYSIRFED-CSSAKTILKYMTDGMLLREAMNDPLLE 252

Query: 478 KYSVIMIDEAHERSISTDILLGLLKKIQRLR 570
           +Y VI++DEAHER+++TDIL+G+LK++ R R
Sbjct: 253 RYGVIILDEAHERTLATDILMGVLKEVVRQR 283
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>DHX15_HUMAN (O43143) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase DHX15 (EC 3.6.1.-) (DEAH box protein 15)
           (ATP-dependent RNA helicase #46)
          Length = 795

 Score =  135 bits (341), Expect = 6e-32
 Identities = 70/151 (46%), Positives = 103/151 (68%), Gaps = 2/151 (1%)
 Frame = +1

Query: 124 RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGG--RLIGCTQP 297
           R +LPV++Y+     ++ RH + ++VGETGSGK+TQIPQ+  E   +  G  R + CTQP
Sbjct: 134 RLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWCVEYMRSLPGPKRGVACTQP 193

Query: 298 RRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPLLS 477
           RR+A  +VA R              Y+IRFED  +   T++K++TDG+L+RE M DPLL 
Sbjct: 194 RRVAAMSVAQRVADEMDVMLGQEVGYSIRFED-CSSAKTILKYMTDGMLLREAMNDPLLE 252

Query: 478 KYSVIMIDEAHERSISTDILLGLLKKIQRLR 570
           +Y VI++DEAHER+++TDIL+G+LK++ R R
Sbjct: 253 RYGVIILDEAHERTLATDILMGVLKEVVRQR 283
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>PRP16_HUMAN (Q92620) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16|
           (EC 3.6.1.-) (ATP-dependent RNA helicase DHX38) (DEAH
           box protein 38)
          Length = 1227

 Score =  135 bits (339), Expect = 1e-31
 Identities = 67/145 (46%), Positives = 99/145 (68%)
 Frame = +1

Query: 124 RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRR 303
           RQ LP++  ++ +L ++  +   I+VGETGSGK+TQ+ QYL E G+ + G +IGCTQPRR
Sbjct: 529 RQYLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYG-MIGCTQPRR 587

Query: 304 LAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPLLSKY 483
           +A  +VA R              Y IRFED T+   T+IK++TDG+L+RE + +  L  Y
Sbjct: 588 VAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSEN-TLIKYMTDGILLRESLREADLDHY 646

Query: 484 SVIMIDEAHERSISTDILLGLLKKI 558
           S I++DEAHERS++TD+L GLL+++
Sbjct: 647 SAIIMDEAHERSLNTDVLFGLLREV 671
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>YKQ0_CAEEL (P34305) Putative ATP-dependent RNA helicase C06E1.10 in chromosome|
           III (EC 3.6.1.-)
          Length = 1148

 Score =  134 bits (337), Expect = 2e-31
 Identities = 79/184 (42%), Positives = 109/184 (59%), Gaps = 4/184 (2%)
 Frame = +1

Query: 31  DDEEGG---VLFLPTNTXXXXXXXXXXXXX-LERLRQRLPVYKYRKAILYLVERHGTTII 198
           DDEE     +L LPT T              +++ R  LP++     I+  +  +  T++
Sbjct: 198 DDEESDNEDILALPTTTVINRKKVIVERSKEIQKSRAELPIFAEEMRIVEAINENLVTVV 257

Query: 199 VGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRXXXXXXXXXXXXXXYT 378
            GETGSGK+TQIPQ+L EAG+A  G LIG T+PRR+A   +A R              Y 
Sbjct: 258 CGETGSGKTTQIPQFLYEAGYASEGELIGITEPRRVAAIAMAQR--VGVELAKPDEVSYQ 315

Query: 379 IRFEDETNPGMTMIKFLTDGVLIREMMEDPLLSKYSVIMIDEAHERSISTDILLGLLKKI 558
           IR+E  T    T I F+TDGVL++EM +D +L KYSVI+IDEAHERS+ +D+L+G+L +I
Sbjct: 316 IRYEG-TRSETTNILFMTDGVLMKEMEQDVMLKKYSVILIDEAHERSMYSDVLIGMLSRI 374

Query: 559 QRLR 570
             LR
Sbjct: 375 VPLR 378
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>DHX33_MOUSE (Q80VY9) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)|
           (DEAH box protein 33)
          Length = 698

 Score =  134 bits (337), Expect = 2e-31
 Identities = 71/153 (46%), Positives = 100/153 (65%)
 Frame = +1

Query: 112 LERLRQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCT 291
           LE  R+ LP+++ R  +L  +      +++GETGSGK+TQIPQYL E G +  G +I  T
Sbjct: 58  LELQRRSLPIFRARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQG-IIAVT 116

Query: 292 QPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPL 471
           QPRR+A  ++A+R              YT+RFED T+   T IKFLTDG+L+RE + D L
Sbjct: 117 QPRRVAAISLATRVSDEKRTELGKLVGYTVRFEDVTSED-TRIKFLTDGMLLREAISDSL 175

Query: 472 LSKYSVIMIDEAHERSISTDILLGLLKKIQRLR 570
           L KYS +++DEAHER+I TD+L G++K  Q+ R
Sbjct: 176 LRKYSCVILDEAHERTIHTDVLFGVVKTAQKRR 208
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>PRH1_SCHPO (Q03319) Probable ATP-dependent RNA helicase prh1 (EC 3.6.1.-)|
          Length = 719

 Score =  132 bits (333), Expect = 5e-31
 Identities = 66/150 (44%), Positives = 100/150 (66%)
 Frame = +1

Query: 124 RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRR 303
           R+ LP+++    +   ++ +   ++VGETGSGKSTQIPQ+L E  +A+ G  +  TQPRR
Sbjct: 93  RKNLPIWEAHDTLCQQIQDNRVIVVVGETGSGKSTQIPQFLNECPYAQEG-CVAITQPRR 151

Query: 304 LAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPLLSKY 483
           +A   +A R              Y+IRF+D T+   T IK+LTDG+L+RE++ DP+LS+Y
Sbjct: 152 VAAVNLAKRVAAEQGCRLGEQVGYSIRFDDTTSK-KTRIKYLTDGMLLRELINDPILSQY 210

Query: 484 SVIMIDEAHERSISTDILLGLLKKIQRLRP 573
             +++DEAHER++ TD+LLG +KKI + RP
Sbjct: 211 HTLILDEAHERTLMTDMLLGFVKKIIKKRP 240
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>DHX15_CAEEL (Q20875) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase F56D2.6 (EC 3.6.1.-)
          Length = 739

 Score =  132 bits (331), Expect = 9e-31
 Identities = 71/156 (45%), Positives = 102/156 (65%), Gaps = 7/156 (4%)
 Frame = +1

Query: 124 RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKE------AGWAEG-GRLI 282
           R +LPV++Y++  + L+  +    +VGETGSGK+TQIPQ+  E       G   G  RL+
Sbjct: 73  RSQLPVWEYKEKFMELLRNNQCITLVGETGSGKTTQIPQWAVEFMKQQQQGQPPGQARLV 132

Query: 283 GCTQPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMME 462
            CTQPRR+A  +VA+R              Y+IRFED  +   T++K+ TDG+L+RE M 
Sbjct: 133 ACTQPRRVAAMSVATRVAEEMDVVLGQEVGYSIRFEDCISE-RTVLKYCTDGMLLREAMN 191

Query: 463 DPLLSKYSVIMIDEAHERSISTDILLGLLKKIQRLR 570
            PLL KY V+++DEAHER+++TDIL+GL+K+I R R
Sbjct: 192 SPLLDKYKVLILDEAHERTLATDILMGLIKEIVRNR 227
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>PRP43_YEAST (P53131) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43|
           (EC 3.6.1.-) (Helicase JA1)
          Length = 767

 Score =  132 bits (331), Expect = 9e-31
 Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 2/154 (1%)
 Frame = +1

Query: 118 RLRQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYL--KEAGWAEGGRLIGCT 291
           ++R+ LPV+  R   L L + +   + VGETGSGK+TQIPQ++   E    E  + + CT
Sbjct: 88  KIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQ-VACT 146

Query: 292 QPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPL 471
           QPRR+A  +VA R              Y+IRFE++T+   T++K++TDG+L+RE MED  
Sbjct: 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTS-NKTILKYMTDGMLLREAMEDHD 205

Query: 472 LSKYSVIMIDEAHERSISTDILLGLLKKIQRLRP 573
           LS+YS I++DEAHER+++TDIL+GLLK++ + RP
Sbjct: 206 LSRYSCIILDEAHERTLATDILMGLLKQVVKRRP 239
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>DHX15_SCHPO (O42945) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase prp43 (EC 3.6.1.-)
          Length = 735

 Score =  130 bits (327), Expect = 3e-30
 Identities = 68/151 (45%), Positives = 97/151 (64%), Gaps = 1/151 (0%)
 Frame = +1

Query: 124 RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAE-GGRLIGCTQPR 300
           R+ LPVY+ R+  L +   +   + VGETGSGK+TQIPQ++            I CTQPR
Sbjct: 72  RRELPVYQQREEFLKIYHENQIIVFVGETGSGKTTQIPQFVLYDELPHLTNTQIACTQPR 131

Query: 301 RLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPLLSK 480
           R+A  +VA R              Y IRFED + P  T++K++TDG+L+RE M D +LS+
Sbjct: 132 RVAAMSVAKRVADEMDVDLGEEVGYNIRFEDCSGPN-TLLKYMTDGMLLREAMTDHMLSR 190

Query: 481 YSVIMIDEAHERSISTDILLGLLKKIQRLRP 573
           YS I++DEAHER+++TDIL+GL+K++   RP
Sbjct: 191 YSCIILDEAHERTLATDILMGLMKRLATRRP 221
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>KZ_DROME (O46072) Probable ATP-dependent RNA helicase kurz (EC 3.6.1.-)|
          Length = 1192

 Score =  130 bits (326), Expect = 3e-30
 Identities = 71/153 (46%), Positives = 100/153 (65%)
 Frame = +1

Query: 112 LERLRQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCT 291
           ++  R RLP+    + ++  +  +   I+ GETGSGK+TQ+PQ+L EAG+A+  ++IG T
Sbjct: 253 VQNARLRLPILAEEQQVMETINENPIVIVAGETGSGKTTQLPQFLYEAGYAQH-KMIGVT 311

Query: 292 QPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPL 471
           +PRR+A   ++ R              Y IRFE    P  T IKF+TDGVL++E+  D L
Sbjct: 312 EPRRVAAIAMSKRVAHEMNLPESEVS-YLIRFEGNVTPA-TRIKFMTDGVLLKEIETDFL 369

Query: 472 LSKYSVIMIDEAHERSISTDILLGLLKKIQRLR 570
           LSKYSVI++DEAHERS+ TDIL+GLL +I  LR
Sbjct: 370 LSKYSVIILDEAHERSVYTDILVGLLSRIVPLR 402
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>DHX33_HUMAN (Q9H6R0) Putative ATP-dependent RNA helicase DHX33 (EC 3.6.1.-)|
           (DEAH box protein 33)
          Length = 707

 Score =  129 bits (324), Expect = 6e-30
 Identities = 69/153 (45%), Positives = 99/153 (64%)
 Frame = +1

Query: 112 LERLRQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCT 291
           +E  R+ LP+ + R  +L  +      +++GETGSGK+TQIPQYL E G +  G +I  T
Sbjct: 67  VELQRRSLPILQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQG-IIAVT 125

Query: 292 QPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPL 471
           QPRR+A  ++A+R              YT+RF+D T+   T IKFLTDG+L+RE + D L
Sbjct: 126 QPRRVAAISLATRVSDEKRTELGKLVGYTVRFDDVTSED-TGIKFLTDGMLLREAISDSL 184

Query: 472 LSKYSVIMIDEAHERSISTDILLGLLKKIQRLR 570
           L KYS +++DEAHER+I TD+L G++K  Q+ R
Sbjct: 185 LRKYSCVILDEAHERTIHTDVLFGVVKAAQKRR 217
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>DHX37_HUMAN (Q8IY37) Probable ATP-dependent RNA helicase DHX37 (EC 3.6.1.-)|
           (DEAH box protein 37)
          Length = 1157

 Score =  126 bits (317), Expect = 4e-29
 Identities = 67/153 (43%), Positives = 96/153 (62%)
 Frame = +1

Query: 112 LERLRQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCT 291
           ++  R +LP+    + I+  V  H   I+ GETGSGK+TQ+PQ+L EAG++    +IG T
Sbjct: 245 MQEERLKLPILSEEQVIMEAVAEHPIVIVCGETGSGKTTQVPQFLYEAGFSSEDSIIGVT 304

Query: 292 QPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPL 471
           +PRR+A   ++ R              Y IR+E       T IKF+TDGVL++E+ +D L
Sbjct: 305 EPRRVAAVAMSQRVAKEMNLSQRVVS-YQIRYEGNVTEE-TRIKFMTDGVLLKEIQKDFL 362

Query: 472 LSKYSVIMIDEAHERSISTDILLGLLKKIQRLR 570
           L +Y V++IDEAHERS+ TDIL+GLL +I  LR
Sbjct: 363 LLRYKVVIIDEAHERSVYTDILIGLLSRIVTLR 395
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>YK16_SCHPO (Q9HDY4) Putative ATP-dependent RNA helicase PB1A10.06c (EC|
           3.6.1.-)
          Length = 1183

 Score =  126 bits (316), Expect = 5e-29
 Identities = 70/157 (44%), Positives = 98/157 (62%), Gaps = 4/157 (2%)
 Frame = +1

Query: 112 LERLRQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWA----EGGRL 279
           ++  R  LP+    + I+  +  +   II G TGSGK+TQ+PQ+L EAG++    E   +
Sbjct: 391 IQESRLALPIVAEEQRIMEQIFANDVVIICGATGSGKTTQLPQFLFEAGFSSPESENPGM 450

Query: 280 IGCTQPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMM 459
           I  TQPRR+A  ++A R              Y IRF+   NP  T IKF+TDG+L+RE+ 
Sbjct: 451 IAITQPRRVAAVSIAKRVSEELTGFSSKVS-YQIRFDSTINPD-TAIKFMTDGILLRELS 508

Query: 460 EDPLLSKYSVIMIDEAHERSISTDILLGLLKKIQRLR 570
            D LL+ YS +++DEAHERS++TDILLGLL +I RLR
Sbjct: 509 SDFLLTAYSAVIVDEAHERSVNTDILLGLLSRIVRLR 545
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>DHR1_YEAST (Q04217) Probable ATP-dependent RNA helicase DHR1 (EC 3.6.1.-)|
           (DEAH box RNA helicase DHR1) (Extracellular matrix
           protein 16)
          Length = 1267

 Score =  125 bits (315), Expect = 7e-29
 Identities = 72/158 (45%), Positives = 99/158 (62%), Gaps = 5/158 (3%)
 Frame = +1

Query: 112 LERLRQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGR----- 276
           +++ R +LPV+     I+  +  +   II GETGSGK+TQ+PQ+L EAG+          
Sbjct: 384 IQKARIQLPVFGEEHKIMEAIHHNDVVIICGETGSGKTTQVPQFLYEAGFGAEDSPDYPG 443

Query: 277 LIGCTQPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREM 456
           ++G TQPRR+A  ++A R              Y IRF D T    T +KF+TDGVL+REM
Sbjct: 444 MVGITQPRRVAAVSMAERVANELGDHGHKVG-YQIRF-DSTAKEDTKVKFMTDGVLLREM 501

Query: 457 MEDPLLSKYSVIMIDEAHERSISTDILLGLLKKIQRLR 570
           M D  L+KYS I+IDEAHER+I+TDIL+G+L +  RLR
Sbjct: 502 MHDFKLTKYSSIIIDEAHERNINTDILIGMLSRCVRLR 539
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>DHR2_YEAST (P36009) Probable ATP-dependent RNA helicase DHR2 (EC 3.6.1.-)|
           (DEAH box RNA helicase DHR2) (Helicase JA2)
          Length = 735

 Score =  125 bits (313), Expect = 1e-28
 Identities = 69/156 (44%), Positives = 103/156 (66%), Gaps = 2/156 (1%)
 Frame = +1

Query: 112 LERLRQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGW-AEGGRLIGC 288
           L ++R+ LPVY++++ I+  +E +  T+++GETGSGKSTQIPQ++ E  +  +    I  
Sbjct: 74  LLKMRETLPVYQHKREIMSYIESNPVTVLIGETGSGKSTQIPQFVLEKLYDTKKHGSIAV 133

Query: 289 TQPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDP 468
           TQPRR+A   +A+R              Y++RF D T    T +K+LTDG+L+RE+M + 
Sbjct: 134 TQPRRVAAINLATRVAQEHGCKLGEQVGYSVRF-DNTTTTRTRLKYLTDGMLLRELMMNS 192

Query: 469 LLSKYSVIMIDEAHERSISTDILLGLLKK-IQRLRP 573
            L +YSVI+IDEAHER++ TD++LG LK  IQ  RP
Sbjct: 193 DLREYSVIVIDEAHERTVLTDLILGFLKSLIQGPRP 228
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>HRPA_ECOLI (P43329) ATP-dependent RNA helicase hrpA (EC 3.6.1.-)|
          Length = 1300

 Score =  122 bits (306), Expect = 7e-28
 Identities = 67/147 (45%), Positives = 91/147 (61%)
 Frame = +1

Query: 133 LPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAV 312
           LPV + ++ IL  +  H   I+ GETGSGK+TQ+P+   E G    G LIG TQPRRLA 
Sbjct: 77  LPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKG-LIGHTQPRRLAA 135

Query: 313 QTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPLLSKYSVI 492
           +TVA+R              Y +RF D  +   TM+K +TDG+L+ E+ +D LL +Y  I
Sbjct: 136 RTVANRIAEELKTEPGGCIGYKVRFSDHVSDN-TMVKLMTDGILLAEIQQDRLLMQYDTI 194

Query: 493 MIDEAHERSISTDILLGLLKKIQRLRP 573
           +IDEAHERS++ D LLG LK++   RP
Sbjct: 195 IIDEAHERSLNIDFLLGYLKELLPRRP 221
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>DHX34_HUMAN (Q14147) Probable ATP-dependent RNA helicase DHX34 (EC 3.6.1.-)|
           (DEAH box protein 34)
          Length = 576

 Score =  120 bits (302), Expect = 2e-27
 Identities = 62/154 (40%), Positives = 91/154 (59%)
 Frame = +1

Query: 112 LERLRQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCT 291
           L+R R  LP+ +Y   IL  ++ H   ++ G+TG GKSTQ+PQYL  AG++     + CT
Sbjct: 155 LQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLLAAGFSH----VACT 210

Query: 292 QPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPL 471
           QPRR+A  ++A R              Y IRFE  T    T I FLT G+L+R++  +P 
Sbjct: 211 QPRRIACISLAKRVGFESLSQYGSQVGYQIRFES-TRSAATKIVFLTVGLLLRQIQREPS 269

Query: 472 LSKYSVIMIDEAHERSISTDILLGLLKKIQRLRP 573
           L +Y V+++DE HER +  D LLG+L+++   RP
Sbjct: 270 LPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRP 303
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>DHX34_MOUSE (Q9DBV3) Probable ATP-dependent RNA helicase DHX34 (EC 3.6.1.-)|
           (DEAH box protein 34)
          Length = 1145

 Score =  120 bits (301), Expect = 3e-27
 Identities = 62/154 (40%), Positives = 91/154 (59%)
 Frame = +1

Query: 112 LERLRQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCT 291
           L+R R  LP+ +Y   IL  ++ H   ++ G+TG GKSTQ+PQYL  AG++     + CT
Sbjct: 157 LQRERAALPIAQYGNRILQTLKEHQVVVVAGDTGCGKSTQVPQYLLAAGFSH----VACT 212

Query: 292 QPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPL 471
           QPRR+A  ++A R              Y IRFE  T    T I FLT G+L+R++  +P 
Sbjct: 213 QPRRIACISLAKRVGFESLSQYGSQVGYQIRFES-TRSAATKIVFLTVGLLLRQIQREPS 271

Query: 472 LSKYSVIMIDEAHERSISTDILLGLLKKIQRLRP 573
           L +Y V+++DE HER +  D LLG+L+++   RP
Sbjct: 272 LPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRP 305
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>HRPA_HAEIN (P45018) ATP-dependent RNA helicase hrpA homolog (EC 3.6.1.-)|
          Length = 1304

 Score =  115 bits (289), Expect = 7e-26
 Identities = 59/144 (40%), Positives = 90/144 (62%)
 Frame = +1

Query: 127 QRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRL 306
           + LPV + +  I  L+  H   ++ GETGSGK+TQ+P+   E G+   G +IG TQPRR+
Sbjct: 81  ESLPVSQRKVEIQKLISEHQVIVVAGETGSGKTTQLPKMCLELGFGNLG-MIGHTQPRRI 139

Query: 307 AVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPLLSKYS 486
           A ++VA+R              Y +RF D+ +   T IK +TDG+L+ E+  D  L++YS
Sbjct: 140 AARSVAARIAEELETELGGLVGYKVRFNDQISDN-TQIKLMTDGILLAEIQNDRFLNQYS 198

Query: 487 VIMIDEAHERSISTDILLGLLKKI 558
            ++IDEAHERS++ D +LG LK++
Sbjct: 199 CLIIDEAHERSLNNDFILGYLKQL 222
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>DHX57_HUMAN (Q6P158) Putative ATP-dependent RNA helicase DHX57 (EC 3.6.1.-)|
           (DEAH box protein 57)
          Length = 1386

 Score = 95.1 bits (235), Expect = 1e-19
 Identities = 59/153 (38%), Positives = 81/153 (52%), Gaps = 3/153 (1%)
 Frame = +1

Query: 124 RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKE---AGWAEGGRLIGCTQ 294
           RQ LP ++ R+ IL L+ +H   +I G TG GK+TQIPQ++ +    G  E    I CTQ
Sbjct: 541 RQSLPAWEERETILNLLRKHQVVVISGMTGCGKTTQIPQFILDDSLNGPPEKVANIICTQ 600

Query: 295 PRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPLL 474
           PRR++  +VA R              Y IR E       T + + T GVL+R +  D  L
Sbjct: 601 PRRISAISVAERVAKERAERVGLTVGYQIRLE-SVKSSATRLLYCTTGVLLRRLEGDTAL 659

Query: 475 SKYSVIMIDEAHERSISTDILLGLLKKIQRLRP 573
              S I++DE HER+  +D LL +LK I   RP
Sbjct: 660 QGVSHIIVDEVHERTEESDFLLLVLKDIVSQRP 692
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>DHX57_MOUSE (Q6P5D3) Putative ATP-dependent RNA helicase DHX57 (EC 3.6.1.-)|
           (DEAH box protein 57)
          Length = 1388

 Score = 90.9 bits (224), Expect = 2e-18
 Identities = 56/148 (37%), Positives = 79/148 (53%), Gaps = 3/148 (2%)
 Frame = +1

Query: 124 RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKE---AGWAEGGRLIGCTQ 294
           RQ LP ++ R+ IL L+ +H   +I G TG GK+TQIPQ++ +    G  E    I CTQ
Sbjct: 542 RQLLPAWEERETILKLLSKHQVVVISGMTGCGKTTQIPQFILDNSLNGPPERVANIICTQ 601

Query: 295 PRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPLL 474
           PRR++  +VA R              Y IR E       T + + T GVL+R +  D  L
Sbjct: 602 PRRISAISVAERVAKERAERVGLTVGYQIRLE-SVKSSATRLLYCTTGVLLRRLEGDATL 660

Query: 475 SKYSVIMIDEAHERSISTDILLGLLKKI 558
              + I++DE HER+  +D LL +LK I
Sbjct: 661 QGVTHIIVDEVHERTEESDFLLLVLKDI 688
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>DHX9_PONPY (Q5R874) ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear DNA|
           helicase II) (NDH II) (DEAH box protein 9)
          Length = 1269

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 4/154 (2%)
 Frame = +1

Query: 124 RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGC----T 291
           R+ LPV K+   IL  + ++   II G TG GK+TQ+PQ++ +  + +  R   C    T
Sbjct: 385 RELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILD-DFIQNDRAAECNIVVT 443

Query: 292 QPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPL 471
           QPRR++  +VA R              Y++RFE         I F T GVL+R++  +  
Sbjct: 444 QPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAG 501

Query: 472 LSKYSVIMIDEAHERSISTDILLGLLKKIQRLRP 573
           +   S +++DE HER I+TD LL +L+ + +  P
Sbjct: 502 IRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP 535
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>DHX9_HUMAN (Q08211) ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear DNA|
           helicase II) (NDH II) (DEAH box protein 9)
          Length = 1270

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 4/154 (2%)
 Frame = +1

Query: 124 RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGC----T 291
           R+ LPV K+   IL  + ++   II G TG GK+TQ+PQ++ +  + +  R   C    T
Sbjct: 385 RELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILD-DFIQNDRAAECNIVVT 443

Query: 292 QPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPL 471
           QPRR++  +VA R              Y++RFE         I F T GVL+R++  +  
Sbjct: 444 QPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAG 501

Query: 472 LSKYSVIMIDEAHERSISTDILLGLLKKIQRLRP 573
           +   S +++DE HER I+TD LL +L+ + +  P
Sbjct: 502 IRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP 535
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>DHX9_XENLA (Q68FK8) ATP-dependent RNA helicase A-like protein (EC 3.6.1.-)|
           (Nuclear DNA helicase II) (NDH II) (DEAH box protein 9)
          Length = 1262

 Score = 84.0 bits (206), Expect = 3e-16
 Identities = 52/154 (33%), Positives = 81/154 (52%), Gaps = 4/154 (2%)
 Frame = +1

Query: 124 RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGC----T 291
           R+ LPV K+ + I++ V      II G TG GK+TQ+PQY+ +  +    R   C    T
Sbjct: 387 RESLPVKKFEEEIMHAVHNSPVVIIRGATGCGKTTQVPQYILDE-YIRNDRAAQCNIVVT 445

Query: 292 QPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPL 471
           QPRR++  +VA R              Y++RFE         + F T GVL+R++  +  
Sbjct: 446 QPRRISAVSVAERVAFERGEEIGKSCGYSVRFESVLPRPHASMLFCTVGVLLRKL--ESG 503

Query: 472 LSKYSVIMIDEAHERSISTDILLGLLKKIQRLRP 573
           +   S +++DE HER I+TD LL +L+ + +  P
Sbjct: 504 IRGISHVIVDEIHERDINTDFLLVVLRDVIQAFP 537
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>DHX9_MOUSE (O70133) ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear DNA|
           helicase II) (NDH II) (DEAH box protein 9) (mHEL-5)
          Length = 1380

 Score = 83.2 bits (204), Expect = 5e-16
 Identities = 52/149 (34%), Positives = 78/149 (52%), Gaps = 4/149 (2%)
 Frame = +1

Query: 124 RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGC----T 291
           R+ LPV K+   IL  +  +   II G TG GK+TQ+PQY+ +  + +  R   C    T
Sbjct: 387 RELLPVKKFEAEILEAISSNSVVIIRGATGCGKTTQVPQYILD-DFIQNDRAAECNIVVT 445

Query: 292 QPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPL 471
           QPRR++   VA R              Y++RFE         I F T GVL+R++  +  
Sbjct: 446 QPRRISAVAVAERVAYERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAG 503

Query: 472 LSKYSVIMIDEAHERSISTDILLGLLKKI 558
           +   S +++DE HER I+TD LL +L+ +
Sbjct: 504 IRGISHVIVDEIHERDINTDFLLVVLRDV 532
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>DHX9_BOVIN (Q28141) ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear DNA|
           helicase II) (NDH II) (DEAH box protein 9)
          Length = 1287

 Score = 82.4 bits (202), Expect = 8e-16
 Identities = 52/154 (33%), Positives = 81/154 (52%), Gaps = 4/154 (2%)
 Frame = +1

Query: 124 RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGC----T 291
           R+ LPV K+   IL  + ++   II G TG GK+TQ+PQ++ +    +  R   C    T
Sbjct: 382 RELLPVKKFESEILEAISQNPVVIIRGATGCGKTTQVPQFILD-DCIQNDRAAECNIVVT 440

Query: 292 QPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPL 471
           QPRR++  +VA R              Y++RFE         I F T GVL+R++  +  
Sbjct: 441 QPRRISAVSVAERVAYERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAG 498

Query: 472 LSKYSVIMIDEAHERSISTDILLGLLKKIQRLRP 573
           +   S +++DE HER I+TD LL +L+ + +  P
Sbjct: 499 IRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP 532
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>DHX9_CAEEL (Q22307) Probable ATP-dependent RNA helicase A (EC 3.6.1.-)|
           (Nuclear DNA helicase II) (NDH II)
          Length = 1301

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 55/150 (36%), Positives = 82/150 (54%), Gaps = 5/150 (3%)
 Frame = +1

Query: 124 RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKE-----AGWAEGGRLIGC 288
           R  LPV +YR+ I+  V  +  T+I GETG GKSTQ+ Q+L E     +  A    ++  
Sbjct: 378 RGELPVAQYRENIVQTVAENRVTLIKGETGCGKSTQVAQFLLESFLENSNGASFNAVV-- 435

Query: 289 TQPRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDP 468
           +QPRR++  ++A R              Y +RF+  T      I F T GVL+R MME+ 
Sbjct: 436 SQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLR-MMENG 494

Query: 469 LLSKYSVIMIDEAHERSISTDILLGLLKKI 558
           L    S ++IDE HER + TD +L +L+++
Sbjct: 495 LRG-ISHVIIDEIHERDVDTDFVLIVLREM 523
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>MLE_DROME (P24785) Dosage compensation regulator (EC 3.6.1.-) (ATP-dependent|
           RNA helicase mle) (Protein male-less) (Protein no action
           potential)
          Length = 1293

 Score = 76.6 bits (187), Expect = 5e-14
 Identities = 51/146 (34%), Positives = 75/146 (51%), Gaps = 3/146 (2%)
 Frame = +1

Query: 124 RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIPQYLKE---AGWAEGGRLIGCTQ 294
           R++LP+   R  IL  +  +   II G TG GK+TQI QY+ +        G   I  TQ
Sbjct: 381 REKLPIAAMRSEILTAINDNPVVIIRGNTGCGKTTQIAQYILDDYICSGQGGYANIYVTQ 440

Query: 295 PRRLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPLL 474
           PRR++  +VA R              Y++RFE         I F T GVL+R++  +  L
Sbjct: 441 PRRISAISVAERVARERCEQLGDTVGYSVRFESVFPRPYGAILFCTVGVLLRKL--EAGL 498

Query: 475 SKYSVIMIDEAHERSISTDILLGLLK 552
              S I++DE HER +++D LL +L+
Sbjct: 499 RGVSHIIVDEIHERDVNSDFLLVILR 524
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>DHX15_STRPU (O17438) Putative pre-mRNA-splicing factor ATP-dependent RNA|
           helicase PRP1 (EC 3.6.1.-) (Fragment)
          Length = 455

 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 31/51 (60%), Positives = 46/51 (90%)
 Frame = +1

Query: 418 IKFLTDGVLIREMMEDPLLSKYSVIMIDEAHERSISTDILLGLLKKIQRLR 570
           IK++TDG+L+RE M DPLL +Y VI++DEAHER+++TDIL+GLLK++++ R
Sbjct: 1   IKYMTDGMLLREGMTDPLLERYGVILLDEAHERTVATDILMGLLKEVEKQR 51
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>HRPB_ECOLI (P37024) ATP-dependent RNA helicase hrpB (EC 3.6.1.-)|
          Length = 809

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 1/145 (0%)
 Frame = +1

Query: 133 LPVYKYRKAILYLVERHGTTIIVGETGSGKSTQIP-QYLKEAGWAEGGRLIGCTQPRRLA 309
           LPV      +L  ++     ++   TG+GKST +P Q L   G    G++I   +PRRLA
Sbjct: 4   LPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHPGI--NGKII-LLEPRRLA 60

Query: 310 VQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDPLLSKYSV 489
            + VA R              Y +R ++   P  T ++ +T+GVL R +  DP LS   +
Sbjct: 61  ARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPN-TRLEVVTEGVLTRMIQRDPELSGVGL 119

Query: 490 IMIDEAHERSISTDILLGLLKKIQR 564
           +++DE HERS+  D+ L LL  +Q+
Sbjct: 120 VILDEFHERSLQADLALALLLDVQQ 144
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>POLG_BYMV (P17765) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral gen
          Length = 3056

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
 Frame = +1

Query: 193  IIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRXXXXXXXXXXXXXX 372
            ++ G  GSGKST +P YL   G      +I  T+P         +               
Sbjct: 1224 LVRGAVGSGKSTGLPFYLSNKGKV---LMIESTRP--------LAENVFKQLKSEPFYAS 1272

Query: 373  YTIRFEDETNPGMTMIKFLTDGVLIREMMEDP-LLSKYSVIMIDEAHERSISTDILLGLL 549
             T+R    T+ G + I  +T G  +     +P ++ +Y  ++IDE H    +    + LL
Sbjct: 1273 PTLRMRGTTSYGASPITIMTSGYALHYYANNPAMMKEYKFVIIDECHVHDANAIAFVSLL 1332

Query: 550  KK 555
            K+
Sbjct: 1333 KE 1334
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>NTP2_FOWPV (O72904) Nucleoside triphosphatase II (EC 3.6.1.15) (Nucleoside|
           triphosphate phosphohydrolase II) (NPH II)
          Length = 682

 Score = 39.7 bits (91), Expect = 0.006
 Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 14/146 (9%)
 Frame = +1

Query: 160 ILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGG-------------RLIGCTQPR 300
           I  L+ +    ++ G TG GK++Q+P+ +    +  GG             R I  + PR
Sbjct: 180 IFELLRKRKQIVVTGSTGIGKTSQLPKVIMWYNYLFGGWDNLDRVRFDYISRPIVLSLPR 239

Query: 301 RLAVQTVASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIR-EMMEDPLLS 477
              V++                    +R+  +T           DG+++    +    LS
Sbjct: 240 VALVKSNGINFLQSLGFSDFEGSPVELRYGGKTEHTTRQ----HDGIVLSTNKLTSYSLS 295

Query: 478 KYSVIMIDEAHERSISTDILLGLLKK 555
            Y++I++DE HE     DI++ +L+K
Sbjct: 296 NYNIIIVDEIHEHDRIADIIISVLRK 321
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>POLG_BTMV (Q6XW15) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral gen
          Length = 3085

 Score = 38.9 bits (89), Expect = 0.010
 Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 1/124 (0%)
 Frame = +1

Query: 193  IIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRXXXXXXXXXXXXXX 372
            ++ G  GSGKST +P +L   G       +   +P R   + V  +              
Sbjct: 1251 VVRGAVGSGKSTGLPSHLSRKG------RVLLLEPTRPLAENVCKQLRKEPFHLSP---- 1300

Query: 373  YTIRFEDETNPGMTMIKFLTDGVLIREMMEDP-LLSKYSVIMIDEAHERSISTDILLGLL 549
             T+R    T  G + I  +T G  +     +P  L ++  IMIDE+H    ST     LL
Sbjct: 1301 -TLRMRGLTTFGSSNISVMTSGYALHFHANNPQRLEEFDFIMIDESHTMDSSTMAFYCLL 1359

Query: 550  KKIQ 561
            ++ +
Sbjct: 1360 REYE 1363
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>POLG_PEMVM (O56075) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3099

 Score = 38.1 bits (87), Expect = 0.018
 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
 Frame = +1

Query: 193  IIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRXXXXXXXXXXXXXX 372
            ++ G  GSGKST +P  L     A+ GR++   +P R   + V  +              
Sbjct: 1262 LVRGAVGSGKSTGLPHLL-----AQKGRVL-LLEPTRPLAENVCKQLRQAPFQQNP---- 1311

Query: 373  YTIRFEDETNPGMTMIKFLTDGVLIREMMEDPL-LSKYSVIMIDEAHERSIS 525
             T+R    T  G + I  +T G  +     +P  L +Y  +MIDE+H    S
Sbjct: 1312 -TLRMRGLTTFGSSNIVIMTSGFALHYYANNPTKLQEYDFVMIDESHTMDAS 1362
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>POLG_SBMVN (P21231) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3066

 Score = 37.0 bits (84), Expect = 0.040
 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 1/136 (0%)
 Frame = +1

Query: 157  AILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRXX 336
            A L     H   +I G  GSGKST +P +L + G       +   +P R   + V+ +  
Sbjct: 1234 ANLVATSSHTEFLIRGAVGSGKSTGLPHHLSKKG------KVLLLEPTRPLAENVSKQ-- 1285

Query: 337  XXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDP-LLSKYSVIMIDEAHE 513
                         T+R    +  G + I  +T G      + +P  LS +  I+IDE H 
Sbjct: 1286 ---LSFEPFYHNVTLRMRGMSKFGSSNIVVMTSGFAFHYYVNNPQQLSDFDFIIIDECHV 1342

Query: 514  RSISTDILLGLLKKIQ 561
            +   T      LK+ +
Sbjct: 1343 QDSPTIAFNCALKEFE 1358
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>POLG_PPVNA (P17766) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3125

 Score = 35.8 bits (81), Expect = 0.089
 Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 1/116 (0%)
 Frame = +1

Query: 181  HGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRXXXXXXXXXX 360
            H   +I G  GSGKST +P +L + G       +   +P R   + V  +          
Sbjct: 1246 HQDILIRGAVGSGKSTGLPFHLSKKGH------VLLIEPTRPLAENVCKQLRGQPFNVNP 1299

Query: 361  XXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDP-LLSKYSVIMIDEAHERSIS 525
                 T+R    +  G T I  +T G  +  +  +P  L  Y  I+ DE H    S
Sbjct: 1300 -----TLRMRGMSTFGSTPITVMTSGYALHFLANNPTYLDNYKCIIFDECHVHDAS 1350
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>POLG_PPVD (P13529) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral gen
          Length = 3141

 Score = 35.8 bits (81), Expect = 0.089
 Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 1/116 (0%)
 Frame = +1

Query: 181  HGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRXXXXXXXXXX 360
            H   +I G  GSGKST +P +L + G       +   +P R   + V  +          
Sbjct: 1247 HQDILIRGAVGSGKSTGLPFHLSKKGH------VLLIEPTRPLAENVCKQLRGQPFNVNP 1300

Query: 361  XXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDP-LLSKYSVIMIDEAHERSIS 525
                 T+R    +  G T I  +T G  +  +  +P  L  Y  I+ DE H    S
Sbjct: 1301 -----TLRMRGMSTFGSTPITVMTSGYALHFLANNPTYLDNYKCIIFDECHVHDAS 1351
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>POLG_PPVSK (Q84934) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3140

 Score = 35.8 bits (81), Expect = 0.089
 Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 1/116 (0%)
 Frame = +1

Query: 181  HGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRXXXXXXXXXX 360
            H   +I G  GSGKST +P +L + G       +   +P R   + V  +          
Sbjct: 1246 HQDILIRGAVGSGKSTGLPFHLSKKGH------VLLIEPTRPLAENVCKQLRGQPFNVNP 1299

Query: 361  XXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDP-LLSKYSVIMIDEAHERSIS 525
                 T+R    +  G T I  +T G  +  +  +P  L  Y  I+ DE H    S
Sbjct: 1300 -----TLRMRGMSTFGSTPITVMTSGYALHFLANNPTYLDNYKCIIFDECHVHDAS 1350
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>POLG_PPVRA (P17767) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3140

 Score = 35.8 bits (81), Expect = 0.089
 Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 1/116 (0%)
 Frame = +1

Query: 181  HGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRXXXXXXXXXX 360
            H   +I G  GSGKST +P +L + G       +   +P R   + V  +          
Sbjct: 1246 HQDILIRGAVGSGKSTGLPFHLSKKGH------VLLIEPTRPLAENVCKQLRGQPFNVNP 1299

Query: 361  XXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDP-LLSKYSVIMIDEAHERSIS 525
                 T+R    +  G T I  +T G  +  +  +P  L  Y  I+ DE H    S
Sbjct: 1300 -----TLRMRGMSTFGSTPITVMTSGYALHFLANNPTYLDNYKCIIFDECHVHDAS 1350
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>POLG_PVMA (Q85197) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral gen
          Length = 3059

 Score = 35.8 bits (81), Expect = 0.089
 Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 1/124 (0%)
 Frame = +1

Query: 181  HGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRXXXXXXXXXX 360
            H   ++ G  GSGKST +P +L + G       +   +P R   + V  +          
Sbjct: 1232 HTDIMLRGAVGSGKSTGLPYHLSKKG------TVLLLEPTRPLAENVTKQLKSDPFHVSP 1285

Query: 361  XXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMED-PLLSKYSVIMIDEAHERSISTDIL 537
                 T+R       G T I  +T G  +  +  +  +LS Y  I+IDE H    +   L
Sbjct: 1286 -----TLRMRGMAVFGSTPIHVMTTGFALHYLANNLKMLSTYDFIIIDEFHVHDSNAIAL 1340

Query: 538  LGLL 549
              LL
Sbjct: 1341 RNLL 1344
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>POLG_SBMVG (Q90069) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3066

 Score = 35.8 bits (81), Expect = 0.089
 Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 1/136 (0%)
 Frame = +1

Query: 157  AILYLVERHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRXX 336
            A L     H   +I G  GSGKST +P +L   G       +   +P R   + V+ +  
Sbjct: 1234 ANLVATSSHTEFLIRGAVGSGKSTGLPHHLSRKG------KVLLLEPTRPLAENVSKQ-- 1285

Query: 337  XXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDP-LLSKYSVIMIDEAHE 513
                         T+R    +  G + I  +T G        +P  LS +  I+IDE H 
Sbjct: 1286 ---LSFEPFYHNVTLRMRGLSKFGSSNIVVMTSGFAFHYYFNNPQQLSDFDFIIIDECHV 1342

Query: 514  RSISTDILLGLLKKIQ 561
            +   T      LK+ +
Sbjct: 1343 QDSPTIAFNCALKEFE 1358
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>POL1_BAMMN (P90245) Genome polyprotein 1 [Contains: Protein P3; 6 kDa protein|
           1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa
           protein 2 (6K2); Viral genome-linked protein (VPg);
           Nuclear inclusion protein A (EC 3.4.22.44) (NI-a) (NIa)
           (NIa-pro); Nuclea
          Length = 2258

 Score = 35.8 bits (81), Expect = 0.089
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
 Frame = +1

Query: 196 IVGETGSGKSTQIPQYLKEA--GWAEGGRLIGCTQPRRLAVQTVASRXXXXXXXXXXXXX 369
           +VG TGSGKST++P        G A   + +   +P R A   V S              
Sbjct: 450 VVGHTGSGKSTRLPTAYANCLKGLAGRKKNVLVCEPTRAATVNVTSGISQNFGRLVYG-- 507

Query: 370 XYTIRFEDETNPGMTMIKFLTDG-VLIREMMEDPLLSKYSVIMIDEAH 510
               R E  +N G   I+ +T G  L    +++  LS++  + +DE+H
Sbjct: 508 ----RHEGWSNLGDKTIQVMTYGSALAAWKVDNKFLSQFDAVFLDESH 551
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>POL1_BAYMJ (Q01206) Genome polyprotein 1 [Contains: Protein P3; 6 kDa protein|
           1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa
           protein 2 (6K2); Viral genome-linked protein (VPg);
           Nuclear inclusion protein A (EC 3.4.22.44) (NI-a) (NIa)
           (NIa-pro); Nuclea
          Length = 2410

 Score = 34.7 bits (78), Expect = 0.20
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
 Frame = +1

Query: 190 TIIVGETGSGKSTQIP-QYLKEAGWAEGGR-LIGCTQPRRLAVQTVASRXXXXXXXXXXX 363
           +++VG TGSGKST +P QY          R  I   +P + A + V +            
Sbjct: 483 SMVVGHTGSGKSTYLPVQYSNYLSTKSDRRQQILICEPTQAATENVCAGVAANLGRAVYG 542

Query: 364 XXXYTIRFEDETNPGMTMIKFLTDGVLIR-EMMEDPLLSKYSVIMIDEAH---ERSISTD 531
                 R E  +  G   I+ +T G  ++   M+   +S +  I +DEAH   E S+  +
Sbjct: 543 ------RHEGWSRMGDHCIQVMTYGSALQCHAMDPSFISTFDAIFLDEAHDVKEHSLVFE 596

Query: 532 ILLGLLKKIQR 564
            +    K +++
Sbjct: 597 SICDTFKSVRK 607
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>POL1_BAYMG (Q04574) Genome polyprotein 1 [Contains: Protein P3; 6 kDa protein|
           1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa
           protein 2 (6K2); Viral genome-linked protein (VPg);
           Nuclear inclusion protein A (EC 3.4.22.44) (NI-a) (NIa)
           (NIa-pro); Nuclea
          Length = 2412

 Score = 34.7 bits (78), Expect = 0.20
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
 Frame = +1

Query: 190 TIIVGETGSGKSTQIP-QYLKEAGWAEGGR-LIGCTQPRRLAVQTVASRXXXXXXXXXXX 363
           +++VG TGSGKST +P QY          R  I   +P + A + V +            
Sbjct: 483 SMVVGHTGSGKSTYLPVQYSNYLSTKSDRRQQILICEPTQAATENVCAGVAANLGRAVYG 542

Query: 364 XXXYTIRFEDETNPGMTMIKFLTDGVLIR-EMMEDPLLSKYSVIMIDEAH---ERSISTD 531
                 R E  +  G   I+ +T G  ++   M+   +S +  I +DEAH   E S+  +
Sbjct: 543 ------RHEGWSRMGDHCIQVMTYGSALQCHAMDPSFISTFDAIFLDEAHDVKEHSLVFE 596

Query: 532 ILLGLLKKIQR 564
            +    K +++
Sbjct: 597 SICDTFKSVRK 607
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>POLG_BCMVN (Q65399) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3066

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
 Frame = +1

Query: 193  IIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRXXXXXXXXXXXXXX 372
            +I G  GSGKST +P +L + G       +   +P R   + V+ +              
Sbjct: 1255 LIRGAVGSGKSTGLPHHLSKKG------KVLLLEPTRPLAENVSKQ-----LGRDPFFHA 1303

Query: 373  YTIRFEDETNPGMTMIKFLTDGVLIREMMEDP-LLSKYSVIMIDEAHERSISTDILLGLL 549
             T+R       G + I  +T G      + +P  LS +  I+IDE H    +T      L
Sbjct: 1304 VTLRMRGLNRFGSSNITVMTSGFAFHYYVNNPHQLSDFDFIIIDECHVLDSATIAFNCAL 1363

Query: 550  KKIQ 561
            K+ +
Sbjct: 1364 KEFE 1367
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>NTP2_MYXVL (Q9Q8Q2) Nucleoside triphosphatase II (EC 3.6.1.15) (Nucleoside|
           triphosphate phosphohydrolase II) (NPH II) (RNA helicase
           m44R)
          Length = 678

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 14/143 (9%)
 Frame = +1

Query: 178 RHGTTIIVGETGSGKSTQIPQYLKEAGWAEGG-------------RLIGCTQPRRLAVQT 318
           R    ++ G+TG GK++Q+P+ L    +  GG             + I  + PR   V+ 
Sbjct: 180 RRVPVVLTGDTGVGKTSQVPKLLLWFNYLFGGFTDLSTLTFEVQEKPIVLSLPRVALVKL 239

Query: 319 VASRXXXXXXXXXXXXXXYTIRFEDETNPGMTMIKFLTDGVLIR-EMMEDPLLSKYSVIM 495
            +                 +++F +         +F   G++     +    L KYS ++
Sbjct: 240 HSETLLTSLGFEEIHGSPVSLKFGN-MQERFVNTRFSRYGIVFSTHKITLNTLFKYSTVI 298

Query: 496 IDEAHERSISTDILLGLLKKIQR 564
           +DE HE   + DI++ + +K  R
Sbjct: 299 LDEVHEHDQTGDIIIAVCRKYIR 321
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>POLG_ZYMVC (P18479) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3080

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
 Frame = +1

Query: 184  GTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRXXXXXXXXXXX 363
            G  ++ G  GSGKST +P +L     A+ G+++   +P R   + V+ +           
Sbjct: 1243 GEFLVRGRVGSGKSTSLPAHL-----AKKGKVL-LLEPTRPLAENVSRQ-----LAGDPF 1291

Query: 364  XXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDP-LLSKYSVIMIDEAHERSIST 528
                T+R    +  G + I  +T G      + +P  L ++  ++IDE H    +T
Sbjct: 1292 FQNVTLRMRGLSCFGSSNITVMTSGFAFHYYVNNPHQLMEFDFVIIDECHVTDSAT 1347
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>POLG_ZYMVS (O36979) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3083

 Score = 32.7 bits (73), Expect = 0.75
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
 Frame = +1

Query: 184  GTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRXXXXXXXXXXX 363
            G  ++ G  GSGKST +P +L     A+ G+++   +P R   + V+ +           
Sbjct: 1246 GEFLVRGAVGSGKSTSLPAHL-----AKKGKVL-LLEPTRPLAENVSRQ-----LAGDPF 1294

Query: 364  XXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDP-LLSKYSVIMIDEAHERSIST 528
                T+R    +  G + I  +T G      + +P  L ++  ++IDE H    +T
Sbjct: 1295 FQNVTLRMRGLSCFGSSNITVMTSGFAFHYYVNNPHQLMEFDFVIIDECHVTDSAT 1350
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>MDR_PLAFF (P13568) Multidrug resistance protein (EC 3.6.3.44) (Chloroquine|
            resistance protein)
          Length = 1419

 Score = 32.7 bits (73), Expect = 0.75
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +1

Query: 124  RQRLPVYKYRKAILYLVERHGTTIIVGETGSGKST 228
            R  +P+YK    + +  +   TT IVGETGSGKST
Sbjct: 1138 RPNVPIYKN---LSFTCDSKKTTAIVGETGSGKST 1169
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>POLG_ZYMVR (Q89330) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3083

 Score = 32.3 bits (72), Expect = 0.98
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
 Frame = +1

Query: 184  GTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRXXXXXXXXXXX 363
            G  ++ G  GSGKST +P +L     A+ G+++   +P R   + V+ +           
Sbjct: 1246 GEFLVRGAVGSGKSTSLPAHL-----AKKGKVL-LLEPTRPLAENVSRQ-----LAGDPF 1294

Query: 364  XXXYTIRFEDETNPGMTMIKFLTDGVLIREMMEDP-LLSKYSVIMIDEAHERSIST 528
                T+R    +  G + I  +T G      + +P  + ++  I+IDE H    +T
Sbjct: 1295 FQNVTLRMRGLSCFGSSNITVMTSGYAFHYYVNNPHQMMEFDFIIIDECHVTDSAT 1350
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>YDG1_SCHPO (Q10491) Hypothetical protein C26F1.01 in chromosome I|
          Length = 928

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = -1

Query: 468 RIFHHFSNQYPICEKFYHGHARVCFILKSYCISYFFSKFHTNFFSYS*CNRLHSQSSWLG 289
           R+   FS+QY  C    +  +  C+IL     ++     HT+FF+      +H++     
Sbjct: 345 RVLSTFSDQYFHCNPDLYDSSDECYIL-----TFSLMILHTDFFN------IHNRQKMTR 393

Query: 288 ATYKSTTLSPTSLLKIL 238
           A + S T  PT L +IL
Sbjct: 394 AEFISNTNLPTILPEIL 410
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>RAD50_PYRAB (Q9UZC8) DNA double-strand break repair rad50 ATPase|
          Length = 880

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 127 QRLPVYKYRKAILYLVE-RHGTTIIVGETGSGKSTQIPQYLKEAGWAEGGRLIG 285
           + + VY +R     +V  R G  +I+G+ GSGKS+ +   L    W++  RL G
Sbjct: 4   EEVKVYNFRSHEETVVRFRKGINLIIGQNGSGKSSLLDAILVGLYWSKKLRLRG 57
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>YP96_CAEEL (Q09476) Hypothetical protein C28H8.6 in chromosome III|
          Length = 256

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
 Frame = -1

Query: 495 HNDTIFAQKRIFHHFSNQYPICEKFYH-GHARVCF----ILKSYCISYFFSKFHTNFFSY 331
           H    F     F H  N  P+CE+ YH     +C      +   C++    KFH   F  
Sbjct: 165 HCGVSFNGASFFEH--NGAPLCERHYHESRGSICSQCRGAINGRCVAAMGRKFHPEHFRC 222

Query: 330 S*CN 319
           S CN
Sbjct: 223 SYCN 226
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>POLG_TUMVJ (P89509) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3164

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
 Frame = +1

Query: 193  IIVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRXXXXXXXXXXXXXX 372
            +++G  GSGKST +P +L   G      L+  T+P    V    S+              
Sbjct: 1310 LLMGAVGSGKSTGLPYHLSRKG---NVLLLEPTRPLAENVHRQLSQAPFHQNT------- 1359

Query: 373  YTIRFEDETNPGMTMIKFLTDGVLIREMMEDPL-LSKYSVIMIDEAH 510
             T+R    T+ G   I  +T G  +     + + + ++  ++ DE H
Sbjct: 1360 -TLRMRGLTSFGSAPISVMTSGFALNYFANNRMRIEEFDFVIFDECH 1405
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>Y3190_CLOAB (Q97EC3) Putative ATP:guanido phosphotransferase CAC3190 (EC|
           2.7.3.-)
          Length = 340

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 14/52 (26%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
 Frame = -1

Query: 300 SWLGATYKSTTLSPTSLLKILRDLRGLA-ATRLADDDGRTMPLHQVEDGLAV 148
           +WL +  K   +  T+ +++ R+++G+    +L+DD+GR + + +++D L V
Sbjct: 3   NWLNSDLKDNDIVITTRIRLARNIKGIPFPDKLSDDEGRDV-VKKIKDTLIV 53
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>GSPE_VIBCH (P37093) General secretion pathway protein E (Type II traffic|
           warden ATPase) (Cholera toxin secretion protein epsE)
          Length = 503

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 169 LVER-HGTTIIVGETGSGKSTQIPQYLKEAGWAE 267
           L++R HG  ++ G TGSGKST +   L+E   +E
Sbjct: 252 LIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSE 285


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,596,239
Number of Sequences: 219361
Number of extensions: 1475606
Number of successful extensions: 5742
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 5344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5659
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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