Clone Name | bah63l06 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_464895.1| Oryza sativa (japonica cultivar-group), mRNA Length = 393 Score = 246 bits (124), Expect = 7e-62 Identities = 217/248 (87%) Strand = Plus / Plus Query: 201 gaggaagtcaacaatatgggagtcaacatggcactatcgatgctaaaattctacaaaaga 260 ||||||||||| | ||||||||||| |||||||||| ||||||||||| ||||||||| Sbjct: 136 gaggaagtcaatgacttgggagtcaacgtggcactatccatgctaaaattttacaaaaga 195 Query: 261 gagatatcacccttactgccttcaagctgtcgttatgtgccaacgtgcagcgattactct 320 || |||||||||||||| || |||||||| |||||||||||||| ||||| || |||||| Sbjct: 196 gaaatatcacccttactaccctcaagctgccgttatgtgccaacttgcagtgagtactct 255 Query: 321 atgcaggcgtacaaaagatatggtgtcgcgaaaggtacaatcttgacagcatggcgtctg 380 ||||| || ||||||| ||| ||||| || || ||||||||||||||||| |||||||| Sbjct: 256 atgcaagcatacaaaaaatacggtgttgcaaagggtacaatcttgacagcttggcgtcta 315 Query: 381 tgccgttgtaatcctcttggtggacagggatatgatcctccaaggtggtttagggaggaa 440 ||||| ||||||||||||||||| || ||||||||||| |||||||||||| |||||| Sbjct: 316 tgccgctgtaatcctcttggtggtcatggatatgatcccccaaggtggtttgatgaggaa 375 Query: 441 gagttacc 448 ||| |||| Sbjct: 376 gagctacc 383
>dbj|AK102439.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093K10, full insert sequence Length = 3653 Score = 242 bits (122), Expect = 1e-60 Identities = 263/310 (84%) Strand = Plus / Plus Query: 153 aagagaaggattccgatggtgcgggtctgctgtactgccgacgacgatgaggaagtcaac 212 ||||||||||| || | | ||||||||| ||| |||| || || || ||||||||||| Sbjct: 160 aagagaaggatcccaacgatgcgggtctactgcgctgctgatgaagaagaggaagtcaat 219 Query: 213 aatatgggagtcaacatggcactatcgatgctaaaattctacaaaagagagatatcaccc 272 | |||||||||| |||||||||| ||||||||||| ||||||||||| ||||| ||| Sbjct: 220 gacttgggagtcaatgtggcactatccatgctaaaattttacaaaagagaaatatcgccc 279 Query: 273 ttactgccttcaagctgtcgttatgtgccaacgtgcagcgattactctatgcaggcgtac 332 ||||| || |||||||| |||||||||||||| |||||| | ||||||||||| || ||| Sbjct: 280 ttactaccctcaagctgccgttatgtgccaacttgcagccagtactctatgcaagcatac 339 Query: 333 aaaagatatggtgtcgcgaaaggtacaatcttgacagcatggcgtctgtgccgttgtaat 392 |||| ||| || || || || ||||||||||||||||| |||||||| |||| ||||||| Sbjct: 340 aaaaaatacggcgttgcaaagggtacaatcttgacagcttggcgtctatgccattgtaat 399 Query: 393 cctcttggtggacagggatatgatcctccaaggtggtttagggaggaagagttacctgag 452 ||||||||||| || || |||||||| |||||||||||| | |||||||||||||| || Sbjct: 400 cctcttggtggtcatggttatgatcccccaaggtggtttggtgaggaagagttaccaaag 459 Query: 453 gaatgatggc 462 ||||||||| Sbjct: 460 caatgatggc 469
>dbj|AK120985.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042E02, full insert sequence Length = 4316 Score = 234 bits (118), Expect = 3e-58 Identities = 262/310 (84%) Strand = Plus / Plus Query: 153 aagagaaggattccgatggtgcgggtctgctgtactgccgacgacgatgaggaagtcaac 212 ||||||||||| || | | ||||||||| ||| |||| || || || ||||||||||| Sbjct: 117 aagagaaggatcccaacgatgcgggtctactgcgctgctgatgaagaagaggaagtcaat 176 Query: 213 aatatgggagtcaacatggcactatcgatgctaaaattctacaaaagagagatatcaccc 272 | |||||||||| |||||||||| ||||||||||| ||||||||||| ||||| ||| Sbjct: 177 gacttgggagtcaatgtggcactatccatgctaaaattttacaaaagagaaatatcgccc 236 Query: 273 ttactgccttcaagctgtcgttatgtgccaacgtgcagcgattactctatgcaggcgtac 332 ||||| || |||||||| |||||||||||||| |||||| ||||||||||| || ||| Sbjct: 237 ttactaccctcaagctgccgttatgtgccaacttgcagcctgtactctatgcaagcatac 296 Query: 333 aaaagatatggtgtcgcgaaaggtacaatcttgacagcatggcgtctgtgccgttgtaat 392 |||| ||| || || || || ||||||||||||||||| |||||||| |||| ||||||| Sbjct: 297 aaaaaatacggcgttgcaaagggtacaatcttgacagcttggcgtctatgccattgtaat 356 Query: 393 cctcttggtggacagggatatgatcctccaaggtggtttagggaggaagagttacctgag 452 ||||||||||| || || |||||||| |||||||||||| | |||||||||||||| || Sbjct: 357 cctcttggtggtcatggttatgatcccccaaggtggtttggtgaggaagagttaccaaag 416 Query: 453 gaatgatggc 462 ||||||||| Sbjct: 417 caatgatggc 426
>gb|AY104281.1| Zea mays PCO091532 mRNA sequence Length = 659 Score = 202 bits (102), Expect = 1e-48 Identities = 207/242 (85%) Strand = Plus / Plus Query: 201 gaggaagtcaacaatatgggagtcaacatggcactatcgatgctaaaattctacaaaaga 260 ||||||||||| || | |||||||| ||||||||||| ||||||||||| |||||| || Sbjct: 202 gaggaagtcaaagattttggagtcaatatggcactatccatgctaaaattttacaaacga 261 Query: 261 gagatatcacccttactgccttcaagctgtcgttatgtgccaacgtgcagcgattactct 320 || |||||||| ||||| ||||||||||| || ||||| ||||| ||||| || |||||| Sbjct: 262 gaaatatcacctttactaccttcaagctgccgatatgtaccaacttgcagtgagtactct 321 Query: 321 atgcaggcgtacaaaagatatggtgtcgcgaaaggtacaatcttgacagcatggcgtctg 380 ||||||||||||||| |||||||||| | || ||| | |||||||| || ||||| || Sbjct: 322 atgcaggcgtacaaacgatatggtgttgtaaagggttccatcttgactgcttggcgcctt 381 Query: 381 tgccgttgtaatcctcttggtggacagggatatgatcctccaaggtggtttagggaggaa 440 |||||||||||||||||||||||| | || ||||||||||||| |||||| | |||||| Sbjct: 382 tgccgttgtaatcctcttggtggatatgggtatgatcctccaaaatggtttggcgaggaa 441 Query: 441 ga 442 || Sbjct: 442 ga 443
>ref|XM_464894.1| Oryza sativa (japonica cultivar-group), mRNA Length = 784 Score = 186 bits (94), Expect = 6e-44 Identities = 166/190 (87%) Strand = Plus / Plus Query: 259 gagagatatcacccttactgccttcaagctgtcgttatgtgccaacgtgcagcgattact 318 |||| |||||||||||||| || |||||||| |||||||||||||| ||||| || |||| Sbjct: 232 gagaaatatcacccttactaccctcaagctgccgttatgtgccaacttgcagtgagtact 291 Query: 319 ctatgcaggcgtacaaaagatatggtgtcgcgaaaggtacaatcttgacagcatggcgtc 378 ||||||| || ||||||| ||| ||||| || || ||||||||||||||||| ||||||| Sbjct: 292 ctatgcaagcatacaaaaaatacggtgttgcaaagggtacaatcttgacagcttggcgtc 351 Query: 379 tgtgccgttgtaatcctcttggtggacagggatatgatcctccaaggtggtttagggagg 438 | ||||| ||||||||||||||||| || ||||||||||| |||||||||||| |||| Sbjct: 352 tatgccgctgtaatcctcttggtggtcatggatatgatcccccaaggtggtttgatgagg 411 Query: 439 aagagttacc 448 ||||| |||| Sbjct: 412 aagagctacc 421
>dbj|AK102256.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088I10, full insert sequence Length = 784 Score = 186 bits (94), Expect = 6e-44 Identities = 166/190 (87%) Strand = Plus / Plus Query: 259 gagagatatcacccttactgccttcaagctgtcgttatgtgccaacgtgcagcgattact 318 |||| |||||||||||||| || |||||||| |||||||||||||| ||||| || |||| Sbjct: 232 gagaaatatcacccttactaccctcaagctgccgttatgtgccaacttgcagtgagtact 291 Query: 319 ctatgcaggcgtacaaaagatatggtgtcgcgaaaggtacaatcttgacagcatggcgtc 378 ||||||| || ||||||| ||| ||||| || || ||||||||||||||||| ||||||| Sbjct: 292 ctatgcaagcatacaaaaaatacggtgttgcaaagggtacaatcttgacagcttggcgtc 351 Query: 379 tgtgccgttgtaatcctcttggtggacagggatatgatcctccaaggtggtttagggagg 438 | ||||| ||||||||||||||||| || ||||||||||| |||||||||||| |||| Sbjct: 352 tatgccgctgtaatcctcttggtggtcatggatatgatcccccaaggtggtttgatgagg 411 Query: 439 aagagttacc 448 ||||| |||| Sbjct: 412 aagagctacc 421
>dbj|AK070611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062P12, full insert sequence Length = 1644 Score = 182 bits (92), Expect = 9e-43 Identities = 176/204 (86%) Strand = Plus / Plus Query: 259 gagagatatcacccttactgccttcaagctgtcgttatgtgccaacgtgcagcgattact 318 |||| ||||| |||||||| || |||||||| |||||||||||||| |||||| | |||| Sbjct: 950 gagaaatatcgcccttactaccctcaagctgccgttatgtgccaacttgcagccagtact 1009 Query: 319 ctatgcaggcgtacaaaagatatggtgtcgcgaaaggtacaatcttgacagcatggcgtc 378 ||||||| || ||||||| ||| || || || || ||||||||||||||||| ||||||| Sbjct: 1010 ctatgcaagcatacaaaaaatacggcgttgcaaagggtacaatcttgacagcttggcgtc 1069 Query: 379 tgtgccgttgtaatcctcttggtggacagggatatgatcctccaaggtggtttagggagg 438 | |||| |||||||||||||||||| || || |||||||| |||||||||||| | |||| Sbjct: 1070 tatgccattgtaatcctcttggtggtcatggttatgatcccccaaggtggtttggtgagg 1129 Query: 439 aagagttacctgaggaatgatggc 462 |||||||||| || ||||||||| Sbjct: 1130 aagagttaccaaagcaatgatggc 1153 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 201 gaggaagtcaacaatatgggagtcaacatggcactatcgatgctaaaattctacaaaag 259 ||||||||||| | |||||||||| |||||||||| ||||||||||| |||||||| Sbjct: 776 gaggaagtcaatgacttgggagtcaatgtggcactatccatgctaaaattttacaaaag 834
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Minus Query: 259 gagagatatcacccttactgccttcaagctgtcgttatgtgccaacgtgcagcgattact 318 |||| |||||||||||||| || |||||||| |||||||||||||| ||||| || |||| Sbjct: 9053441 gagaaatatcacccttactaccctcaagctgccgttatgtgccaacttgcagtgagtact 9053382 Query: 319 ctatgcaggcgtacaaaagatatggtgtcgcgaaaggtacaatcttgacagcatggcgtc 378 ||||||| || ||||||| ||| ||||| || || ||||||||||||||||| ||||||| Sbjct: 9053381 ctatgcaagcatacaaaaaatacggtgttgcaaagggtacaatcttgacagcttggcgtc 9053322 Query: 379 tgtgccgttgtaatcctcttggt 401 | ||||| ||||||||||||||| Sbjct: 9053321 tatgccgctgtaatcctcttggt 9053299 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 217 tgggagtcaacatggcactatcgatgctaaaattctacaaaag 259 ||||||||||| |||||||||| ||||||||||| |||||||| Sbjct: 9053607 tgggagtcaacgtggcactatccatgctaaaattttacaaaag 9053565 Score = 44.1 bits (22), Expect = 0.55 Identities = 43/50 (86%) Strand = Plus / Minus Query: 399 ggtggacagggatatgatcctccaaggtggtttagggaggaagagttacc 448 ||||| || ||||||||||| |||||||||||| ||||||||| |||| Sbjct: 9053192 ggtggtcatggatatgatcccccaaggtggtttgatgaggaagagctacc 9053143
>dbj|AP006160.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1178F07 Length = 144454 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Minus Query: 259 gagagatatcacccttactgccttcaagctgtcgttatgtgccaacgtgcagcgattact 318 |||| |||||||||||||| || |||||||| |||||||||||||| ||||| || |||| Sbjct: 93887 gagaaatatcacccttactaccctcaagctgccgttatgtgccaacttgcagtgagtact 93828 Query: 319 ctatgcaggcgtacaaaagatatggtgtcgcgaaaggtacaatcttgacagcatggcgtc 378 ||||||| || ||||||| ||| ||||| || || ||||||||||||||||| ||||||| Sbjct: 93827 ctatgcaagcatacaaaaaatacggtgttgcaaagggtacaatcttgacagcttggcgtc 93768 Query: 379 tgtgccgttgtaatcctcttggt 401 | ||||| ||||||||||||||| Sbjct: 93767 tatgccgctgtaatcctcttggt 93745 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 217 tgggagtcaacatggcactatcgatgctaaaattctacaaaag 259 ||||||||||| |||||||||| ||||||||||| |||||||| Sbjct: 94053 tgggagtcaacgtggcactatccatgctaaaattttacaaaag 94011 Score = 44.1 bits (22), Expect = 0.55 Identities = 43/50 (86%) Strand = Plus / Minus Query: 399 ggtggacagggatatgatcctccaaggtggtttagggaggaagagttacc 448 ||||| || ||||||||||| |||||||||||| ||||||||| |||| Sbjct: 93638 ggtggtcatggatatgatcccccaaggtggtttgatgaggaagagctacc 93589
>dbj|AP005803.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0060K08 Length = 159626 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Minus Query: 259 gagagatatcacccttactgccttcaagctgtcgttatgtgccaacgtgcagcgattact 318 |||| |||||||||||||| || |||||||| |||||||||||||| ||||| || |||| Sbjct: 126050 gagaaatatcacccttactaccctcaagctgccgttatgtgccaacttgcagtgagtact 125991 Query: 319 ctatgcaggcgtacaaaagatatggtgtcgcgaaaggtacaatcttgacagcatggcgtc 378 ||||||| || ||||||| ||| ||||| || || ||||||||||||||||| ||||||| Sbjct: 125990 ctatgcaagcatacaaaaaatacggtgttgcaaagggtacaatcttgacagcttggcgtc 125931 Query: 379 tgtgccgttgtaatcctcttggt 401 | ||||| ||||||||||||||| Sbjct: 125930 tatgccgctgtaatcctcttggt 125908 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 201 gaggaagtcaacaatatgggagtcaacatggcactatcgatgctaaaattctacaaaag 259 ||||||||||| | ||||||||||| |||||||||| ||||||||||| |||||||| Sbjct: 126232 gaggaagtcaatgacttgggagtcaacgtggcactatccatgctaaaattttacaaaag 126174 Score = 44.1 bits (22), Expect = 0.55 Identities = 43/50 (86%) Strand = Plus / Minus Query: 399 ggtggacagggatatgatcctccaaggtggtttagggaggaagagttacc 448 ||||| || ||||||||||| |||||||||||| ||||||||| |||| Sbjct: 125801 ggtggtcatggatatgatcccccaaggtggtttgatgaggaagagctacc 125752
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 133 bits (67), Expect = 8e-28 Identities = 124/143 (86%) Strand = Plus / Minus Query: 259 gagagatatcacccttactgccttcaagctgtcgttatgtgccaacgtgcagcgattact 318 |||| ||||| |||||||| || |||||||| |||||||||||||| |||||| | |||| Sbjct: 76899 gagaaatatcgcccttactaccctcaagctgccgttatgtgccaacttgcagccagtact 76840 Query: 319 ctatgcaggcgtacaaaagatatggtgtcgcgaaaggtacaatcttgacagcatggcgtc 378 ||||||| || ||||||| ||| || || || || ||||||||||||||||| ||||||| Sbjct: 76839 ctatgcaagcatacaaaaaatacggcgttgcaaagggtacaatcttgacagcttggcgtc 76780 Query: 379 tgtgccgttgtaatcctcttggt 401 | |||| |||||||||||||||| Sbjct: 76779 tatgccattgtaatcctcttggt 76757 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 411 tatgatcctccaaggtggtttagggaggaagagttacctgaggaatgatggc 462 |||||||| |||||||||||| | |||||||||||||| || ||||||||| Sbjct: 76643 tatgatcccccaaggtggtttggtgaggaagagttaccaaagcaatgatggc 76592 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 217 tgggagtcaacatggcactatcgatgctaaaattctacaaaag 259 |||||||||| |||||||||| ||||||||||| |||||||| Sbjct: 77057 tgggagtcaatgtggcactatccatgctaaaattttacaaaag 77015
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 8e-28 Identities = 124/143 (86%) Strand = Plus / Minus Query: 259 gagagatatcacccttactgccttcaagctgtcgttatgtgccaacgtgcagcgattact 318 |||| ||||| |||||||| || |||||||| |||||||||||||| |||||| | |||| Sbjct: 28272098 gagaaatatcgcccttactaccctcaagctgccgttatgtgccaacttgcagccagtact 28272039 Query: 319 ctatgcaggcgtacaaaagatatggtgtcgcgaaaggtacaatcttgacagcatggcgtc 378 ||||||| || ||||||| ||| || || || || ||||||||||||||||| ||||||| Sbjct: 28272038 ctatgcaagcatacaaaaaatacggcgttgcaaagggtacaatcttgacagcttggcgtc 28271979 Query: 379 tgtgccgttgtaatcctcttggt 401 | |||| |||||||||||||||| Sbjct: 28271978 tatgccattgtaatcctcttggt 28271956 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 411 tatgatcctccaaggtggtttagggaggaagagttacctgaggaatgatggc 462 |||||||| |||||||||||| | |||||||||||||| || ||||||||| Sbjct: 28271842 tatgatcccccaaggtggtttggtgaggaagagttaccaaagcaatgatggc 28271791 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 201 gaggaagtcaacaatatgggagtcaacatggcactatcgatgctaaaattctacaaaag 259 ||||||||||| | |||||||||| |||||||||| ||||||||||| |||||||| Sbjct: 28272272 gaggaagtcaatgacttgggagtcaatgtggcactatccatgctaaaattttacaaaag 28272214
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 8e-28 Identities = 124/143 (86%) Strand = Plus / Minus Query: 259 gagagatatcacccttactgccttcaagctgtcgttatgtgccaacgtgcagcgattact 318 |||| ||||| |||||||| || |||||||| |||||||||||||| |||||| | |||| Sbjct: 28256676 gagaaatatcgcccttactaccctcaagctgccgttatgtgccaacttgcagccagtact 28256617 Query: 319 ctatgcaggcgtacaaaagatatggtgtcgcgaaaggtacaatcttgacagcatggcgtc 378 ||||||| || ||||||| ||| || || || || ||||||||||||||||| ||||||| Sbjct: 28256616 ctatgcaagcatacaaaaaatacggcgttgcaaagggtacaatcttgacagcttggcgtc 28256557 Query: 379 tgtgccgttgtaatcctcttggt 401 | |||| |||||||||||||||| Sbjct: 28256556 tatgccattgtaatcctcttggt 28256534 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 411 tatgatcctccaaggtggtttagggaggaagagttacctgaggaatgatggc 462 |||||||| |||||||||||| | |||||||||||||| || ||||||||| Sbjct: 28256420 tatgatcccccaaggtggtttggtgaggaagagttaccaaagcaatgatggc 28256369 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 217 tgggagtcaacatggcactatcgatgctaaaattctacaaaag 259 |||||||||| |||||||||| ||||||||||| |||||||| Sbjct: 28256834 tgggagtcaatgtggcactatccatgctaaaattttacaaaag 28256792
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Plus Query: 64 ccaccgtcgccatggccgcccccgtctc 91 |||||||||||||||||||| ||||||| Sbjct: 1136612 ccaccgtcgccatggccgccgccgtctc 1136639 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gcgccaccgtcgccatggcc 80 |||||||||||||||||||| Sbjct: 8347286 gcgccaccgtcgccatggcc 8347267
>dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A04 Length = 141079 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Plus Query: 64 ccaccgtcgccatggccgcccccgtctc 91 |||||||||||||||||||| ||||||| Sbjct: 105926 ccaccgtcgccatggccgccgccgtctc 105953
>gb|AC116778.9| Mus musculus chromosome 1, clone RP24-481H3, complete sequence Length = 132180 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 429 tttagggaggaagagttacctgagga 454 |||||||||||| ||||||||||||| Sbjct: 98921 tttagggaggaaaagttacctgagga 98946
>gb|AC158940.8| Mus musculus chromosome 1, clone RP24-284D7, complete sequence Length = 163660 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 429 tttagggaggaagagttacctgagga 454 |||||||||||| ||||||||||||| Sbjct: 27420 tttagggaggaaaagttacctgagga 27445
>emb|AL445213.11| Human DNA sequence from clone RP13-52K8 on chromosome X Contains a pseudogene similar to part of SLC9A2 (solute carrier family 9 (sodium/hydrogen exchanger), isoform 2), complete sequence Length = 190604 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 268 cacccttactgccttcaagctg 289 |||||||||||||||||||||| Sbjct: 130311 cacccttactgccttcaagctg 130290
>ref|XM_369473.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG05991.4) partial mRNA Length = 3234 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 435 gaggaagagttacctgaggaa 455 ||||||||||||||||||||| Sbjct: 847 gaggaagagttacctgaggaa 867
>gb|AC137529.3| Carollia perspicillata clone 6M17, complete sequence Length = 118381 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 555 aagtgtattttattgactatg 575 ||||||||||||||||||||| Sbjct: 83440 aagtgtattttattgactatg 83460
>gb|AC133956.4| Mus musculus BAC clone RP23-347E10 from chromosome 16, complete sequence Length = 171261 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 69 gtcgccatggccgcccccgtctctg 93 ||||||||| ||||||||||||||| Sbjct: 116508 gtcgccatgcccgcccccgtctctg 116484
>gb|AC148317.3| Pan troglodytes BAC clone CH251-519K22 from chromosome 7, complete sequence Length = 154065 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 419 tccaaggtggtttagggagga 439 ||||||||||||||||||||| Sbjct: 79171 tccaaggtggtttagggagga 79191
>gb|AC159231.2| Mus musculus BAC clone RP24-387F20 from chromosome 13, complete sequence Length = 150809 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 548 caagggaaagtgtattttatt 568 ||||||||||||||||||||| Sbjct: 137267 caagggaaagtgtattttatt 137247
>emb|CT009604.11| Mouse DNA sequence from clone RP23-4J22 on chromosome 13, complete sequence Length = 209356 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 548 caagggaaagtgtattttatt 568 ||||||||||||||||||||| Sbjct: 94418 caagggaaagtgtattttatt 94438
>gb|AC148461.2| Xenopus tropicalis clone CH216-3P14, complete sequence Length = 177929 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 233 actatcgatgctaaaattctacaaaagag 261 ||||| ||| ||||||||||||||||||| Sbjct: 90449 actatagattctaaaattctacaaaagag 90421
>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold Length = 1501503 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 555 aagtgtattttattgactatg 575 ||||||||||||||||||||| Sbjct: 531092 aagtgtattttattgactatg 531112
>emb|AL807820.4| Mouse DNA sequence from clone RP23-418L18 on chromosome X, complete sequence Length = 150030 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 gtctctgcttccctcttgcct 107 ||||||||||||||||||||| Sbjct: 108693 gtctctgcttccctcttgcct 108673
>ref|NM_121489.1| Arabidopsis thaliana mannosyltransferase/ transferase, transferring glycosyl groups AT5G14850 transcript variant AT5G14850.1 mRNA, complete cds Length = 1862 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 ggcgccaccgtcgccatggccgcc 83 ||||||||||||||||| |||||| Sbjct: 64 ggcgccaccgtcgccatcgccgcc 41
>ref|NM_180491.1| Arabidopsis thaliana mannosyltransferase AT5G14850 transcript variant AT5G14850.2 mRNA, complete cds Length = 1861 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 ggcgccaccgtcgccatggccgcc 83 ||||||||||||||||| |||||| Sbjct: 64 ggcgccaccgtcgccatcgccgcc 41
>ref|NM_187868.1| Oryza sativa (japonica cultivar-group), Ozsa8312 predicted mRNA Length = 1713 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gcgccaccgtcgccatggcc 80 |||||||||||||||||||| Sbjct: 394 gcgccaccgtcgccatggcc 375
>gb|AC093363.12| Mus musculus chromosome 7, clone RP23-60O3, complete sequence Length = 254081 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 452 ggaatgatggctgatgttggaatg 475 ||||||||||||||||| |||||| Sbjct: 60419 ggaatgatggctgatgtaggaatg 60442
>ref|XM_456339.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0A00297g) partial mRNA Length = 1962 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 547 tcaagggaaagtgtattttattga 570 ||||||||| |||||||||||||| Sbjct: 1806 tcaagggaaggtgtattttattga 1829
>ref|XM_456964.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0A14982g) partial mRNA Length = 279 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 547 tcaagggaaagtgtattttattga 570 ||||||||| |||||||||||||| Sbjct: 123 tcaagggaatgtgtattttattga 146
>gb|AC145805.2| Xenopus tropicalis clone CH216-85O8, complete sequence Length = 166207 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 tactactgcttgtgctagtt 546 |||||||||||||||||||| Sbjct: 121991 tactactgcttgtgctagtt 121972
>gb|AF198031.1| Mus musculus enamel matrix serine proteinase 1 precursor (Prss17) gene, complete cds Length = 10134 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 acctgaggaatgatggctga 465 |||||||||||||||||||| Sbjct: 87 acctgaggaatgatggctga 106
>ref|XM_531695.2| PREDICTED: Canis familiaris similar to Y54G11A.7, transcript variant 1 (LOC474465), mRNA Length = 1470 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cgtcgccatggccgcccccg 87 |||||||||||||||||||| Sbjct: 54 cgtcgccatggccgcccccg 73
>ref|XM_851458.1| PREDICTED: Canis familiaris similar to Y54G11A.7, transcript variant 2 (LOC474465), mRNA Length = 1518 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 cgtcgccatggccgcccccg 87 |||||||||||||||||||| Sbjct: 54 cgtcgccatggccgcccccg 73
>gb|AC134858.6| Mus musculus BAC clone RP23-361A18 from chromosome 7, complete sequence Length = 214282 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 acctgaggaatgatggctga 465 |||||||||||||||||||| Sbjct: 68917 acctgaggaatgatggctga 68936
>emb|AL731559.8| Human DNA sequence from clone RP11-495F22 on chromosome 10 Contains part of the gene for CamKI-like protein kinase (CKLiK) (LOC221042 LOC283070), complete sequence Length = 196320 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 aaggtggtttagggaggaag 441 |||||||||||||||||||| Sbjct: 171940 aaggtggtttagggaggaag 171959
>emb|AL391260.13| Human DNA sequence from clone RP11-328B14 on chromosome 10, complete sequence Length = 172771 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 553 gaaagtgtattttattgact 572 |||||||||||||||||||| Sbjct: 48557 gaaagtgtattttattgact 48538
>emb|AL158050.8| Human DNA sequence from clone RP3-437C15 on chromosome 6 Contains a Wilms' tumour 1-associating protein (WTAP) (KIAA0105) pseudogene, complete sequence Length = 149679 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 ctcataaaggaggttactcc 522 |||||||||||||||||||| Sbjct: 126617 ctcataaaggaggttactcc 126598
>emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces hansenii Length = 1249565 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 547 tcaagggaaagtgtattttattga 570 ||||||||| |||||||||||||| Sbjct: 1232878 tcaagggaatgtgtattttattga 1232901 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 547 tcaagggaaagtgtattttattga 570 ||||||||| |||||||||||||| Sbjct: 9416 tcaagggaaggtgtattttattga 9393
>emb|AL391149.1|ATT9L3 Arabidopsis thaliana DNA chromosome 5, BAC clone T9L3 (ESSA project) Length = 89370 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 ggcgccaccgtcgccatggccgcc 83 ||||||||||||||||| |||||| Sbjct: 72046 ggcgccaccgtcgccatcgccgcc 72069
>emb|AL807395.8| Mouse DNA sequence from clone RP23-81P12 on chromosome 11 Contains the 5' end of the Tcn2 gene for transcobalamin 2, two novel genes, a glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene, the Pes1 gene for BRCT domain containing pescadillo homolog 1 (zebrafish), the Gcst gene for galactosylceramide sulfotransferase, a ubiquitin-conjugating enzyme E2L 3 (Ube2l3) pseuogene, the Sec14l4 and Sec14l2 genes for SEC14-like 4 (S. cerevisiae) and 2, the ortholog of human and rat SEC14-like 3 (S. cerevisiae) SEC14L3, a ribosomal protein L29 (Rpl29) pseudogene, a transformer 2 alpha homolog (Drosophila) (Tra2a) pseudogene and a CpG island, complete sequence Length = 201238 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 ccgcccccgtctctgcttcc 98 |||||||||||||||||||| Sbjct: 64942 ccgcccccgtctctgcttcc 64961
>emb|BX572635.17| Zebrafish DNA sequence from clone CH211-235O23 in linkage group 2, complete sequence Length = 124717 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 caacaatatgggagtcaacatggc 232 ||||||||||| |||||||||||| Sbjct: 113855 caacaatatggaagtcaacatggc 113832
>gb|AY120693.1| Arabidopsis thaliana AT5g14850/T9L3_150 mRNA, complete cds Length = 1647 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 ggcgccaccgtcgccatggccgcc 83 ||||||||||||||||| |||||| Sbjct: 51 ggcgccaccgtcgccatcgccgcc 28
>gb|AC106865.4| Homo sapiens BAC clone RP11-153M7 from 4, complete sequence Length = 152118 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 aagggaaagtgtattttatt 568 |||||||||||||||||||| Sbjct: 78708 aagggaaagtgtattttatt 78727
>gb|AC011390.3| Homo sapiens chromosome 5 clone CTB-176I15, complete sequence Length = 56173 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 ccttactgccttcaagctgt 290 |||||||||||||||||||| Sbjct: 11191 ccttactgccttcaagctgt 11210
>gb|AC018719.4| Homo sapiens BAC clone RP11-573N21 from Xq23, complete sequence Length = 168210 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 560 tattttattgactatgctgt 579 |||||||||||||||||||| Sbjct: 56215 tattttattgactatgctgt 56234
>gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold Length = 501879 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 554 aaagtgtattttattgactatgct 577 ||||| |||||||||||||||||| Sbjct: 151930 aaagtatattttattgactatgct 151907
>gb|AC016568.5| Homo sapiens chromosome 5 clone CTC-566C5, complete sequence Length = 220932 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 aggaagtcaacaatatgggagtca 225 |||||||||| ||||||||||||| Sbjct: 58311 aggaagtcaaaaatatgggagtca 58334
>gb|AY050456.1| Arabidopsis thaliana AT5g14850/T9L3_150 mRNA, complete cds Length = 1862 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 ggcgccaccgtcgccatggccgcc 83 ||||||||||||||||| |||||| Sbjct: 64 ggcgccaccgtcgccatcgccgcc 41
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 gcgccaccgtcgccatggcc 80 |||||||||||||||||||| Sbjct: 10266661 gcgccaccgtcgccatggcc 10266680
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 ccgtcgccatggccgcccccgtct 90 ||||||||||||||||| |||||| Sbjct: 13728193 ccgtcgccatggccgcctccgtct 13728170
>gb|AC091971.4| Homo sapiens chromosome 5 clone RP11-511F22, complete sequence Length = 70759 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 ccttactgccttcaagctgt 290 |||||||||||||||||||| Sbjct: 7491 ccttactgccttcaagctgt 7472
>dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0434D08 Length = 161266 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gcgccaccgtcgccatggcc 80 |||||||||||||||||||| Sbjct: 141217 gcgccaccgtcgccatggcc 141198
>dbj|AP000816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0503G09 Length = 59843 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gcgccaccgtcgccatggcc 80 |||||||||||||||||||| Sbjct: 11912 gcgccaccgtcgccatggcc 11893
>dbj|AP005498.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0406D01 Length = 163932 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 ccgtcgccatggccgcccccgtct 90 ||||||||||||||||| |||||| Sbjct: 42262 ccgtcgccatggccgcctccgtct 42239
>dbj|AP005554.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1118_A10 Length = 95161 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 gcgccaccgtcgccatggcc 80 |||||||||||||||||||| Sbjct: 67810 gcgccaccgtcgccatggcc 67829
>emb|AJ243213.1|HSA243213 Homo sapiens partial 5-HT4 receptor gene, exons 2 to 5 Length = 130985 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 ccttactgccttcaagctgt 290 |||||||||||||||||||| Sbjct: 38450 ccttactgccttcaagctgt 38431 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,723,785 Number of Sequences: 3902068 Number of extensions: 4723785 Number of successful extensions: 83065 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82649 Number of HSP's gapped (non-prelim): 414 length of query: 627 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 604 effective length of database: 17,143,297,704 effective search space: 10354551813216 effective search space used: 10354551813216 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)