ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63l19 |
|---|---|
| Clone Library Name | barley_pub |
>PSBS_SOLSG (Q9FPP4) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 99.8 bits (247), Expect(2) = 2e-21 Identities = 68/159 (42%), Positives = 80/159 (50%), Gaps = 3/159 (1%) Frame = +3 Query: 48 MAQSMLMSGVNGV--ASGRSLLQAARPSSASTPFXXXXXXXXXXXYYKHMPS-LSVRTMA 218 MAQ+ML++ V S SL++ +P S+ F S + T+A Sbjct: 1 MAQTMLLTANAKVDLRSKESLVERLKPKPLSSLFLPSLPLRFSSSTTNFSSSKFTSTTVA 60 Query: 219 LFGKSXXXXXXXXXXXXXXXXXEDXXXXXXXXXXXXKENELFVGRVAMIGFAASILGEAI 398 LF ED K+NELFVGRVAMIGFAAS+LGEAI Sbjct: 61 LFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAI 120 Query: 399 TGKGILSQLNLETGIPIYEAEPXXXXXXXXXXXGAIGAL 515 TGKGIL+QLNLETGIPIYEAEP GAIGAL Sbjct: 121 TGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGAL 159 Score = 67.8 bits (164), Expect = 2e-11 Identities = 32/46 (69%), Positives = 37/46 (80%) Frame = +3 Query: 327 KENELFVGRVAMIGFAASILGEAITGKGILSQLNLETGIPIYEAEP 464 K NELFVGR+A +G A SI+GE ITGKG L+QLN ETG+PI E EP Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP 248 Score = 21.9 bits (45), Expect(2) = 2e-21 Identities = 7/9 (77%), Positives = 9/9 (100%) Frame = +1 Query: 517 GDRGRFVDE 543 GDRGRF+D+ Sbjct: 160 GDRGRFIDD 168
>PSBS_TOBAC (Q9SMB4) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 274 Score = 100 bits (250), Expect = 2e-21 Identities = 69/158 (43%), Positives = 81/158 (51%), Gaps = 2/158 (1%) Frame = +3 Query: 48 MAQSMLMSGVNGV--ASGRSLLQAARPSSASTPFXXXXXXXXXXXYYKHMPSLSVRTMAL 221 MAQ+ML++ V S SL++ +P S+ F + T+AL Sbjct: 1 MAQTMLLTANAKVDLRSKESLVERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTTVAL 60 Query: 222 FGKSXXXXXXXXXXXXXXXXXEDXXXXXXXXXXXXKENELFVGRVAMIGFAASILGEAIT 401 F KS ED K+NELFVGRVAMIGFAAS+LGEAIT Sbjct: 61 F-KSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAIT 119 Query: 402 GKGILSQLNLETGIPIYEAEPXXXXXXXXXXXGAIGAL 515 GKGIL+QLNLETGIPIYEAEP GAIGAL Sbjct: 120 GKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGAL 157 Score = 67.8 bits (164), Expect = 2e-11 Identities = 32/46 (69%), Positives = 37/46 (80%) Frame = +3 Query: 327 KENELFVGRVAMIGFAASILGEAITGKGILSQLNLETGIPIYEAEP 464 K NELFVGR+A +G A SI+GE ITGKG L+QLN ETG+PI E EP Sbjct: 201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP 246
>PSBS_LYCES (P54773) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 99.4 bits (246), Expect(2) = 4e-21 Identities = 68/159 (42%), Positives = 80/159 (50%), Gaps = 3/159 (1%) Frame = +3 Query: 48 MAQSMLMSGVNGV--ASGRSLLQAARPSSASTPFXXXXXXXXXXXYYKHMPS-LSVRTMA 218 MAQ+ML++ V S SL++ +P S+ F S + T+A Sbjct: 1 MAQTMLLTANAKVDLRSKESLVERLKPKPLSSLFLPSLPLRFSSSSTNASSSKFTSTTVA 60 Query: 219 LFGKSXXXXXXXXXXXXXXXXXEDXXXXXXXXXXXXKENELFVGRVAMIGFAASILGEAI 398 LF ED K+NELFVGRVAMIGFAAS+LGEAI Sbjct: 61 LFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAI 120 Query: 399 TGKGILSQLNLETGIPIYEAEPXXXXXXXXXXXGAIGAL 515 TGKGIL+QLNLETGIPIYEAEP GAIGAL Sbjct: 121 TGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGAL 159 Score = 67.8 bits (164), Expect = 2e-11 Identities = 32/46 (69%), Positives = 37/46 (80%) Frame = +3 Query: 327 KENELFVGRVAMIGFAASILGEAITGKGILSQLNLETGIPIYEAEP 464 K NELFVGR+A +G A SI+GE ITGKG L+QLN ETG+PI E EP Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP 248 Score = 21.2 bits (43), Expect(2) = 4e-21 Identities = 7/9 (77%), Positives = 9/9 (100%) Frame = +1 Query: 517 GDRGRFVDE 543 GDRG+FVD+ Sbjct: 160 GDRGKFVDD 168
>PSBS_SPIOL (Q02060) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 274 Score = 97.1 bits (240), Expect(2) = 4e-21 Identities = 52/77 (67%), Positives = 53/77 (68%) Frame = +3 Query: 285 EDXXXXXXXXXXXXKENELFVGRVAMIGFAASILGEAITGKGILSQLNLETGIPIYEAEP 464 ED KENELFVGRVAMIGFAAS+LGE ITGKGILSQLNLETGIPIYEAEP Sbjct: 82 EDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEP 141 Query: 465 XXXXXXXXXXXGAIGAL 515 GAIGAL Sbjct: 142 LLLFFILFTLLGAIGAL 158 Score = 70.5 bits (171), Expect = 3e-12 Identities = 32/46 (69%), Positives = 39/46 (84%) Frame = +3 Query: 327 KENELFVGRVAMIGFAASILGEAITGKGILSQLNLETGIPIYEAEP 464 K NELFVGR+A +GFA S++GE ITGKG L+QLN+ETG+PI E EP Sbjct: 200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEP 245 Score = 23.5 bits (49), Expect(2) = 4e-21 Identities = 9/9 (100%), Positives = 9/9 (100%) Frame = +1 Query: 517 GDRGRFVDE 543 GDRGRFVDE Sbjct: 159 GDRGRFVDE 167
>PSBS_ARATH (Q9XF91) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 265 Score = 94.4 bits (233), Expect(2) = 3e-20 Identities = 50/77 (64%), Positives = 53/77 (68%) Frame = +3 Query: 285 EDXXXXXXXXXXXXKENELFVGRVAMIGFAASILGEAITGKGILSQLNLETGIPIYEAEP 464 ED K NELFVGRVAMIGFAAS+LGEA+TGKGIL+QLNLETGIPIYEAEP Sbjct: 73 EDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEP 132 Query: 465 XXXXXXXXXXXGAIGAL 515 GAIGAL Sbjct: 133 LLLFFILFTLLGAIGAL 149 Score = 67.4 bits (163), Expect = 3e-11 Identities = 31/46 (67%), Positives = 38/46 (82%) Frame = +3 Query: 327 KENELFVGRVAMIGFAASILGEAITGKGILSQLNLETGIPIYEAEP 464 K NELFVGR+A +G A S++GE ITGKG L+QLN+ETGIPI + EP Sbjct: 191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEP 236 Score = 23.5 bits (49), Expect(2) = 3e-20 Identities = 8/11 (72%), Positives = 10/11 (90%) Frame = +1 Query: 517 GDRGRFVDEQP 549 GDRG+FVD+ P Sbjct: 150 GDRGKFVDDPP 160
>ELI9_HORVU (P14897) Low molecular mass early light-inducible protein HV90,| chloroplast precursor (ELIP) Length = 172 Score = 33.9 bits (76), Expect = 0.31 Identities = 16/31 (51%), Positives = 21/31 (67%) Frame = +3 Query: 348 GRVAMIGFAASILGEAITGKGILSQLNLETG 440 GR+AM+GF ++ EA G G+LSQL TG Sbjct: 76 GRLAMVGFVTALAVEAGRGDGLLSQLGSGTG 106
>ELI6_HORVU (P14896) Low molecular mass early light-inducible protein HV60,| chloroplast precursor (ELIP) Length = 167 Score = 33.9 bits (76), Expect = 0.31 Identities = 16/31 (51%), Positives = 21/31 (67%) Frame = +3 Query: 348 GRVAMIGFAASILGEAITGKGILSQLNLETG 440 GR+AM+GF ++ EA G G+LSQL TG Sbjct: 71 GRLAMVGFVTALAVEAGRGDGLLSQLGSGTG 101
>YCF17_CYAPA (P48367) Hypothetical 5.5 kDa protein ycf17| Length = 49 Score = 33.1 bits (74), Expect = 0.54 Identities = 14/28 (50%), Positives = 22/28 (78%) Frame = +3 Query: 348 GRVAMIGFAASILGEAITGKGILSQLNL 431 GR+AM+GF A++L E++TG+G L L + Sbjct: 21 GRLAMLGFIAALLTESLTGQGTLHFLGI 48
>YCF17_PORPU (P51355) Hypothetical 5.5 kDa protein ycf17 (ORF48)| Length = 48 Score = 32.7 bits (73), Expect = 0.70 Identities = 16/27 (59%), Positives = 19/27 (70%) Frame = +3 Query: 336 ELFVGRVAMIGFAASILGEAITGKGIL 416 E + GR AMIGF A I E +TGKG+L Sbjct: 15 ETWNGRFAMIGFMAVIFIELVTGKGLL 41
>CBR_DUNBA (P27516) Carotene biosynthesis-related protein CBR, chloroplast| precursor Length = 172 Score = 32.7 bits (73), Expect = 0.70 Identities = 14/30 (46%), Positives = 22/30 (73%) Frame = +3 Query: 336 ELFVGRVAMIGFAASILGEAITGKGILSQL 425 E+ GR+AM+GF A++ E TG+ +L+QL Sbjct: 78 EIINGRLAMLGFVAALGAELSTGESVLTQL 107
>HEMH_ANASP (Q8YQR8) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 388 Score = 32.3 bits (72), Expect = 0.92 Identities = 15/32 (46%), Positives = 24/32 (75%) Frame = +3 Query: 336 ELFVGRVAMIGFAASILGEAITGKGILSQLNL 431 E++ GR+AM+GF A I+ E +TG+G+L + L Sbjct: 356 EVWNGRIAMLGFIALII-ELVTGQGLLHMIGL 386
>EFS_HUMAN (O43281) Embryonal Fyn-associated substrate (HEFS)| Length = 561 Score = 32.3 bits (72), Expect = 0.92 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = -2 Query: 424 SWDRIPLPVMASPKIDAAKPIMATRPTKSSFSLVKPIPPDVPKMP 290 S R PLP + P+ + P+ + P + +P+PP P++P Sbjct: 301 SLSRRPLPALPVPEAPSPSPVPSPAPGRKGSIQDRPLPPPPPRLP 345
>ELI5_HORVU (P14895) High molecular mass early light-inducible protein HV58,| chloroplast precursor (ELIP) Length = 231 Score = 31.2 bits (69), Expect = 2.0 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = +3 Query: 348 GRVAMIGFAASILGEAITGKGILSQLNL 431 GR+AM+GF A++ EA G G+L Q+ + Sbjct: 134 GRLAMVGFVAALSVEAARGGGLLDQVGM 161
>MAP4_MOUSE (P27546) Microtubule-associated protein 4 (MAP 4)| Length = 1125 Score = 30.8 bits (68), Expect = 2.7 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -2 Query: 373 AKPIMATRPTKSSFSLVKPIPPDVPKMPS 287 AKP+ T+P K+S S K P +PK P+ Sbjct: 672 AKPLATTQPAKTSTSKAKTQPTSLPKQPA 700
>HEMH_SYNP6 (Q5N2B2) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 387 Score = 30.4 bits (67), Expect = 3.5 Identities = 16/32 (50%), Positives = 23/32 (71%) Frame = +3 Query: 336 ELFVGRVAMIGFAASILGEAITGKGILSQLNL 431 E++ GR+AM+GF A +L E +TG+G L L L Sbjct: 356 EVWNGRIAMLGFLA-LLVELLTGRGPLHALGL 386
>POL_HV2ST (P20876) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1462 Score = 30.0 bits (66), Expect = 4.5 Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 2/76 (2%) Frame = +2 Query: 197 PLRPDHGPVRQVQDQGRAGQ--EGRCAQAQDGGRHLRHVRRDRFHQGERALRRPCCHDWL 370 P RP GP R+V + E Q D G RD + +R L P W Sbjct: 459 PDRPSRGPTREVHAAREKAERAEREAIQRSDRGLPAARETRDTMQRDDRGLAAPQFSLWK 518 Query: 371 RRVDLGRGHHRQGYPV 418 R V H +G PV Sbjct: 519 RPVVTA---HVEGQPV 531
>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCI type III CAB-4) (LHCP) Length = 251 Score = 30.0 bits (66), Expect = 4.5 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +3 Query: 327 KENELFVGRVAMIGFAASILGEAITGKGILSQL 425 KE EL GR+AM+ F ++ +TGKG L Sbjct: 202 KEKELANGRLAMLAFLGFVVQHNVTGKGPFENL 234
>HEMH_PROMM (Q7V6C6) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 391 Score = 29.6 bits (65), Expect = 5.9 Identities = 16/33 (48%), Positives = 23/33 (69%) Frame = +3 Query: 333 NELFVGRVAMIGFAASILGEAITGKGILSQLNL 431 +E + GR+AM+GFAA +L E I+G G L + L Sbjct: 359 SEAWNGRIAMLGFAAFLL-ELISGHGPLHAIGL 390
>POL_HV2D1 (P17757) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1461 Score = 29.6 bits (65), Expect = 5.9 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Frame = +2 Query: 197 PLRPDHGPVRQVQDQGRAGQ--EGRCAQAQDGGRHLRHVRRDRFHQGERALRRPCCHDWL 370 P R GPV ++ + EG Q DGG RD +G+R L P W Sbjct: 458 PNRSSSGPVGEIYAAREKAERAEGETIQGGDGGLTAPRAGRDAPQRGDRGLATPQFSLWK 517 Query: 371 RRV 379 R V Sbjct: 518 RPV 520
>MGAT3_HUMAN (Q09327) Beta-1,4-mannosyl-glycoprotein| 4-beta-N-acetylglucosaminyltransferase (EC 2.4.1.144) (N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase III) (N-acetylglucosaminyltransferase III) (GNT-III) (GlcNAc-T III) Length = 533 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = -2 Query: 436 VSRFSWDRIPLPVMASPKIDAAKPIMATRPTKSSFSLVKPIPP 308 VS F W+ P+ ASP + P + P S L++P+PP Sbjct: 46 VSSFFWNNAPVTPQASP--EPGGPDLLRTPLYSHSPLLQPLPP 86
>MURG_PROMA (Q7VDZ2) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 357 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = -2 Query: 406 LPVMASPKIDAAKPIMATRPTKSSFSLVKPIPPDVPK 296 LP+ A+ K+ + I+ P + SFSL P+P VPK Sbjct: 141 LPI-AAEKLKRCRTIVTGMPVRKSFSLKNPLPIWVPK 176
>MAP4_HUMAN (P27816) Microtubule-associated protein 4 (MAP 4)| Length = 1152 Score = 29.3 bits (64), Expect = 7.8 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -2 Query: 370 KPIMATRPTKSSFSLVKPIPPDVPKMPS 287 KP+ T+P K+S S K P +PK P+ Sbjct: 702 KPLATTQPAKTSTSKAKTQPTSLPKQPA 729
>POL_HV2BE (P18096) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin) (PR); Reverse trans Length = 1549 Score = 29.3 bits (64), Expect = 7.8 Identities = 16/43 (37%), Positives = 18/43 (41%) Frame = +2 Query: 251 GQEGRCAQAQDGGRHLRHVRRDRFHQGERALRRPCCHDWLRRV 379 G EG Q DGG RD +G+R L P W R V Sbjct: 479 GAEGETIQRGDGGLAAPRAERDTSQRGDRGLAAPQFSLWKRPV 521
>HEMH_SYNPX (Q7U5G0) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 391 Score = 29.3 bits (64), Expect = 7.8 Identities = 16/33 (48%), Positives = 24/33 (72%) Frame = +3 Query: 333 NELFVGRVAMIGFAASILGEAITGKGILSQLNL 431 +E++ GR+AM+GF+A +L E I+G G L L L Sbjct: 359 SEVWNGRLAMLGFSAFLL-ELISGHGPLHALGL 390 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,484,056 Number of Sequences: 219361 Number of extensions: 958029 Number of successful extensions: 3821 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3653 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3817 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4488201198 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
