ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63l14 |
|---|---|
| Clone Library Name | barley_pub |
>RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 32.3 bits (72), Expect = 1.1 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Frame = +2 Query: 329 SMPMPSILGQQPNMAHSGGKQQSHGPSLKQQQPFS-QGHFFISNAFAPPQGPPQHVNAGA 505 S +PS G++ G K+ ++GP PF+ G+F SNAF PP PP G Sbjct: 694 SAGIPSAGGEEHAFLTVGSKEANNGP------PFNFPGNFGGSNAFGPPIPPP-----GL 742 Query: 506 GAGLY 520 G G + Sbjct: 743 GGGAF 747
>RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 32.3 bits (72), Expect = 1.1 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Frame = +2 Query: 329 SMPMPSILGQQPNMAHSGGKQQSHGPSLKQQQPFS-QGHFFISNAFAPPQGPPQHVNAGA 505 S +PS G++ G K+ ++GP PF+ G+F SNAF PP PP G Sbjct: 694 SAGIPSAGGEEHAFLTVGSKEANNGP------PFNFPGNFGGSNAFGPPIPPP-----GL 742 Query: 506 GAGLY 520 G G + Sbjct: 743 GGGAF 747
>GLT3_WHEAT (P08488) Glutenin, high molecular weight subunit 12 precursor| Length = 660 Score = 32.3 bits (72), Expect = 1.1 Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Frame = +2 Query: 320 HYSSMPMPSILGQQPNM-AHSGGKQQSHGP-SLKQQQPFSQGHFFISNAFAPPQGPPQHV 493 +Y + P GQQP SG QQ H P SL+Q QGH+ S P QG H Sbjct: 249 YYPTSPQQLGQGQQPGQWQQSGQGQQGHYPTSLQQPGQGQQGHYLASQQ-QPAQGQQGHY 307 Query: 494 NA 499 A Sbjct: 308 PA 309
>BCL9_PIG (Q95KQ6) B-cell lymphoma 9 protein (Bcl-9) (Fragment)| Length = 130 Score = 32.0 bits (71), Expect = 1.4 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Frame = +2 Query: 320 HYSSMPMPSILGQQ--PNMAHSGGKQQSHGPSL---KQQQPF-SQGHFFISNAFAPPQGP 481 H + MP P+ +G P+ G SH P + Q+ P QG F P Q P Sbjct: 10 HSNQMPSPNAMGPNIPPHGVPMGPGLMSHNPIMGHGSQEPPMVPQGRMGFPQGFPPVQSP 69 Query: 482 PQHV 493 PQ V Sbjct: 70 PQQV 73
>BCL9_MOUSE (Q9D219) B-cell lymphoma 9 protein (Bcl-9)| Length = 1425 Score = 32.0 bits (71), Expect = 1.4 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Frame = +2 Query: 320 HYSSMPMPSILGQQ--PNMAHSGGKQQSHGPSL---KQQQPF-SQGHFFISNAFAPPQGP 481 H + MP P+ +G P+ G SH P + Q+ P QG F P Q P Sbjct: 1087 HSNQMPSPNAMGPSIPPHGVPMGPGLMSHNPIMGHGSQEPPMVPQGRMGFPQGFPPVQSP 1146 Query: 482 PQHV 493 PQ V Sbjct: 1147 PQQV 1150
>PNS1_NEUCR (Q870V7) Protein PNS1| Length = 554 Score = 32.0 bits (71), Expect = 1.4 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Frame = +2 Query: 323 YSSMPMPSI--LGQQPNMAHSGGKQQSHGPSLKQQQPFSQGHFFISNAFAPPQGPP 484 Y PMP+ GQQP + GG P G+ + +APPQGPP Sbjct: 28 YQMNPMPTDGNYGQQPQYGYGGGPP-----------PQQYGNGYGDGGYAPPQGPP 72
>GLT0_WHEAT (P10387) Glutenin, high molecular weight subunit DY10 precursor| Length = 648 Score = 32.0 bits (71), Expect = 1.4 Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Frame = +2 Query: 320 HYSSMPMPSILGQQPNM-AHSGGKQQSHGP-SLKQQQPFSQGHFFISNAFAPPQGPPQHV 493 +Y + P GQQP SG QQ H P SL+Q QGH+ S P QG H Sbjct: 237 YYPTSPQQLGQGQQPRQWQQSGQGQQGHYPTSLQQPGQGQQGHYLASQQ-QPGQGQQGHY 295 Query: 494 NA 499 A Sbjct: 296 PA 297
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 31.6 bits (70), Expect = 1.8 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = +2 Query: 41 STPNHQSQSMSSSKIGHSLTNLSTGGGGDLSRSSNAPVASGSPSNS 178 S+ + S S S S G S + S G SRSS++ +SGSPS S Sbjct: 59 SSSSSSSGSSSGSSSGSSSSASSRSGSSSSSRSSSSSSSSGSPSPS 104
>BCL9_HUMAN (O00512) B-cell lymphoma 9 protein (Bcl-9) (Legless homolog)| Length = 1426 Score = 31.6 bits (70), Expect = 1.8 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Frame = +2 Query: 320 HYSSMPMPSILGQQ--PNMAHSGGKQQSHGPSL---KQQQPF-SQGHFFISNAFAPPQGP 481 H + MP P+ +G P+ G SH P + Q+ P QG F P Q P Sbjct: 1088 HSNQMPSPNAVGPNIPPHGVPMGPGLMSHNPIMGHGSQEPPMVPQGRMGFPQGFPPVQSP 1147 Query: 482 PQHV 493 PQ V Sbjct: 1148 PQQV 1151
>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor| Length = 725 Score = 31.2 bits (69), Expect = 2.4 Identities = 21/119 (17%), Positives = 37/119 (31%) Frame = +2 Query: 41 STPNHQSQSMSSSKIGHSLTNLSTGGGGDLSRSSNAPVASGSPSNSVXXXXXXXXXXXXX 220 ++P+ S S SS+ S T+ S+ S++ + S S+S Sbjct: 198 TSPSSTSTSSSSTSTSSSSTSTSSSSTSTSPSSTSTSSSLTSTSSSSTSTSQSSTSTSSS 257 Query: 221 XXXXQPVVQLSSPQQHAXXXXXXXXXXXXXXXXHYSSMPMPSILGQQPNMAHSGGKQQS 397 P +S + YS+ PS+ P +A + S Sbjct: 258 STSTSPSSTSTSSSSTSTSPSSKSTSASSTSTSSYSTSTSPSLTSSSPTLASTSPSSTS 316
>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) Length = 4903 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = +2 Query: 44 TPNHQSQSMSSSKIGHSLTNLSTGGG-GDLSRSSNAPVAS 160 TP S+S +S++ H L + G G+ S SSN PV+S Sbjct: 2298 TPRPHSESFGTSQVVHDLVDRPVPGSEGNFSTSSNLPVSS 2337
>GLTC_WHEAT (P16315) Glutenin, low molecular weight subunit PTDUCD1 precursor| Length = 295 Score = 30.4 bits (67), Expect = 4.0 Identities = 22/55 (40%), Positives = 24/55 (43%) Frame = +2 Query: 329 SMPMPSILGQQPNMAHSGGKQQSHGPSLKQQQPFSQGHFFISNAFAPPQGPPQHV 493 S PS L QQP + QQ P L QQ PFSQ + PPQ Q V Sbjct: 60 SQQQPSFLQQQPILPQLPFSQQQQ-PVLPQQSPFSQQQLVL-----PPQQQYQQV 108
>AGO2_DROME (Q9VUQ5) Argonaute 2 protein| Length = 1214 Score = 30.4 bits (67), Expect = 4.0 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +2 Query: 353 GQQPNMAHSGGKQQSHGPSLKQQ 421 GQQPN S G+ QS GP +QQ Sbjct: 369 GQQPNQTQSQGQYQSRGPPQQQQ 391
>TM55A_HUMAN (Q8N4L2) Transmembrane protein 55A (EC 3.1.3.-) (Type II| phosphatidylinositol 4,5-bisphosphate 4-phosphatase) (PtdIns-4,5-P2 4-Ptase II) Length = 257 Score = 30.0 bits (66), Expect = 5.3 Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 9/132 (6%) Frame = +3 Query: 222 RRVASQLSNCHRLNNMQPRTLLRLLDPSQP-----PQITTAVCLCHLSLVSSQTWLTLAV 386 RR+ NC R+ N+ P L+ P+QP P+ T VC H ++ W+ L Sbjct: 112 RRIGCPRPNCRRIINLGPVMLISEEQPAQPALPIQPEGTRVVC-GHCG--NTFLWMELRF 168 Query: 387 SSSRMDPH*SNSSHSRKATSSSPMRSHHHKVRLSM*ML----ELVLASTKSARLTRRSSS 554 ++ PH S S+ P R + + M + L + + AR R + Sbjct: 169 NTLAKCPHCKKIS---SVGSALPRRRCCAYITIGMICIFIGVGLTVGTPDFARRFRATYV 225 Query: 555 NSRMLYLVRLLC 590 + + YL+ L+C Sbjct: 226 SWAIAYLLGLIC 237
>KR104_HUMAN (P60372) Keratin-associated protein 10-4 (Keratin-associated| protein 10.4) (High sulfur keratin-associated protein 10.4) (Keratin-associated protein 18-4) (Keratin-associated protein 18.4) Length = 401 Score = 30.0 bits (66), Expect = 5.3 Identities = 10/31 (32%), Positives = 18/31 (58%) Frame = -1 Query: 474 CGGANALEMKKWPCENGCCCFNEGPCDCCLP 382 C GA++L ++ C+ CC ++ CC+P Sbjct: 290 CSGASSLCCQQSSCQPACCTSSQSQQGCCVP 320
>STC_DROME (P40798) Protein shuttle craft| Length = 1106 Score = 29.6 bits (65), Expect = 6.9 Identities = 18/43 (41%), Positives = 25/43 (58%) Frame = +2 Query: 47 PNHQSQSMSSSKIGHSLTNLSTGGGGDLSRSSNAPVASGSPSN 175 P++ + +M +G S TN S GGGG + N PVAS S S+ Sbjct: 65 PSNATSTMQHP-VGSSYTNFSLGGGGG-AFGLNPPVASASTSH 105
>GLU2B_MOUSE (O08795) Glucosidase 2 beta subunit precursor (Glucosidase II beta| subunit) (Protein kinase C substrate, 60.1 kDa protein, heavy chain) (PKCSH) (80K-H protein) Length = 521 Score = 29.6 bits (65), Expect = 6.9 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = -1 Query: 201 LPPVLLETELDGEPEATGAFEDRDRSPPPPVERLVRECPIFDELM 67 LPP E E + EPE E+ + PPP++ P DE M Sbjct: 305 LPPTEEEEEEEEEPEEEEEEEEEEEEAPPPLQPPQPPSPTEDEKM 349
>VIT_ACITR (Q90243) Vitellogenin precursor (VTG) [Contains: Lipovitellin I| (LVI); Phosvitin (PV); Lipovitellin II (LVII)] (Fragment) Length = 1677 Score = 29.6 bits (65), Expect = 6.9 Identities = 21/58 (36%), Positives = 29/58 (50%) Frame = +3 Query: 387 SSSRMDPH*SNSSHSRKATSSSPMRSHHHKVRLSM*MLELVLASTKSARLTRRSSSNS 560 SSS SNSS S ++SSS RSH+H+ L+ +K + SSS+S Sbjct: 1172 SSSSSSSSGSNSSSSSSSSSSSSSRSHNHRNNTR------TLSKSKRYQNNNNSSSSS 1223
>HGS_MOUSE (Q99LI8) Hepatocyte growth factor-regulated tyrosine kinase| substrate Length = 775 Score = 29.3 bits (64), Expect = 9.0 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Frame = +2 Query: 341 PSILGQQP-NMAHSGGKQQSHGPSLKQQQPFSQGHFFISNAFAPPQGPPQ 487 P +G QP NM + SL QQP+ G + AP GPPQ Sbjct: 699 PMSMGYQPYNMQNLMTALPGQDASLPAQQPYIPGQQPLYQQMAPSTGPPQ 748
>SON_HUMAN (P18583) SON protein (SON3) (Negative regulatory element-binding| protein) (NRE-binding protein) (DBP-5) (Bax antagonist selected in saccharomyces 1) (BASS1) Length = 2426 Score = 29.3 bits (64), Expect = 9.0 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -1 Query: 219 LPDAGGLPPVLLETELDGEPEATGAFE 139 +P+ GLP EL G+P ATGA E Sbjct: 569 VPELPGLPSATRALELSGQPVATGALE 595
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 29.3 bits (64), Expect = 9.0 Identities = 26/95 (27%), Positives = 33/95 (34%), Gaps = 10/95 (10%) Frame = +2 Query: 233 QPVVQLSSPQQHAXXXXXXXXXXXXXXXXHYSSMPM-PSILGQQPNMAHSGGKQQSHGPS 409 Q + Q S QQH H S + QQ + QQ HGP Sbjct: 3909 QQIQQHQSQQQHQVQQQNQAQQQHLSQQQHQSQQQLNQQHQAQQQQLQQIQKLQQMHGPQ 3968 Query: 410 LKQQQPFSQGH------FFIS---NAFAPPQGPPQ 487 +Q+ P GH F S N+ P +G PQ Sbjct: 3969 QQQKSPQGVGHLGGSTSIFASQQHNSQLPARGVPQ 4003
>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing| mediator of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) (CTG repeat p Length = 2517 Score = 29.3 bits (64), Expect = 9.0 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = -1 Query: 231 PPFALPDAGGLPPVLLETELDGEPEATGAFEDRDRSPPPPVERL 100 PP A P PPV+ + E + E A E+ + PP E L Sbjct: 808 PPPAPPSPSAPPPVVPKEEKEEETAAAPPVEEGEEQKPPAAEEL 851 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,483,599 Number of Sequences: 219361 Number of extensions: 1814701 Number of successful extensions: 6519 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5909 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6495 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
