Clone Name	bah63l05
Clone Library Name	barley_pub

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No.	Definition	Score (bits)	E Value
1	THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and expor...	99	1e-20
2	THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1...	98	2e-20
3	REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2	95	1e-19
4	MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)	58	2e-08
5	MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)	58	2e-08
6	MLO3_SCHPO (Q09330) Protein mlo3	58	2e-08
7	PDIP3_HUMAN (Q9BY77) Polymerase delta-interacting protein 3 (46 ...	58	2e-08
8	PDIP3_MOUSE (Q8BG81) Polymerase delta-interacting protein 3	57	5e-08
9	HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hn...	53	8e-07
10	GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein ...	53	8e-07
11	HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (...	53	8e-07
12	PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-bi...	53	8e-07
13	HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (...	52	1e-06
14	ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloro...	51	2e-06
15	PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bi...	50	4e-06
16	ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast prec...	50	5e-06
17	ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precur...	50	6e-06
18	ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precur...	49	8e-06
19	PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-bi...	49	8e-06
20	PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g...	49	1e-05
21	TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)	49	1e-05
22	TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)	49	1e-05
23	ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec...	47	3e-05
24	PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-bind...	47	5e-05
25	PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-bi...	47	5e-05
26	ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precur...	46	7e-05
27	MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote...	46	9e-05
28	MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing prote...	46	9e-05
29	PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-bi...	45	1e-04
30	PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-bi...	45	1e-04
31	PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-bi...	45	1e-04
32	PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic a...	45	2e-04
33	RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif pro...	45	2e-04
34	ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor	45	2e-04
35	PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-bi...	44	3e-04
36	PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-bindi...	44	3e-04
37	GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochon...	44	3e-04
38	PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi...	44	3e-04
39	RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-bindin...	44	4e-04
40	RSD1_SCHPO (O13845) RNA-binding protein rsd1	44	4e-04
41	SXL_MUSDO (O17310) Sex-lethal homolog	44	4e-04
42	TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10 (Tran...	44	5e-04
43	TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10 (Tr...	44	5e-04
44	TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10 (Tr...	44	5e-04
45	BOLL_MACFA (Q8WP23) Protein boule-like	44	5e-04
46	BOLL_HUMAN (Q8N9W6) Protein boule-like	44	5e-04
47	PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-...	44	5e-04
48	BOLL_MOUSE (Q924M5) Protein boule-like	43	6e-04
49	ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor	43	8e-04
50	RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif pro...	43	8e-04
51	RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif p...	43	8e-04
52	RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif p...	43	8e-04
53	IF34_CAEEL (Q19706) Probable eukaryotic translation initiation f...	42	0.001
54	RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif pro...	42	0.001
55	RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Co...	42	0.001
56	RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (He...	42	0.001
57	RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-bindin...	42	0.001
58	RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, fa...	42	0.001
59	RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)	42	0.001
60	NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2	42	0.002
61	PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-bi...	42	0.002
62	NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 k...	42	0.002
63	NUCL_RAT (P13383) Nucleolin (Protein C23)	41	0.002
64	PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-bi...	41	0.002
65	PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-bi...	41	0.002
66	PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-bi...	41	0.002
67	PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-bi...	41	0.002
68	PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-bi...	41	0.002
69	HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (h...	41	0.002
70	MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing prote...	41	0.002
71	NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 k...	41	0.003
72	NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 k...	41	0.003
73	NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2	41	0.003
74	MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing prote...	41	0.003
75	YBLC_SCHPO (Q9URV0) Hypothetical RNA-binding protein C106.12c in...	41	0.003
76	RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-bindin...	41	0.003
77	SXL_DROSU (Q24668) Protein sex-lethal	40	0.004
78	SXL_DROME (P19339) Protein sex-lethal	40	0.004
79	CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit...	40	0.004
80	CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit...	40	0.004
81	MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing prote...	40	0.004
82	GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 pro...	40	0.004
83	CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit...	40	0.005
84	CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit...	40	0.005
85	CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit...	40	0.005
86	YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 i...	40	0.005
87	MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing prote...	40	0.005
88	CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit...	40	0.005
89	SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized ...	40	0.005
90	IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 s...	40	0.005
91	IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 s...	40	0.005
92	NUCL_MOUSE (P09405) Nucleolin (Protein C23)	40	0.005
93	NUCL_HUMAN (P19338) Nucleolin (Protein C23)	40	0.007
94	MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing prote...	40	0.007
95	ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B ...	40	0.007
96	NUCL_MACFA (Q4R4J7) Nucleolin	40	0.007
97	NUCL_CHICK (P15771) Nucleolin (Protein C23)	40	0.007
98	CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine...	40	0.007
99	CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine...	40	0.007
100	SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized ...	40	0.007
101	NUCL_MESAU (P08199) Nucleolin (Protein C23)	40	0.007
102	ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)	40	0.007
103	NUCL_XENLA (P20397) Nucleolin (Protein C23)	40	0.007
104	SAP49_SCHPO (O14102) Spliceosome-associated protein 49	40	0.007
105	NUCL_PONPY (Q5RF26) Nucleolin	40	0.007
106	HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 ...	40	0.007
107	HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 ...	40	0.007
108	YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 i...	39	0.009
109	GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu...	39	0.009
110	PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-...	39	0.009
111	EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (...	39	0.009
112	HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)	39	0.011
113	ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B ...	39	0.011
114	MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing prote...	39	0.011
115	CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-r...	39	0.011
116	CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine...	39	0.011
117	CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine...	39	0.011
118	ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precur...	39	0.011
119	GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein	39	0.015
120	SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized ...	39	0.015
121	RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-bindin...	39	0.015
122	HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (...	39	0.015
123	NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NO...	38	0.019
124	ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precur...	38	0.019
125	EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (...	38	0.025
126	U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 aux...	38	0.025
127	CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (C...	38	0.025
128	U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 aux...	38	0.025
129	HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (...	38	0.025
130	RNP24_SCHPO (Q09100) RNA-binding protein rnp24	38	0.025
131	RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding ...	38	0.025
132	RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-ri...	37	0.033
133	TRA2_DROME (P19018) Transformer-2 sex-determining protein	37	0.043
134	EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Emb...	37	0.043
135	PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 ...	37	0.043
136	PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 ...	37	0.043
137	NSR1_YEAST (P27476) Nuclear localization sequence-binding protei...	37	0.043
138	HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hn...	37	0.043
139	RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U...	37	0.043
140	RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding ...	37	0.043
141	CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (C...	37	0.043
142	SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a...	37	0.056
143	GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2	37	0.056
144	RNP4F_DROME (Q9W4D2) RNA-binding protein 4F	37	0.056
145	PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppres...	37	0.056
146	HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (...	36	0.073
147	CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine...	36	0.073
148	SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich...	36	0.096
149	SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich...	36	0.096
150	RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-ri...	36	0.096
151	HNRH3_HUMAN (P31942) Heterogeneous nuclear ribonucleoprotein H3 ...	35	0.13
152	LARK_DROME (Q94901) RNA-binding protein lark	35	0.16
153	RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U...	35	0.16
154	RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch...	35	0.16
155	ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalo...	35	0.16
156	ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encepha...	35	0.16
157	TRA2_DROVI (O02008) Transformer-2 sex-determining protein	35	0.16
158	ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encepha...	35	0.16
159	GAR2_SCHPO (P41891) Protein gar2	35	0.16
160	RU2B_MOUSE (Q9CQI7) U2 small nuclear ribonucleoprotein B"	35	0.21
161	RU2B_HUMAN (P08579) U2 small nuclear ribonucleoprotein B"	35	0.21
162	TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)	35	0.21
163	TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding p...	35	0.21
164	ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (E...	35	0.21
165	RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif p...	35	0.21
166	PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b...	35	0.21
167	RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U...	35	0.21
168	HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (...	35	0.21
169	ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)	35	0.21
170	ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2	35	0.21
171	ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (E...	35	0.21
172	RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U...	35	0.21
173	DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)	34	0.28
174	HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hn...	34	0.28
175	PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 ...	34	0.28
176	HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)	34	0.28
177	RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif pro...	34	0.28
178	PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein	34	0.28
179	HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (...	34	0.28
180	GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10	34	0.28
181	YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5	34	0.36
182	ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimu...	34	0.36
183	RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U...	34	0.36
184	SNRPA_HUMAN (P09012) U1 small nuclear ribonucleoprotein A (U1 sn...	34	0.36
185	GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A	34	0.36
186	ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimu...	34	0.36
187	ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimu...	33	0.48
188	ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimula...	33	0.48
189	RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif p...	33	0.48
190	DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autoso...	33	0.48
191	RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15	33	0.48
192	SNRPA_XENLA (P45429) U1 small nuclear ribonucleoprotein A (U1 sn...	33	0.48
193	IF34_SCHPO (P78795) Probable eukaryotic translation initiation f...	33	0.48
194	DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autoso...	33	0.48
195	DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autoso...	33	0.48
196	PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 ...	33	0.62
197	DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autoso...	33	0.81
198	SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Spli...	33	0.81
199	SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Sp...	33	0.81
200	SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Sp...	33	0.81
201	SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Sp...	33	0.81
202	FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)	33	0.81
203	RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial pre...	33	0.81
204	FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncog...	33	0.81
205	FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)	33	0.81
206	HSH49_YEAST (Q99181) Protein HSH49	33	0.81
207	ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (...	33	0.81
208	SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Sp...	33	0.81
209	DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding prote...	32	1.1
210	DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding prote...	32	1.1
211	RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1	32	1.1
212	DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1	32	1.4
213	RAVR2_MOUSE (Q7TPD6) Protein raver-2	32	1.4
214	GRSF1_HUMAN (Q12849) G-rich sequence factor 1 (GRSF-1)	32	1.4
215	TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)	32	1.4
216	SGN1_YEAST (P40561) RNA-binding protein SGN1	32	1.8
217	SNRPA_DROME (P43332) U1 small nuclear ribonucleoprotein A (U1 sn...	32	1.8
218	RAVR2_HUMAN (Q9HCJ3) Protein raver-2	32	1.8
219	ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visu...	32	1.8
220	CNOT4_MOUSE (Q8BT14) CCR4-NOT transcription complex subunit 4 (E...	32	1.8
221	CNOT4_HUMAN (O95628) CCR4-NOT transcription complex subunit 4 (E...	32	1.8
222	GRSF1_MOUSE (Q8C5Q4) G-rich sequence factor 1 (GRSF-1)	32	1.8
223	GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A	32	1.8
224	ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visu...	32	1.8
225	PRAM2_HUMAN (O60811) PRAME family member 2	31	2.4
226	PRAM1_HUMAN (O95521) PRAME family member 1	31	2.4
227	RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C...	31	2.4
228	SNRPA_MOUSE (Q62189) U1 small nuclear ribonucleoprotein A (U1 sn...	31	2.4
229	BOULE_DROME (Q24207) Protein boule	31	2.4
230	PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 ...	31	2.4
231	HNRH2_MOUSE (P70333) Heterogeneous nuclear ribonucleoprotein H' ...	31	2.4
232	HNRH2_HUMAN (P55795) Heterogeneous nuclear ribonucleoprotein H' ...	31	2.4
233	RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1	31	2.4
234	RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1	31	2.4
235	RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1	31	2.4
236	RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1	31	2.4
237	RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain...	31	2.4
238	HNRH1_MOUSE (O35737) Heterogeneous nuclear ribonucleoprotein H (...	31	2.4
239	HNRH1_HUMAN (P31943) Heterogeneous nuclear ribonucleoprotein H (...	31	2.4
240	GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7	31	3.1
241	MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musash...	31	3.1
242	MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musa...	31	3.1
243	MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musa...	31	3.1
244	RU2B_SCHPO (Q7LL14) Probable U2 small nuclear ribonucleoprotein B"	31	3.1
245	SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nucl...	31	3.1
246	PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 ...	31	3.1
247	PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 ...	31	3.1
248	DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in azoosp...	30	4.0
249	DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in azoosp...	30	4.0
250	DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in azoosp...	30	4.0
251	PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 ...	30	4.0
252	PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (E...	30	5.3
253	RALY_MOUSE (Q64012) RNA-binding protein Raly (hnRNP associated w...	30	5.3

---

>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export|
           factor-binding protein 1) (REF1-I) (Ally of AML-1 and
           LEF-1) (Aly/REF)
          Length = 254

 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 60/161 (37%), Positives = 87/161 (54%), Gaps = 2/161 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           +L ++NLDFGVS  D++ELF+E G LK+ ++++DRSGRS GTA+V F R+ DA+ A+K+Y
Sbjct: 105 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 164

Query: 193 NNVQLDGKPMKIEIXXXXXXXXXXXXXXXXXSYARNVAKSAPRGVSASLPQNRPRAXXXX 372
           N V LDG+PM I++                    R  A+S  RG    + +NR       
Sbjct: 165 NGVPLDGRPMNIQLVTSQIDT------------QRRPAQSINRG---GMTRNRGSGGFGG 209

Query: 373 XXXXXXXXXXXXXXXXXKERS--QPRSAEELDAELEKYHAQ 489
                              R+  Q  SAEELDA+L+ Y+A+
Sbjct: 210 GGTRRGTRGGSRGRGRGTGRNSKQQLSAEELDAQLDAYNAR 250

---

>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)|
           (Transcriptional coactivator Aly/REF) (bZIP-enhancing
           factor BEF)
          Length = 256

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 59/162 (36%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           +L ++NLDFGVS  D++ELF+E G LK+ ++++DRSGRS GTA+V F R+ DA+ A+K+Y
Sbjct: 106 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 165

Query: 193 NNVQLDGKPMKIEIXXXXXXXXXXXXXXXXXSYARNVAKSAPRGVSASLPQNRPR---AX 363
           N V LDG+PM I++                    R  A+S  RG    + +NR       
Sbjct: 166 NGVPLDGRPMNIQLVTSQIDA------------QRRPAQSVNRG---GMTRNRGAGGFGG 210

Query: 364 XXXXXXXXXXXXXXXXXXXXKERSQPRSAEELDAELEKYHAQ 489
                               +   Q  SAEELDA+L+ Y+A+
Sbjct: 211 GGGTRRGTRGGARGRGRGAGRNSKQQLSAEELDAQLDAYNAR 252

---

>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2|
          Length = 218

 Score = 95.1 bits (235), Expect = 1e-19
 Identities = 58/159 (36%), Positives = 85/159 (53%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           +L ++NLDFGVS  D++ELF+E G LK+ ++++DRSGRS GTA+V F RR DA+ A+K+Y
Sbjct: 76  KLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQY 135

Query: 193 NNVQLDGKPMKIEIXXXXXXXXXXXXXXXXXSYARNVAKSAPRGVSASLPQNRPRAXXXX 372
             V LDG+PM I++                    R  A+S  RG    + ++R       
Sbjct: 136 KGVPLDGRPMDIQL------------VASQIDPQRRPAQSGNRG---GMTRSR-----GS 175

Query: 373 XXXXXXXXXXXXXXXXXKERSQPRSAEELDAELEKYHAQ 489
                              + Q  SAEELDA+L+ Y+A+
Sbjct: 176 GGFGGRGSQGRGRGTGRNSKQQQLSAEELDAQLDAYNAR 214

---

>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)|
          Length = 591

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 29/73 (39%), Positives = 44/73 (60%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+ NLDF V  + LKE+FS  G +KR  I  D+ G+S+G   V F +  +AV AI  +N
Sbjct: 226 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 285

Query: 196 NVQLDGKPMKIEI 234
              L  +PM +++
Sbjct: 286 GQFLFDRPMHVKM 298



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 21/74 (28%), Positives = 40/74 (54%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           ++F+ NL F ++ + LKE FS+ G +    I  + +G+SKG   V F     A  A +  
Sbjct: 515 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFESAESAEKACRIM 573

Query: 193 NNVQLDGKPMKIEI 234
           N +++ G+ + + +
Sbjct: 574 NGIKISGREIDVRL 587



 Score = 35.8 bits (81), Expect = 0.096
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSE-LGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           +FI+N+ + +  + +K+L  E +G++    +  D  G+S+G   V F        A++  
Sbjct: 93  VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 152

Query: 193 NNVQLDGKPMKIE 231
           N   L G+P+ I+
Sbjct: 153 NKYDLSGRPLNIK 165

---

>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)|
          Length = 600

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 29/73 (39%), Positives = 44/73 (60%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+ NLDF V  + LKE+FS  G +KR  I  D+ G+S+G   V F +  +AV AI  +N
Sbjct: 235 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 294

Query: 196 NVQLDGKPMKIEI 234
              L  +PM +++
Sbjct: 295 GQFLFDRPMHVKM 307



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 21/74 (28%), Positives = 40/74 (54%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           ++F+ NL F ++ + LKE FS+ G +    I  + +G+SKG   V F     A  A +  
Sbjct: 524 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRIM 582

Query: 193 NNVQLDGKPMKIEI 234
           N +++ G+ + + +
Sbjct: 583 NGIKISGREIDVRL 596



 Score = 35.8 bits (81), Expect = 0.096
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSE-LGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           +FI+N+ + +  + +K+L  E +G++    +  D  G+S+G   V F        A++  
Sbjct: 102 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 161

Query: 193 NNVQLDGKPMKIE 231
           N   L G+P+ I+
Sbjct: 162 NKYDLSGRPLNIK 174

---

>MLO3_SCHPO (Q09330) Protein mlo3|
          Length = 199

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 9/165 (5%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELF-SELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKK 189
           ++ ++NL   V+   +KELF   +G  KR S+ +  +GRSKG A +IF+R GDA  A ++
Sbjct: 56  KIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGDATRAYEQ 115

Query: 190 YNNVQLDG-KPMKIEI------XXXXXXXXXXXXXXXXXSYARNVAKSAPRGVS-ASLPQ 345
           Y    +DG + MK+EI                       + ++N AKS+ R  +      
Sbjct: 116 YEGRLVDGTRKMKVEIILDPSRQLNSLAARVSPASNASATASKNGAKSSKRKTTRRRRTP 175

Query: 346 NRPRAXXXXXXXXXXXXXXXXXXXXXKERSQPRSAEELDAELEKY 480
           NRP+                            +SAEELD E++ Y
Sbjct: 176 NRPK----------------------------KSAEELDKEMDDY 192

---

>PDIP3_HUMAN (Q9BY77) Polymerase delta-interacting protein 3 (46 kDa DNA|
           polymerase delta interaction protein) (p46)
          Length = 421

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           ++ + NL   V+ ED+ ELF   G LKR  +         G AEV+F ++ DA+ A KKY
Sbjct: 281 KMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP------GVAEVVFVKKDDAITAYKKY 334

Query: 193 NNVQLDGKPMKIEIXXXXXXXXXXXXXXXXXSYARNVAKSA--PRGVSASLPQNRP 354
           NN  LDG+PMK  +                 S + ++ K +  PR V+++   N P
Sbjct: 335 NNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSMKKESELPRRVNSASSSNPP 390

---

>PDIP3_MOUSE (Q8BG81) Polymerase delta-interacting protein 3|
          Length = 420

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 31/74 (41%), Positives = 43/74 (58%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           ++ + NL   V+ ED+ ELF   G LKR  +         G AEV+F ++ DA+ A KKY
Sbjct: 281 KMTVNNLHPRVTEEDIVELFCVCGALKRARLVHP------GVAEVVFVKKDDAITAYKKY 334

Query: 193 NNVQLDGKPMKIEI 234
           NN  LDG+PMK  +
Sbjct: 335 NNRCLDGQPMKCNL 348

---

>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4|
           protein)
          Length = 689

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 27/73 (36%), Positives = 43/73 (58%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+ NLD+ V  + LKE+FS  G + R  I  D+ G+S+G   V F +  +AV AI  +N
Sbjct: 165 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 224

Query: 196 NVQLDGKPMKIEI 234
              L  +PM +++
Sbjct: 225 GQLLFDRPMHVKM 237



 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +1

Query: 19  FITNLDFGVSTEDLKELFSE-LGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           FITN+ F V  + LK+L  E +G++    +  D  G+S+G A V F        A +  N
Sbjct: 72  FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 131

Query: 196 NVQLDGKPMKIE 231
              L G+P+K++
Sbjct: 132 KHSLSGRPLKVK 143

---

>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2|
           (G-strand-binding protein 2) (RAP1 localization factor
           6)
          Length = 427

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 21/72 (29%), Positives = 44/72 (61%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           E+FI NL + ++ + LK++F E G + R  +  D +G S+G   VI+    + + AI  +
Sbjct: 220 EVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIRAIDTF 279

Query: 193 NNVQLDGKPMKI 228
           N ++++G+ +++
Sbjct: 280 NGMEVEGRVLEV 291



 Score = 37.7 bits (86), Expect = 0.025
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+ NL F  + EDLKELF  +G++    I     G  +G   V F +      AI K++
Sbjct: 124 IFVRNLTFDCTPEDLKELFGTVGEVVEADI-ITSKGHHRGMGTVEFTKNESVQDAISKFD 182

---

>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)|
          Length = 729

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 27/73 (36%), Positives = 43/73 (58%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+ NLD+ V  + LKE+FS  G + R  I  D+ G+S+G   V F +  +AV AI  +N
Sbjct: 205 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 264

Query: 196 NVQLDGKPMKIEI 234
              L  +PM +++
Sbjct: 265 GQLLFDRPMHVKM 277



 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +1

Query: 19  FITNLDFGVSTEDLKELFSE-LGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           FITN+ F V  + LK+L  E +G++    +  D  G+S+G A V F        A +  N
Sbjct: 73  FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 132

Query: 196 NVQLDGKPMKIE 231
              L G+P+K++
Sbjct: 133 KHSLSGRPLKVK 144

---

>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 668

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 24/78 (30%), Positives = 45/78 (57%)
 Frame = +1

Query: 1   IRHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAA 180
           ++   L++ NLD  V+ E LKE+FSE G++  C +  +  G S+G   V ++   +A+ A
Sbjct: 325 LQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLA 384

Query: 181 IKKYNNVQLDGKPMKIEI 234
           +K+ N   +  KP+ + +
Sbjct: 385 MKEMNGKMIGRKPLYVAL 402



 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 27/67 (40%), Positives = 35/67 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NLD  +  + L E FS  G +  C +  D  GRSKG   V F +   A AAI K N
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 193

Query: 196 NVQLDGK 216
            + L+ K
Sbjct: 194 GMLLNDK 200

---

>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)|
          Length = 728

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 27/73 (36%), Positives = 43/73 (58%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+ NLD+ V  + LKE+FS  G + R  I  D+ G+S+G   V F +  +AV AI  +N
Sbjct: 204 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAISMFN 263

Query: 196 NVQLDGKPMKIEI 234
              L  +PM +++
Sbjct: 264 GQLLFDRPMHVKM 276



 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +1

Query: 19  FITNLDFGVSTEDLKELFSE-LGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           FITN+ F V  + LK+L  E +G++    +  D  G+S+G A V F        A +  N
Sbjct: 72  FITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAEVLN 131

Query: 196 NVQLDGKPMKIE 231
              L G+P+K++
Sbjct: 132 KHSLSGRPLKVK 143

---

>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           +LF+ NL F V +  L +LF   G+++   + +D+ +GRS+G   V  +   +  AA ++
Sbjct: 92  KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151

Query: 190 YNNVQLDGKPMKI 228
           +N  +LDG+P+++
Sbjct: 152 FNGYELDGRPLRV 164



 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           +++ NL +GV    L+ LFSE G +    + +DR SGRSKG   V +    +   AIK  
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265

Query: 193 NNVQLDGKPMKI 228
           +   LDG+ +++
Sbjct: 266 DGADLDGRQIRV 277

---

>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PABP 2)
          Length = 629

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 25/73 (34%), Positives = 41/73 (56%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L++ NLD  +S E LKE+FS  G +    +  D +G SKG+  V FA   +A  A+ + +
Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLS 379

Query: 196 NVQLDGKPMKIEI 234
              ++ KP+ + I
Sbjct: 380 GKMIESKPLYVAI 392



 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 25/71 (35%), Positives = 39/71 (54%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NLD  +  + L + FS  G++  C +  D SG+SKG   V +A    A  AI+K N
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185

Query: 196 NVQLDGKPMKI 228
            + L+ K + +
Sbjct: 186 GMLLNDKQVYV 196



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +++ NL    + +DLK  F E G +    +  D  G+SKG   V F    DA  A++  N
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276

Query: 196 NVQLDGK 216
             + D K
Sbjct: 277 GHKFDDK 283

---

>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)|
          Length = 291

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           +++ NL +GV    LKELFSE G++    + +DR SGRS+G   V ++   +   AI   
Sbjct: 209 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSL 268

Query: 193 NNVQLDGKPMKI 228
           N V LDG+ +++
Sbjct: 269 NGVDLDGRSIRV 280



 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 21/73 (28%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           +LF+ NL F V +  L  LF   G+++   + +D+ +GRS+G   V  + + +  AA ++
Sbjct: 88  KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147

Query: 190 YNNVQLDGKPMKI 228
           +N  ++DG+ +++
Sbjct: 148 FNGYEIDGRAIRV 160

---

>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)|
          Length = 292

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           +++ NL +GV    LKELFSE G++    + +DR SGRS+G   V ++   +   AI   
Sbjct: 210 VYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSL 269

Query: 193 NNVQLDGKPMKI 228
           N + LDG+ +++
Sbjct: 270 NGIDLDGRSIRV 281



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 22/73 (30%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           +LF+ NL F V +  L  LF   G+++   + +D+ SGRS+G   V  + + +  AA ++
Sbjct: 89  KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148

Query: 190 YNNVQLDGKPMKI 228
           +N  ++DG+ +++
Sbjct: 149 FNGYEIDGRAIRV 161

---

>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein cp29)
          Length = 342

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 21/73 (28%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           +LF+ NL F V +  L +LF   G+++   + +D+ +GRS+G   V  +   +  AA ++
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159

Query: 190 YNNVQLDGKPMKI 228
           +N  + +G+P+++
Sbjct: 160 FNGYEFEGRPLRV 172



 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           L++ NL +GV    L+ LF+E G +    + +DR SGRSKG   V  +   +   AI   
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318

Query: 193 NNVQLDGKPMKI 228
           N   LDG+ +++
Sbjct: 319 NGADLDGRQIRV 330

---

>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3)
          Length = 660

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 26/67 (38%), Positives = 36/67 (53%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NLD  +  + L E FS  G +  C +  D +GRSKG   V F +   A AAI K N
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197

Query: 196 NVQLDGK 216
            + ++ K
Sbjct: 198 GMLMNDK 204



 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 23/73 (31%), Positives = 40/73 (54%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L++ NLD  V  E LKE+FSE G++    +  +  G S+G   V ++   +A+ A+ + N
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393

Query: 196 NVQLDGKPMKIEI 234
              +  KP+ I +
Sbjct: 394 GKMIGRKPLYIAL 406

---

>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660|
           (Poly(A)-binding protein At2g36660) (PABP)
          Length = 609

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 21/73 (28%), Positives = 42/73 (57%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +++ N++  V+ E+L++ FS+ G +    +  D  G+SKG   V F+   +A+ A+K ++
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365

Query: 196 NVQLDGKPMKIEI 234
                GKP+ + I
Sbjct: 366 GQMFHGKPLYVAI 378



 Score = 35.8 bits (81), Expect = 0.096
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = +1

Query: 4   RHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAI 183
           ++  L++ NLD  VS + L+E F+E G +   +I  D +   +G A V F    DA  A 
Sbjct: 199 KYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAA 258

Query: 184 KKYNNVQLDGK 216
           +  N  +   K
Sbjct: 259 ETVNGTKFGSK 269



 Score = 35.8 bits (81), Expect = 0.096
 Identities = 19/71 (26%), Positives = 37/71 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+ NL   V+   L+++F + G++  C +     G+S+G   V F +   A AAI+  N
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173

Query: 196 NVQLDGKPMKI 228
           +  +  K + +
Sbjct: 174 STIVADKEIYV 184



 Score = 31.2 bits (69), Expect = 2.4
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRS-GRSKGTAEVIFARRGDAVAAIKKY 192
           L++ +L   V+   L + F+E   L    +  D S GRS       F  R DA  AI+K 
Sbjct: 26  LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85

Query: 193 NNVQLDGKPMKI 228
           NN  L+GK +++
Sbjct: 86  NNSLLNGKMIRV 97

---

>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 281

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           L +  L    +  DL+E+FS  G L   ++ +D R+GRS+G A V F R  D+  A+++ 
Sbjct: 119 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 178

Query: 193 NNVQLDGKPMKIE 231
           N ++LDG+ ++++
Sbjct: 179 NGMELDGRRIRVD 191

---

>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 282

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           L +  L    +  DL+E+FS  G L   ++ +D R+GRS+G A V F R  D+  A+++ 
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180

Query: 193 NNVQLDGKPMKIE 231
           N ++LDG+ ++++
Sbjct: 181 NGMELDGRRIRVD 193

---

>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 21/73 (28%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           ++F+ NL F   +  L ELF   G+++   + +D+ +GRS+G   V  + + +  AA ++
Sbjct: 88  KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147

Query: 190 YNNVQLDGKPMKI 228
           +N  +LDG+ +++
Sbjct: 148 FNGYELDGRALRV 160



 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           +++ NL +GV  + L+ LFSE G +    + +DR SGRS+G   V ++   +   AI+  
Sbjct: 190 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 249

Query: 193 NNVQLDGKPMKI 228
           + V L+G+ +++
Sbjct: 250 DGVDLNGRAIRV 261

---

>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 25/71 (35%), Positives = 37/71 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           ++I N    +  E LKELF + G      +  D SG+SKG   V F R  DA  A+ + N
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 196 NVQLDGKPMKI 228
             +L+GK + +
Sbjct: 253 GKELNGKQIYV 263



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L++ NLD G+  E L++ FS  G +    +  +  GRSKG   V F+   +A  A+ + N
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354

Query: 196 NVQLDGKPMKIEI 234
              +  KP+ + +
Sbjct: 355 GRIVATKPLYVAL 367



 Score = 38.9 bits (89), Expect = 0.011
 Identities = 23/67 (34%), Positives = 36/67 (53%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NLD  +  + L + FS  G++  C +  D +G SKG   V F  +  A  AI+K N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159

Query: 196 NVQLDGK 216
            + L+ +
Sbjct: 160 GMLLNDR 166

---

>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 25/71 (35%), Positives = 37/71 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           ++I N    +  E LKELF + G      +  D SG+SKG   V F R  DA  A+ + N
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 196 NVQLDGKPMKI 228
             +L+GK + +
Sbjct: 253 GKELNGKQIYV 263



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L++ NLD G+  E L++ FS  G +    +  +  GRSKG   V F+   +A  A+ + N
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354

Query: 196 NVQLDGKPMKIEI 234
              +  KP+ + +
Sbjct: 355 GRIVATKPLYVAL 367



 Score = 38.9 bits (89), Expect = 0.011
 Identities = 23/67 (34%), Positives = 36/67 (53%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NLD  +  + L + FS  G++  C +  D +G SKG   V F  +  A  AI+K N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159

Query: 196 NVQLDGK 216
            + L+ +
Sbjct: 160 GMLLNDR 166

---

>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)|
          Length = 279

 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 21/73 (28%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           ++F+ NL F   +  L ELF   G+++   + +D+ +GRS+G   V  + + +  AA ++
Sbjct: 88  KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147

Query: 190 YNNVQLDGKPMKI 228
           +N  +LDG+ +++
Sbjct: 148 FNGYELDGRALRV 160



 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           +++ NL +GV  + L+ LFSE G +    + +DR SGRS+G   V ++   +   AI+  
Sbjct: 196 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 255

Query: 193 NNVQLDGKPMKI 228
           + V L+G+ +++
Sbjct: 256 DGVDLNGRAIRV 267

---

>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           LFI N+ +  S ED + LFS+ G L+   I  D R+G+SKG   V F ++ DA  A +  
Sbjct: 312 LFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSL 371

Query: 193 NNVQLDGKPMKI 228
           +     G+ + I
Sbjct: 372 DKQIFQGRLLHI 383



 Score = 31.6 bits (70), Expect = 1.8
 Identities = 19/72 (26%), Positives = 35/72 (48%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L +  L    + E L+E FS+ GD+    +   R+G S+  A + +     A  A+K +N
Sbjct: 4   LIVKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKYFN 63

Query: 196 NVQLDGKPMKIE 231
              +D   +++E
Sbjct: 64  KSFIDTARIEVE 75

---

>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1|
          Length = 861

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+ N+ +  + +D K+LFS  G+LK   +  D R+G SKG A V+FA+  +AV A  + 
Sbjct: 327 LFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIEL 386

Query: 193 NNVQLDGKPMKI 228
           +     G+ + I
Sbjct: 387 DKQIFQGRLLHI 398

---

>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3) (Testis-specific poly(A)-binding protein)
          Length = 631

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 24/71 (33%), Positives = 37/71 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           ++I N    +  E LK+LF + G      +  D SG+SKG   V F R  DA  A+ + N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 196 NVQLDGKPMKI 228
             +L+GK + +
Sbjct: 253 GKELNGKQIYV 263



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L++ NLD G+  E L++ FS  G +    +  +  GRSKG   V F+   +A  A+ + N
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354

Query: 196 NVQLDGKPMKIEI 234
              +  KP+ + +
Sbjct: 355 GRIVATKPLYVAL 367



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 23/67 (34%), Positives = 37/67 (55%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+ NLD  ++ + L +  S  G++  C++  D +G SKG   V F     A  AIKK N
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMN 159

Query: 196 NVQLDGK 216
            + L+G+
Sbjct: 160 GMLLNGR 166

---

>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 24/71 (33%), Positives = 37/71 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           ++I N    +  E LK+LF + G      +  D SG+SKG   V F R  DA  A+ + N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 196 NVQLDGKPMKI 228
             +L+GK + +
Sbjct: 253 GKELNGKQIYV 263



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L++ NLD G+  E L++ FS  G +    +  +  GRSKG   V F+   +A  A+ + N
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354

Query: 196 NVQLDGKPMKIEI 234
              +  KP+ + +
Sbjct: 355 GRIVATKPLYVAL 367



 Score = 38.9 bits (89), Expect = 0.011
 Identities = 23/67 (34%), Positives = 36/67 (53%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NLD  +  + L + FS  G++  C +  D +G SKG   V F  +  A  AI+K N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159

Query: 196 NVQLDGK 216
            + L+ +
Sbjct: 160 GMLLNDR 166

---

>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 24/71 (33%), Positives = 37/71 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           ++I N    +  E LK+LF + G      +  D SG+SKG   V F R  DA  A+ + N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 196 NVQLDGKPMKI 228
             +L+GK + +
Sbjct: 253 GKELNGKQIYV 263



 Score = 40.0 bits (92), Expect = 0.005
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L++ NLD G+  E L++ FS  G +    +  +  GRSKG   V F+   +A  A+ + N
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354

Query: 196 NVQLDGKPMKIEI 234
              +  KP+ + +
Sbjct: 355 GRIVATKPLYVAL 367



 Score = 38.9 bits (89), Expect = 0.011
 Identities = 23/67 (34%), Positives = 36/67 (53%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NLD  +  + L + FS  G++  C +  D +G SKG   V F  +  A  AI+K N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159

Query: 196 NVQLDGK 216
            + L+ +
Sbjct: 160 GMLLNDR 166

---

>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear|
           (Poly(A)-binding protein) (PABP) (ARS consensus-binding
           protein ACBP-67) (Polyadenylate tail-binding protein)
          Length = 576

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 25/73 (34%), Positives = 38/73 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           LF+ NLD  V  E L+E F+  G +    +    +G+SKG   V F+   +A  AI + N
Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN 382

Query: 196 NVQLDGKPMKIEI 234
              + GKP+ + I
Sbjct: 383 QQIVAGKPLYVAI 395



 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 20/74 (27%), Positives = 42/74 (56%)
 Frame = +1

Query: 7   HEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIK 186
           +  L++ N++   + E  +ELF++ G +   S+  D  G+ KG   V + +  DAV A++
Sbjct: 217 YTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVE 276

Query: 187 KYNNVQLDGKPMKI 228
             N+ +L+G+ + +
Sbjct: 277 ALNDSELNGEKLYV 290



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 24/71 (33%), Positives = 36/71 (50%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NL   +  + L + FS  GD+    I  D +G+SKG   V F   G A  AI   N
Sbjct: 127 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 186

Query: 196 NVQLDGKPMKI 228
            + L+G+ + +
Sbjct: 187 GMLLNGQEIYV 197

---

>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 266

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 33/111 (29%), Positives = 51/111 (45%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           LF+ NL+  V+ E L ELF + G + +  I  D+ G+ K  A V F        A+   N
Sbjct: 12  LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71

Query: 196 NVQLDGKPMKIEIXXXXXXXXXXXXXXXXXSYARNVAKSAPRGVSASLPQN 348
            ++L G+P+KI+                     R+ +  AP+ VS S PQ+
Sbjct: 72  GIKLYGRPIKIQF--------------------RSGSSHAPQDVSLSYPQH 102

---

>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor|
          Length = 324

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 19/75 (25%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRS-GRSKGTAEVIFARRGDAVAAIKK 189
           +L++ NL + ++++ L++ F++        + +DRS GRS+G   + F+      +A+  
Sbjct: 218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDT 277

Query: 190 YNNVQLDGKPMKIEI 234
            N V+L+G+P+++ +
Sbjct: 278 MNEVELEGRPLRLNV 292



 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           L++ NL F +++  L E+F+E G +    I +DR + RS+G A V      +A  AI+ +
Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 175

Query: 193 NNVQLDGKPMKI 228
           +  Q+ G+ +K+
Sbjct: 176 DGSQVGGRTVKV 187

---

>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein|
           4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP)
           (Activated-platelet protein 1) (APP-1)
          Length = 644

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 23/67 (34%), Positives = 36/67 (53%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           ++I N    V  E LKELFS+ G      +  D +G+SKG   V + +  DA  A+++ N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252

Query: 196 NVQLDGK 216
             ++ GK
Sbjct: 253 GKEISGK 259



 Score = 39.7 bits (91), Expect = 0.007
 Identities = 24/67 (35%), Positives = 37/67 (55%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NLD  +  + L + FS  G++  C +  D +G SKG A V F  +  A  AI+K N
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159

Query: 196 NVQLDGK 216
            + L+ +
Sbjct: 160 GMLLNDR 166



 Score = 39.3 bits (90), Expect = 0.009
 Identities = 22/73 (30%), Positives = 37/73 (50%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L+I NLD  +  E L++ FS  G +    +  +  GRSKG   V F+   +A  A+ + N
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354

Query: 196 NVQLDGKPMKIEI 234
              +  KP+ + +
Sbjct: 355 GRIVGSKPLYVAL 367

---

>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 634

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 23/71 (32%), Positives = 36/71 (50%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NLD  +  + + + FS  G++  C +  D  G SKG   V F     A  +I K N
Sbjct: 92  VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVN 151

Query: 196 NVQLDGKPMKI 228
            + L+GK + +
Sbjct: 152 GMLLNGKKVYV 162



 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
 Frame = +1

Query: 4   RHEELF-----ITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGD 168
           RHE +F     + NLD  +  + L+  FS  G++    +  D  GRSKG   V F    +
Sbjct: 280 RHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASE 339

Query: 169 AVAAIKKYNNVQLDGKPMKIEI 234
           A  A+ + N   +  KP+ + +
Sbjct: 340 ATCAVTELNGRVVGSKPLYVAL 361



 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +++ N       E LKE F   G +    +     G+SKG   V F     A AA++  N
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244

Query: 196 NVQL-DGKPMKI 228
              + +GK + +
Sbjct: 245 GKDMGEGKSLYV 256

---

>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial|
           precursor (AtGRP2)
          Length = 158

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           +LFI  L +G     L++ F+  GD+    +  DR +GRS+G   V F   G A AAI +
Sbjct: 36  KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95

Query: 190 YNNVQLDGKPMKI 228
            +  +L+G+ +++
Sbjct: 96  MDGKELNGRHIRV 108

---

>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 653

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 26/73 (35%), Positives = 35/73 (47%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           LFI NL   V  E LK  FS  G +    I  D  G+SKG   V +    +A  A+ + N
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425

Query: 196 NVQLDGKPMKIEI 234
              L GKP+ + +
Sbjct: 426 QRMLAGKPLYVAL 438



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 23/71 (32%), Positives = 35/71 (49%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NLD  +  + L + FS  G +  C +  D  G +KG   V F     A AAI+  N
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229

Query: 196 NVQLDGKPMKI 228
            + L+ K + +
Sbjct: 230 GMLLNDKKVYV 240



 Score = 37.7 bits (86), Expect = 0.025
 Identities = 17/71 (23%), Positives = 39/71 (54%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           ++I NLD  ++ ++  +LF + G++   S+  D++ + +G   V +A    A  A+ + N
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322

Query: 196 NVQLDGKPMKI 228
           + +  GK + +
Sbjct: 323 DKEYKGKKLYV 333

---

>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 960

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGR----SKGTAEVIFARRGDAVAAI 183
           LFI NL+F  + E LKE+FS++G +K CSI+  ++      S G   V + +   A  A+
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791

Query: 184 KKYNNVQLDGKPMKIEI 234
           K+     +DG  +++ I
Sbjct: 792 KQLQGHVVDGHKLEVRI 808



 Score = 38.9 bits (89), Expect = 0.011
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L + NL  G+  E  ++LF+  G L  CS+ F + G+ +    + F    +A  A K +N
Sbjct: 4   LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHFN 63

Query: 196 NVQLDGKPMKIE 231
              +D   + +E
Sbjct: 64  KSFIDTSRITVE 75



 Score = 33.1 bits (74), Expect = 0.62
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+ NL +  + EDL++LFS+ G L       D  + + KG A + F     AV A  + 
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463

Query: 193 NNVQLDGKPMKI 228
           +     G+ + +
Sbjct: 464 DGQVFQGRMLHV 475



 Score = 30.4 bits (67), Expect = 4.0
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +1

Query: 13   ELFITNLDFGVSTEDLKELFSELGDLK--RCSINFDRSGRSKGTAEVIFARRGDAVAAIK 186
            ++ + N+ F   + +++ELFS  G+LK  R       +G  +G   V F  + DA  A  
Sbjct: 833  KILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFN 892

Query: 187  KY-NNVQLDGKPMKIE 231
               ++  L G+ + +E
Sbjct: 893  ALCHSTHLYGRRLVLE 908

---

>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 22/76 (28%), Positives = 39/76 (51%)
 Frame = +1

Query: 1   IRHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAA 180
           I    L ++N+ F ++ ED+K +F   GD++   +  D   RSKG   + +     A  A
Sbjct: 337 IPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNA 396

Query: 181 IKKYNNVQLDGKPMKI 228
           ++K N   L G+ M++
Sbjct: 397 LEKMNGFDLAGRNMRV 412



 Score = 33.9 bits (76), Expect = 0.36
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           +F++ L   +++ +L + F + G ++   I  D+ SGRSKG A V F    D+V A    
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHE-DSVQAAIAL 300

Query: 193 NNVQLDGKPMKIEIXXXXXXXXXXXXXXXXXSYARNVAKSAPRGVSASLPQNR 351
           +  +L G P+ +++                   AR  A+ A R  SA +P +R
Sbjct: 301 SGKRLLGLPVIVQLTEAEKNRK-----------AREAAELA-RAASAEIPFHR 341

---

>SXL_MUSDO (O17310) Sex-lethal homolog|
          Length = 324

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
 Frame = +1

Query: 1   IRHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVA 177
           I+   L++TNL   ++ ++L+++F + G++ + +I  D+ +GR +G A V F +R +A  
Sbjct: 185 IKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQE 244

Query: 178 AIKKYNNVQLDGKPMKIEI 234
           AI   NNV  +G    + +
Sbjct: 245 AISALNNVIPEGASQPLTV 263

---

>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (RA301)
          Length = 288

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           L +  L    +  DL+E+FS+ G +   SI +D+ S RS+G A V F    DA  A ++ 
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179

Query: 193 NNVQLDGKPMKIE 231
           N ++LDG+ ++++
Sbjct: 180 NGMELDGRRIRVD 192

---

>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog) (Silica-induced gene 41 protein) (SIG-41)
          Length = 288

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           L +  L    +  DL+E+FS+ G +   SI +D+ S RS+G A V F    DA  A ++ 
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179

Query: 193 NNVQLDGKPMKIE 231
           N ++LDG+ ++++
Sbjct: 180 NGMELDGRRIRVD 192

---

>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10|
           (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein
           homolog)
          Length = 288

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           L +  L    +  DL+E+FS+ G +   SI +D+ S RS+G A V F    DA  A ++ 
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179

Query: 193 NNVQLDGKPMKIE 231
           N ++LDG+ ++++
Sbjct: 180 NGMELDGRRIRVD 192

---

>BOLL_MACFA (Q8WP23) Protein boule-like|
          Length = 283

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 22/71 (30%), Positives = 37/71 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+  +DF  +  DL++ FS+ G +K   I  DR+G SKG   V F  + DA   +++  
Sbjct: 35  IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 94

Query: 196 NVQLDGKPMKI 228
            +    K + I
Sbjct: 95  KLNYKDKKLNI 105

---

>BOLL_HUMAN (Q8N9W6) Protein boule-like|
          Length = 283

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 22/71 (30%), Positives = 37/71 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+  +DF  +  DL++ FS+ G +K   I  DR+G SKG   V F  + DA   +++  
Sbjct: 35  IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAE 94

Query: 196 NVQLDGKPMKI 228
            +    K + I
Sbjct: 95  KLNYKDKKLNI 105

---

>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein|
           1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A)
           (PABP 1-A) (xPABP1-A)
          Length = 633

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 23/69 (33%), Positives = 36/69 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           ++I N    ++ E LKE+F + G      +  D +G+SKG   V F R  DA  A+ + N
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMN 252

Query: 196 NVQLDGKPM 222
              ++GK M
Sbjct: 253 GKDMNGKSM 261



 Score = 38.1 bits (87), Expect = 0.019
 Identities = 23/67 (34%), Positives = 35/67 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NLD  +  + L + FS  G++  C +  D +G SKG   V F  +  A  AI K N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159

Query: 196 NVQLDGK 216
            + L+ +
Sbjct: 160 GMLLNDR 166



 Score = 37.7 bits (86), Expect = 0.025
 Identities = 21/73 (28%), Positives = 37/73 (50%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L++ NLD G+  E L++ F   G +    +  +  GRSKG   V F+   +A  A+ + N
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354

Query: 196 NVQLDGKPMKIEI 234
              +  KP+ + +
Sbjct: 355 GRIVATKPLYVAL 367

---

>BOLL_MOUSE (Q924M5) Protein boule-like|
          Length = 281

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 21/71 (29%), Positives = 37/71 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+  +DF  +  DL++ FS+ G +K   I  DR+G SKG   + F  + DA   +++  
Sbjct: 35  IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQKILQEAE 94

Query: 196 NVQLDGKPMKI 228
            +    K + I
Sbjct: 95  KLNYKDKKLNI 105

---

>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor|
          Length = 315

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           +++ N+ +G+    L++LFSE G +    + +DR +GRS+G   V  A   +   AI   
Sbjct: 232 IYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANL 291

Query: 193 NNVQLDGKPMKIEI 234
           +   LDG+ +++ +
Sbjct: 292 DGQSLDGRTIRVNV 305

---

>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 262

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 25/72 (34%), Positives = 39/72 (54%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           LF+ NL+  V+ E L ELF + G + +  I  D+ G+ K  A V F        A+   N
Sbjct: 12  LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71

Query: 196 NVQLDGKPMKIE 231
            ++L G+P+KI+
Sbjct: 72  GIKLFGRPIKIQ 83

---

>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)|
           (Ribonucleoprotein RBM8A)
          Length = 174

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+T +    + ED+ + F+E G++K   +N D R+G  KG   V +    +A AA++  
Sbjct: 75  LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134

Query: 193 NNVQLDGKPMKIE 231
           N   L G+P+ ++
Sbjct: 135 NGQDLMGQPISVD 147

---

>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)|
           (Ribonucleoprotein RBM8A) (RNA-binding protein Y14)
           (Binder of OVCA1-1) (BOV-1)
          Length = 174

 Score = 42.7 bits (99), Expect = 8e-04
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+T +    + ED+ + F+E G++K   +N D R+G  KG   V +    +A AA++  
Sbjct: 75  LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134

Query: 193 NNVQLDGKPMKIE 231
           N   L G+P+ ++
Sbjct: 135 NGQDLMGQPISVD 147

---

>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3|
           subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding
           subunit) (eIF3g)
          Length = 256

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
 Frame = +1

Query: 22  ITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKYNN 198
           +TNL   ++ ++L++LF ++G + R  I  D+ +G  KG A V F  R DA  AI + N+
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239

Query: 199 VQLDGKPMKIE 231
           +++    +K+E
Sbjct: 240 IRMYHMVLKVE 250

---

>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 265

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 25/72 (34%), Positives = 39/72 (54%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           LF+ NL+  V+ E L ELF + G + +  I  D+ G+ K  A V F        A+   N
Sbjct: 12  LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYAMNLLN 71

Query: 196 NVQLDGKPMKIE 231
            ++L G+P+KI+
Sbjct: 72  GIKLFGRPIKIQ 83

---

>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of|
           activating protein 1 and estrogen receptors)
           (Coactivator of AP-1 and ERs) (Transcription coactivator
           CAPER)
          Length = 530

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           L++ +L F ++ + L+ +F   G ++   +  D  +GRSKG   + F+    A  A+++ 
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query: 193 NNVQLDGKPMKI 228
           N  +L G+PMK+
Sbjct: 312 NGFELAGRPMKV 323

---

>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular|
           carcinoma protein 1) (Splicing factor HCC1)
          Length = 530

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           L++ +L F ++ + L+ +F   G ++   +  D  +GRSKG   + F+    A  A+++ 
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311

Query: 193 NNVQLDGKPMKI 228
           N  +L G+PMK+
Sbjct: 312 NGFELAGRPMKV 323

---

>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein|
           11)
          Length = 281

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 24/72 (33%), Positives = 37/72 (51%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+ NL+  V  E L ELF + G L + +I  DR G+ K    V F        AI   N
Sbjct: 12  VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 71

Query: 196 NVQLDGKPMKIE 231
            ++L G+P+ ++
Sbjct: 72  GIRLYGRPINVQ 83

---

>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member|
           A1 (RNA-binding motif protein 1)
          Length = 496

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 24/73 (32%), Positives = 38/73 (52%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           +LFI  L+   + + LK +F + G +    +  DR+ +S+G A + F    DA  A K  
Sbjct: 9   KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDM 68

Query: 193 NNVQLDGKPMKIE 231
           N   L GK +K+E
Sbjct: 69  NGKSLHGKAIKVE 81

---

>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)|
          Length = 165

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+T++      ++++E F + G++K   +N D R+G SKG A V +     A+AA +  
Sbjct: 75  LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 134

Query: 193 NNVQLDGKPMKIE 231
           N  ++ G+ ++++
Sbjct: 135 NGAEIMGQTIQVD 147

---

>NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2|
          Length = 208

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
 Frame = +1

Query: 1   IRHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSK-GTAEVIFARRGDAVA 177
           ++   +++ NL F  S E + ELFS+ G +KR  +  DR   +  G   +I++   +A+ 
Sbjct: 43  MKSSTIYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFCFIIYSCPDEALN 102

Query: 178 AIKKYNNVQLDGKPMKIEI 234
           A+K  ++ +LD K + I++
Sbjct: 103 ALKYLSDTKLDEKTITIDL 121

---

>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           ++I NLD  ++ E LKE FS  G + R  +  +  G+ KG   V F+   +A  A+ + N
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMN 362

Query: 196 NVQLDGKPMKIEI 234
              +  KP+ + +
Sbjct: 363 GRVVGSKPLHVTL 375



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+ N+   +  E LKELF E G  +   +  D SG+SKG   V +     A  A+   +
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260

Query: 196 NVQLDGKPMKI 228
              +DGK + +
Sbjct: 261 GKSIDGKVLYV 271



 Score = 37.7 bits (86), Expect = 0.025
 Identities = 25/71 (35%), Positives = 36/71 (50%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NLD  +    L  LFS  G++  C +  D +G SKG A V F     A  AI   N
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166

Query: 196 NVQLDGKPMKI 228
            V+L+ + + +
Sbjct: 167 GVRLNNRQVYV 177

---

>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap|
           binding protein) (NCBP 20 kDa subunit) (CBP20)
           (Fragment)
          Length = 148

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSK-GTAEVIFARRGDAVAAIKKY 192
           L++ NL F  + E + ELFS+ GD+KR  +  D+  ++  G   V +  R DA  A++  
Sbjct: 34  LYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRADAGTAMRFI 93

Query: 193 NNVQLDGKPMKIE 231
           N  +LD + ++ +
Sbjct: 94  NGTRLDDRIVRTD 106

---

>NUCL_RAT (P13383) Nucleolin (Protein C23)|
          Length = 712

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 20/71 (28%), Positives = 39/71 (54%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L   NL F ++ ++LKE+F +  +++  S    + GRSKG A + F    DA   +++  
Sbjct: 398 LLAKNLSFNITEDELKEVFEDAVEIRLVS----QDGRSKGIAYIEFKSEADAEKNLEEKQ 453

Query: 196 NVQLDGKPMKI 228
             ++DG+ + +
Sbjct: 454 GAEIDGRSVSL 464



 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           LF+  L    + E LKE F   G ++   +    +G SKG   V F    DA AA +   
Sbjct: 576 LFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 633

Query: 196 NVQLDGKPMKIE 231
           + ++DG  + ++
Sbjct: 634 DGEIDGNKVTLD 645

---

>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           ++I NLD  ++ E LKE FS  G + R  +  +  G+ KG   V F+   +A  A+ + N
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMN 362

Query: 196 NVQLDGKPMKIEI 234
              +  KP+ + +
Sbjct: 363 GRIVGSKPLHVTL 375



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+ N+   +  E LKELF E G  +   +  D SG+SKG   V +     A  A+   +
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260

Query: 196 NVQLDGKPMKI 228
              +DGK + +
Sbjct: 261 GKSIDGKVLYV 271



 Score = 37.7 bits (86), Expect = 0.025
 Identities = 25/71 (35%), Positives = 36/71 (50%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NLD  +    L  LFS  G++  C +  D +G SKG A V F     A  AI   N
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166

Query: 196 NVQLDGKPMKI 228
            V+L+ + + +
Sbjct: 167 GVRLNNRQVYV 177

---

>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           ++I NLD  ++ E LKE FS  G + R  +  +  G+ KG   V F+   +A  A+ + N
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMN 362

Query: 196 NVQLDGKPMKIEI 234
              +  KP+ + +
Sbjct: 363 GRIVGSKPLHVTL 375



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+ N+   +  E LKELF E G  +   +  D SG+SKG   V +     A  A+   +
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260

Query: 196 NVQLDGKPMKI 228
              +DGK + +
Sbjct: 261 GKSIDGKVLYV 271



 Score = 37.7 bits (86), Expect = 0.025
 Identities = 25/71 (35%), Positives = 36/71 (50%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NLD  +    L  LFS  G++  C +  D +G SKG A V F     A  AI   N
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166

Query: 196 NVQLDGKPMKI 228
            V+L+ + + +
Sbjct: 167 GVRLNNRQVYV 177

---

>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           ++I NLD  ++ E LKE FS  G + R  +  +  G+ KG   V F+   +A  A+ + N
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMN 362

Query: 196 NVQLDGKPMKIEI 234
              +  KP+ + +
Sbjct: 363 GRIVGSKPLHVTL 375



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+ N+   +  E LKELF E G  +   +  D SG+SKG   V +     A  A+   +
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260

Query: 196 NVQLDGKPMKI 228
              +DGK + +
Sbjct: 261 GKSIDGKVLYV 271



 Score = 37.7 bits (86), Expect = 0.025
 Identities = 25/71 (35%), Positives = 36/71 (50%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NLD  +    L  LFS  G++  C +  D +G SKG A V F     A  AI   N
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166

Query: 196 NVQLDGKPMKI 228
            V+L+ + + +
Sbjct: 167 GVRLNNRQVYV 177

---

>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           ++I NLD  ++ E LKE FS  G + R  +  +  G+ KG   V F+   +A  A+ + N
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMN 362

Query: 196 NVQLDGKPMKIEI 234
              +  KP+ + +
Sbjct: 363 GRIVGSKPLHVTL 375



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+ N+   +  E LKELF E G  +   +  D SG+SKG   V +     A  A+   +
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260

Query: 196 NVQLDGKPMKI 228
              +DGK + +
Sbjct: 261 GKSIDGKVLYV 271



 Score = 37.7 bits (86), Expect = 0.025
 Identities = 25/71 (35%), Positives = 36/71 (50%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NLD  +    L  LFS  G++  C +  D +G SKG A V F     A  AI   N
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166

Query: 196 NVQLDGKPMKI 228
            V+L+ + + +
Sbjct: 167 GVRLNNRQVYV 177

---

>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 22/73 (30%), Positives = 38/73 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           ++I NLD  ++ E LKE FS  G + R  +  +  G+ KG   V F+   +A  A+ + N
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMN 362

Query: 196 NVQLDGKPMKIEI 234
              +  KP+ + +
Sbjct: 363 GRIVGSKPLHVTL 375



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+ N+   +  E LKELF E G  +   +  D SG+SKG   V +     A  A+   +
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260

Query: 196 NVQLDGKPMKI 228
              +DGK + +
Sbjct: 261 GKSIDGKVLYV 271



 Score = 37.7 bits (86), Expect = 0.025
 Identities = 25/71 (35%), Positives = 36/71 (50%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NLD  +    L  LFS  G++  C +  D +G SKG A V F     A  AI   N
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMN 166

Query: 196 NVQLDGKPMKI 228
            V+L+ + + +
Sbjct: 167 GVRLNNRQVYV 177

---

>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 353

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           ++FI  L +  + +DLK+ FS+ GD+  C++  D  +GRS+G   V+F +  ++V  +  
Sbjct: 96  KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVMD 154

Query: 190 YNNVQLDGK 216
               +L+GK
Sbjct: 155 QKEHKLNGK 163

---

>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1|
          Length = 878

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+ N+ +  + +D ++LFS  G+L+   I  D R+G+SKG A V+F    +A  A  + 
Sbjct: 332 LFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVEL 391

Query: 193 NNVQLDGKPMKI 228
           +     G+ + I
Sbjct: 392 DKQIFQGRLLHI 403

---

>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear|
           cap-binding protein) (NCBP 20 kDa subunit) (CBP20)
          Length = 156

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSK-GTAEVIFARRGDAVAAIKKY 192
           L++ NL F  + E + ELFS+ GD+K+  +  D+  ++  G   V +  R DA  A++  
Sbjct: 42  LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101

Query: 193 NNVQLDGKPMKIE 231
           N  +LD + ++ +
Sbjct: 102 NGTRLDDRIIRTD 114

---

>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear|
           cap-binding protein) (NCBP 20 kDa subunit) (CBP20)
           (NCBP-interacting protein 1) (NIP1) (Cell
           proliferation-inducing gene 55 protein)
          Length = 156

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSK-GTAEVIFARRGDAVAAIKKY 192
           L++ NL F  + E + ELFS+ GD+K+  +  D+  ++  G   V +  R DA  A++  
Sbjct: 42  LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101

Query: 193 NNVQLDGKPMKIE 231
           N  +LD + ++ +
Sbjct: 102 NGTRLDDRIIRTD 114

---

>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2|
          Length = 156

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSK-GTAEVIFARRGDAVAAIKKY 192
           L++ NL F  + E + ELFS+ GD+K+  +  D+  ++  G   V +  R DA  A++  
Sbjct: 42  LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101

Query: 193 NNVQLDGKPMKIE 231
           N  +LD + ++ +
Sbjct: 102 NGTRLDDRIIRTD 114

---

>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1|
          Length = 887

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+ N+ +    ED ++LFS  G+L+   +  D R+G+SKG A V+F    +AV A  + 
Sbjct: 347 LFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVEL 406

Query: 193 NNVQLDGKPMKI 228
           +     G+ + I
Sbjct: 407 DKQIFQGRLLHI 418

---

>YBLC_SCHPO (Q9URV0) Hypothetical RNA-binding protein C106.12c in chromosome II|
          Length = 274

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 23/69 (33%), Positives = 37/69 (53%)
 Frame = +1

Query: 22  ITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYNNV 201
           + NL + V  +D+  LF     + R  +N+DR+GRS+G+ +V F    DA  A K   + 
Sbjct: 89  VENLHYQVLEKDVLSLFENFHPI-RVIMNYDRAGRSEGSCDVYFETSQDAEDAQKTLQST 147

Query: 202 QLDGKPMKI 228
            L G  ++I
Sbjct: 148 NLKGSEIQI 156

---

>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 952

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGR----SKGTAEVIFARRGDAVAAI 183
           LFI NL+F  + E LK +FS++G +K C+I+  ++      S G   V + +   A  A+
Sbjct: 724 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 783

Query: 184 KKYNNVQLDGKPMKIEI 234
           K+     +DG  +++ I
Sbjct: 784 KQLQGHTVDGHKLEVRI 800



 Score = 38.5 bits (88), Expect = 0.015
 Identities = 19/72 (26%), Positives = 36/72 (50%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L + NL  G+  E  ++LF+  G L  CS+ F + G+ +    + F    +A AA+  ++
Sbjct: 4   LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNHFH 63

Query: 196 NVQLDGKPMKIE 231
              +D   + +E
Sbjct: 64  RSFIDTTRITVE 75



 Score = 33.9 bits (76), Expect = 0.36
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+ NL +  S EDL++LFS  G L       D  + + KG A V F     AV A  + 
Sbjct: 402 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 461

Query: 193 NNVQLDGKPMKI 228
           +     G+ + +
Sbjct: 462 DGQVFQGRMLHV 473



 Score = 30.4 bits (67), Expect = 4.0
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +1

Query: 13   ELFITNLDFGVSTEDLKELFSELGDLK--RCSINFDRSGRSKGTAEVIFARRGDAVAAIK 186
            ++ + N+ F  +  +++ELFS  G+LK  R       +G  +G   V F  + DA  A  
Sbjct: 825  KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFN 884

Query: 187  KY-NNVQLDGKPMKIE 231
               ++  L G+ + +E
Sbjct: 885  ALCHSTHLYGRRLVLE 900

---

>SXL_DROSU (Q24668) Protein sex-lethal|
          Length = 354

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
 Frame = +1

Query: 1   IRHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVA 177
           I+   L++TNL   ++ + L  +F + G + + +I  D+ +GR +G A V + +R +A  
Sbjct: 210 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQE 269

Query: 178 AIKKYNNVQLDG--KPMKIEI 234
           AI   NNV  +G  +P+ + +
Sbjct: 270 AISALNNVIPEGGSQPLSVRL 290

---

>SXL_DROME (P19339) Protein sex-lethal|
          Length = 354

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
 Frame = +1

Query: 1   IRHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVA 177
           I+   L++TNL   ++ + L  +F + G + + +I  D+ +GR +G A V + +R +A  
Sbjct: 208 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQE 267

Query: 178 AIKKYNNVQLDG--KPMKIEI 234
           AI   NNV  +G  +P+ + +
Sbjct: 268 AISALNNVIPEGGSQPLSVRL 288

---

>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 18/73 (24%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           +F+ N+ +  + E LK++FSE+G +    + +DR +G+ KG     +  +  A++A++  
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query: 193 NNVQLDGKPMKIE 231
           N  +  G+ ++++
Sbjct: 78  NGREFSGRALRVD 90

---

>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 616

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 18/73 (24%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           +F+ N+ +  + E LK++FSE+G +    + +DR +G+ KG     +  +  A++A++  
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query: 193 NNVQLDGKPMKIE 231
           N  +  G+ ++++
Sbjct: 78  NGREFSGRALRVD 90

---

>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1|
          Length = 827

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 19/57 (33%), Positives = 33/57 (57%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIK 186
           LF+ NL + V+ +D++E F++ G L    +  D  G SKG A + + +   A+AA +
Sbjct: 310 LFLRNLSYTVTEDDVREHFAKFGILVEVHVPLDSKGHSKGFAMIRYEKPASALAAFQ 366



 Score = 30.4 bits (67), Expect = 4.0
 Identities = 19/73 (26%), Positives = 36/73 (49%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           +L + NL F V+ ++++ LFS  G L    I    +  S+G A   F+   +A+ A    
Sbjct: 705 KLVVKNLPFEVTKKEVRTLFSAYGKLVALRIPKKFNQSSRGFAFAEFSTAKEALNAFNSL 764

Query: 193 NNVQLDGKPMKIE 231
            +  + G+ + I+
Sbjct: 765 KDTHILGRRLVID 777

---

>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)|
          Length = 169

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = +1

Query: 19  FITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKYN 195
           F+  L +  + EDL+  FS+ GD+    I  DR SGRS+G   V F        AI++ N
Sbjct: 9   FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 196 NVQLDGKPMKI 228
             +LDG+ + +
Sbjct: 69  GKELDGRVITV 79

---

>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 580

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 18/73 (24%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           +F+ N+ +  + E LK++FSE+G +    + +DR +G+ KG     +  +  A++A++  
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query: 193 NNVQLDGKPMKIE 231
           N  +  G+ ++++
Sbjct: 78  NGREFSGRALRVD 90

---

>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 18/73 (24%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           +F+ N+ +  + E LK++FSE+G +    + +DR +G+ KG     +  +  A++A++  
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query: 193 NNVQLDGKPMKIE 231
           N  +  G+ ++++
Sbjct: 78  NGREFSGRALRVD 90

---

>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 18/73 (24%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           +F+ N+ +  + E LK++FSE+G +    + +DR +G+ KG     +  +  A++A++  
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query: 193 NNVQLDGKPMKIE 231
           N  +  G+ ++++
Sbjct: 78  NGREFSGRALRVD 90

---

>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I|
          Length = 219

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 22/74 (29%), Positives = 37/74 (50%)
 Frame = +1

Query: 7   HEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIK 186
           H  LF+ NL   V+ E L + FSE   L +  +  DR G+++G   V F      + A +
Sbjct: 29  HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWR 88

Query: 187 KYNNVQLDGKPMKI 228
           + N   +  +P+K+
Sbjct: 89  EKNGKYIGSRPVKL 102

---

>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1|
          Length = 838

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIF 153
           LF+ N+ +  + ED K+LFS  G+L+   +  D R+G+SKG A V+F
Sbjct: 303 LFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLF 349

---

>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 18/73 (24%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           +F+ N+ +  + E LK++FSE+G +    + +DR +G+ KG     +  +  A++A++  
Sbjct: 18  VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77

Query: 193 NNVQLDGKPMKIE 231
           N  +  G+ ++++
Sbjct: 78  NGREFSGRALRVD 90

---

>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3|
            (SART-3)
          Length = 981

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 21/78 (26%), Positives = 40/78 (51%)
 Frame = +1

Query: 1    IRHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAA 180
            +   +LFI+ L F  + E+L+E+    G +K   +  +R+G+ KG A V +     A  A
Sbjct: 816  LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQA 875

Query: 181  IKKYNNVQLDGKPMKIEI 234
            + K + + +    +K+ I
Sbjct: 876  VMKMDGMTIKENVIKVAI 893

---

>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (Eif3p42) (eIF3g)
          Length = 320

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +1

Query: 22  ITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKYNN 198
           +TNL       DL+ELF   G + R  +  D+ +G+SKG A + F RR DA  AI   + 
Sbjct: 243 VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 302

Query: 199 VQLDGKPMKIE 231
              D   + +E
Sbjct: 303 FGYDHLILNVE 313

---

>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4|
           (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
           (eIF3 p42) (eIF3g)
          Length = 320

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +1

Query: 22  ITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKYNN 198
           +TNL       DL+ELF   G + R  +  D+ +G+SKG A + F RR DA  AI   + 
Sbjct: 243 VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSG 302

Query: 199 VQLDGKPMKIE 231
              D   + +E
Sbjct: 303 FGYDHLILNVE 313

---

>NUCL_MOUSE (P09405) Nucleolin (Protein C23)|
          Length = 706

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 19/71 (26%), Positives = 39/71 (54%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L   NL F ++ ++LKE+F +  +++  S    + G+SKG A + F    DA   +++  
Sbjct: 396 LLAKNLSFNITEDELKEVFEDAMEIRLVS----QDGKSKGIAYIEFKSEADAEKNLEEKQ 451

Query: 196 NVQLDGKPMKI 228
             ++DG+ + +
Sbjct: 452 GAEIDGRSVSL 462



 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           LF+  L    + E LKE F   G ++   +    +G SKG   V F    DA AA +   
Sbjct: 570 LFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 627

Query: 196 NVQLDGKPMKIE 231
           + ++DG  + ++
Sbjct: 628 DGEIDGNKVTLD 639

---

>NUCL_HUMAN (P19338) Nucleolin (Protein C23)|
          Length = 709

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 19/71 (26%), Positives = 38/71 (53%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L   NL + V+ ++LKE+F +  +++  S    + G+SKG A + F    DA    ++  
Sbjct: 394 LLAKNLPYKVTQDELKEVFEDAAEIRLVS----KDGKSKGIAYIEFKTEADAEKTFEEKQ 449

Query: 196 NVQLDGKPMKI 228
             ++DG+ + +
Sbjct: 450 GTEIDGRSISL 460



 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           LF+  L    + E LKE F   G ++   +    +G SKG   V F    DA AA +   
Sbjct: 573 LFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 630

Query: 196 NVQLDGKPMKIE 231
           + ++DG  + ++
Sbjct: 631 DGEIDGNKVTLD 642

---

>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1|
          Length = 833

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +1

Query: 10  EELFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIK 186
           + LF+ NL +  + +DLK LF   G L++  +  D ++   KG A + F    DAV A  
Sbjct: 323 KRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAY- 381

Query: 187 KYNNVQLDGKPMK 225
               ++LD KP +
Sbjct: 382 ----LELDAKPFQ 390



 Score = 32.0 bits (71), Expect = 1.4
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSEL----GDLKRCSINFDRSGR--SKGTAEVIFARRGDAVA 177
           +++ NL+F    E+ +++F  L      + R   +  R G+  S G   V F  +  AVA
Sbjct: 621 IYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVA 680

Query: 178 AIKKYNNVQLDGKPMKIEI 234
           A+   N   LDG  ++I++
Sbjct: 681 AMHAMNGFVLDGHKLEIKL 699

---

>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (CArG-binding factor-A) (CBF-A)
          Length = 285

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKK 189
           ++F+  L +  S +DLK+ F++ G++  C+I  D  +GRS+G   ++F +   +V  +  
Sbjct: 76  KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF-KDSSSVEKVLD 134

Query: 190 YNNVQLDGK 216
               +LDG+
Sbjct: 135 QKEHRLDGR 143

---

>NUCL_MACFA (Q4R4J7) Nucleolin|
          Length = 710

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 19/71 (26%), Positives = 38/71 (53%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L   NL + V+ ++LKE+F +  +++  S    + G+SKG A + F    DA    ++  
Sbjct: 395 LLAKNLPYKVTQDELKEVFEDAAEIRLVS----KDGKSKGIAYIEFKTEADAEKTFEEKQ 450

Query: 196 NVQLDGKPMKI 228
             ++DG+ + +
Sbjct: 451 GTEIDGRSISL 461



 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           LF+  L    + E LKE F   G ++   +    +G SKG   V F    DA AA +   
Sbjct: 574 LFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 631

Query: 196 NVQLDGKPMKIE 231
           + ++DG  + ++
Sbjct: 632 DGEIDGNKVTLD 643

---

>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 19/72 (26%), Positives = 41/72 (56%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           LF+ NL + V+ +++K +F    +++   +  ++ G SKG A + F    +A  A+++  
Sbjct: 373 LFVKNLPYRVTEDEMKNVFENALEVR---LVLNKEGSSKGMAYIEFKTEAEAEKALEEKQ 429

Query: 196 NVQLDGKPMKIE 231
             ++DG+ M I+
Sbjct: 430 GTEVDGRAMVID 441



 Score = 29.3 bits (64), Expect = 9.0
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           LF+  L    + E L+E F   G +    +    +G SKG   V F+   DA AA +   
Sbjct: 555 LFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAME 612

Query: 196 NVQLDGKPMKIE 231
           + ++DG  + ++
Sbjct: 613 DGEIDGNKVTLD 624

---

>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP)
          Length = 172

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           +LF+  L F  + + L+++FS+ G +    +  DR + RS+G   V F    DA  A+  
Sbjct: 7   KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 190 YNNVQLDGKPMKIE 231
            N   +DG+ ++++
Sbjct: 67  MNGKSVDGRQIRVD 80

---

>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           +LF+  L F  + + L+++FS+ G +    +  DR + RS+G   V F    DA  A+  
Sbjct: 7   KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 190 YNNVQLDGKPMKIE 231
            N   +DG+ ++++
Sbjct: 67  MNGKSVDGRQIRVD 80

---

>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3|
            (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa)
            (Tip110)
          Length = 963

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 21/78 (26%), Positives = 40/78 (51%)
 Frame = +1

Query: 1    IRHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAA 180
            +   +LFI+ L F  + E+L+E+    G +K   +  +R+G+ KG A V +     A  A
Sbjct: 798  LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQA 857

Query: 181  IKKYNNVQLDGKPMKIEI 234
            + K + + +    +K+ I
Sbjct: 858  VMKMDGMTIKENIIKVAI 875

---

>NUCL_MESAU (P08199) Nucleolin (Protein C23)|
          Length = 713

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 19/71 (26%), Positives = 39/71 (54%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L   NL F ++ ++LKE+F +  +++  S    + G+SKG A + F    DA   +++  
Sbjct: 395 LLAKNLSFNITEDELKEVFEDALEIRLVS----QDGKSKGIAYIEFKSEADAEKNLEEKQ 450

Query: 196 NVQLDGKPMKI 228
             ++DG+ + +
Sbjct: 451 GAEIDGRSVSL 461



 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           LF+  L    + E LKE F   G ++   +    +G SKG   V F    DA AA +   
Sbjct: 573 LFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 630

Query: 196 NVQLDGKPMKIE 231
           + ++DG  + ++
Sbjct: 631 DGEIDGNKVTLD 642

---

>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)|
          Length = 233

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           +++ NL + V T  L++LFSE G +    +  DR +GRS+G   V  +   +   AI   
Sbjct: 151 VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAAL 210

Query: 193 NNVQLDGKPMKIEI 234
           +   LDG+ +++ +
Sbjct: 211 DGQTLDGRAVRVNV 224



 Score = 35.4 bits (80), Expect = 0.13
 Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           +LF+ NL + V +E L  +F   G ++   + ++R + RS+G   V  +   +A  A++ 
Sbjct: 56  KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115

Query: 190 YNNVQLDGKPMKI 228
            N   +DG+ + +
Sbjct: 116 LNGYDMDGRQLTV 128

---

>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRS-GRSKGTAEVIFARRGDAVAAIKKY 192
           L + NL +  + + L+E+F      K  SI   ++ GR+KG A + F+   DA  A+   
Sbjct: 416 LVVNNLSYSATEDSLREVFE-----KATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSC 470

Query: 193 NNVQLDGKPMKIE 231
           NN +++G+ +++E
Sbjct: 471 NNTEIEGRSIRLE 483



 Score = 39.7 bits (91), Expect = 0.007
 Identities = 18/72 (25%), Positives = 41/72 (56%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           LF+ N+ +  + E+L+E+F    D++   I   + G +KG A V F+   +A  A+++  
Sbjct: 326 LFVKNIPYSTTVEELQEIFENAKDIR---IPTGKDGSNKGIAYVEFSNEDEANKALEEKQ 382

Query: 196 NVQLDGKPMKIE 231
             +++G+ + ++
Sbjct: 383 GAEIEGRSIFVD 394



 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           LF+  L    + E LKE F   G +    +    +G SKG   V F+   DA AA +   
Sbjct: 504 LFVRGLSEDTTEETLKEAFD--GSVNARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAME 561

Query: 196 NVQLDGKPMKIE 231
           + ++DG  + ++
Sbjct: 562 DGEIDGNKVTLD 573

---

>SAP49_SCHPO (O14102) Spliceosome-associated protein 49|
          Length = 335

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDL-KRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+ NLD  V    L + FS LG L K   +  D +GRSKG   V +     A AAI+  
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160

Query: 193 NNVQLDGKPMKI 228
           NN  L  KP+ +
Sbjct: 161 NNQFLMNKPITV 172

---

>NUCL_PONPY (Q5RF26) Nucleolin|
          Length = 711

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 19/71 (26%), Positives = 38/71 (53%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L   NL + V+ ++LKE+F +  +++  S    + G+SKG A + F    DA    ++  
Sbjct: 396 LLAKNLPYKVTQDELKEVFEDAAEIRLVS----KDGKSKGIAYIEFKTEADAEKTFEEKQ 451

Query: 196 NVQLDGKPMKI 228
             ++DG+ + +
Sbjct: 452 GTEIDGRSISL 462



 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           LF+  L    + E LKE F   G ++   +    +G SKG   V F    DA AA +   
Sbjct: 575 LFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 632

Query: 196 NVQLDGKPMKIE 231
           + ++DG  + ++
Sbjct: 633 DGEIDGNKVTLD 644

---

>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           ++FI  L +  + +DLK+ FS+ G++  C++  D  +GRS+G   V+F +  ++V  +  
Sbjct: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVMD 156

Query: 190 YNNVQLDGK 216
               +L+GK
Sbjct: 157 QKEHKLNGK 165

---

>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)|
           (AU-rich element RNA-binding protein 1)
          Length = 355

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           ++FI  L +  + +DLK+ FS+ G++  C++  D  +GRS+G   V+F +  ++V  +  
Sbjct: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF-KESESVDKVMD 156

Query: 190 YNNVQLDGK 216
               +L+GK
Sbjct: 157 QKEHKLNGK 165

---

>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic|
           region
          Length = 403

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSI-NFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+ NL F V+ + L++ F   GD+ +  +  F+ SG+ KG A + F     +   +K  
Sbjct: 241 LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDK 300

Query: 193 NNVQLDGKPMKIE 231
           +  ++ G+P+++E
Sbjct: 301 SCRKIAGRPLRME 313

---

>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein|
          Length = 157

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +1

Query: 19  FITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKYN 195
           F+  L +  S E L+  F+  G++    +  DR +GRS+G   V F+     + AI+  N
Sbjct: 11  FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70

Query: 196 NVQLDGKPMKI 228
             +LDG+ + +
Sbjct: 71  GKELDGRNITV 81

---

>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein|
           1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B)
           (PABP 1-B) (xPABP1-B)
          Length = 633

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 21/73 (28%), Positives = 38/73 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L++ NLD G+  E L++ F+  G +    +  +  GRSKG   V F+   +A  A+ + N
Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMN 354

Query: 196 NVQLDGKPMKIEI 234
              +  KP+ + +
Sbjct: 355 GRIVATKPLYVAL 367



 Score = 38.1 bits (87), Expect = 0.019
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           ++I N    +  E LKE F + G      +  D  G+S+G   V F R  DA  A+   N
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMN 252

Query: 196 NVQLDGK 216
              L+GK
Sbjct: 253 GKDLNGK 259



 Score = 38.1 bits (87), Expect = 0.019
 Identities = 23/67 (34%), Positives = 35/67 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NLD  +  + L + FS  G++  C +  D +G SKG   V F  +  A  AI K N
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMN 159

Query: 196 NVQLDGK 216
            + L+ +
Sbjct: 160 GMLLNDR 166

---

>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic|
           poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B)
          Length = 629

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 19/67 (28%), Positives = 35/67 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           ++I N    +  + LKE+FS  G+     +  D SGRS+G   V +    +A  A+ + N
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMN 252

Query: 196 NVQLDGK 216
             +++G+
Sbjct: 253 GKEVNGR 259



 Score = 36.6 bits (83), Expect = 0.056
 Identities = 20/73 (27%), Positives = 36/73 (49%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L++ NLD G+  + L++ FS  G +    +     G SKG   V F+   +A  A+ + N
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354

Query: 196 NVQLDGKPMKIEI 234
              +  KP+ + +
Sbjct: 355 GRIVSTKPLYVAL 367



 Score = 35.4 bits (80), Expect = 0.13
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NLD  +  + L + FS  GD+  C +  D  G S+G   V F  +  A  AI+  N
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMN 159

Query: 196 NVQLDGK 216
            + L+ +
Sbjct: 160 GMLLNDR 166

---

>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)|
          Length = 429

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 21/60 (35%), Positives = 32/60 (53%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+ NL +  + EDL E FS++G + R  I   R G  +G   V F    D   AI++Y+
Sbjct: 138 IFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR-GHHRGMGTVEFTNSDDVDRAIRQYD 196

---

>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)|
           (APOBEC-1-binding protein 1) (ABBP-1)
          Length = 331

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKK 189
           ++F+  L +  S +DLK+ F++ G++  C+I  D  +GRS+G   ++F +   +V  +  
Sbjct: 69  KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF-KDAASVEKVLD 127

Query: 190 YNNVQLDGK 216
               +LDG+
Sbjct: 128 QKEHRLDGR 136

---

>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1|
          Length = 828

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+ NL +    ED ++LFS+ G+L+   +  + ++G+ KG A V F    +A+AA +  
Sbjct: 303 LFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEAQ 362

Query: 193 NNVQLDGKPMKI 228
           +     G+ + I
Sbjct: 363 DGKIFQGRLLHI 374



 Score = 29.6 bits (65), Expect = 6.9
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGT-AEVIFARRGDAVAAIKK 189
           + + N  FG +  ++ E+FSE GDL +  +         GT A VIF    DA AA  K
Sbjct: 487 ILVKNFPFGTTQPEIAEMFSEYGDLYKVMM------PPAGTIAIVIFKHIPDARAAFAK 539

---

>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           +LF+  L F  + + L+++FS+ G +    +  DR + RS+G   V F    DA  A+  
Sbjct: 7   KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 190 YNNVQLDGKPMKIE 231
            N   +DG+ ++++
Sbjct: 67  MNGKSVDGRQIRVD 80

---

>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           +LF+  L F  + + L+++FS+ G +    +  DR + RS+G   V F    DA  A+  
Sbjct: 7   KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 190 YNNVQLDGKPMKIE 231
            N   +DG+ ++++
Sbjct: 67  MNGKSVDGRQIRVD 80

---

>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (A18 hnRNP)
          Length = 172

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           +LF+  L F  + + L+++FS+ G +    +  DR + RS+G   V F    DA  A+  
Sbjct: 7   KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 190 YNNVQLDGKPMKIE 231
            N   +DG+ ++++
Sbjct: 67  MNGKSVDGRQIRVD 80

---

>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)|
          Length = 276

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           +++ N+ + +    L+++FSE G +    + FDR SGRS+G   V  +   +   AI   
Sbjct: 193 IYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANL 252

Query: 193 NNVQLDGKPMKI 228
           +   LDG+ +++
Sbjct: 253 DGQTLDGRTIRV 264



 Score = 37.4 bits (85), Expect = 0.033
 Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           +LF+ NL + + +E L +LF + G ++   + ++R + RS+G   V  +   +A  A++ 
Sbjct: 98  KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157

Query: 190 YNNVQLDGKPMKI 228
           Y+   L+G+ + +
Sbjct: 158 YSQYDLNGRLLTV 170

---

>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein|
          Length = 157

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +1

Query: 19  FITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKYN 195
           F+  L +  + E L++ FS+ GD+    I  DR +GRS+G   V F        AI+  N
Sbjct: 9   FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68

Query: 196 NVQLDGKPMKI 228
             +LDG+ + +
Sbjct: 69  GQELDGRNITV 79

---

>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3|
            (SART-3) (mSART-3) (Tumor-rejection antigen SART3)
          Length = 962

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 20/78 (25%), Positives = 40/78 (51%)
 Frame = +1

Query: 1    IRHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAA 180
            +   +LFI+ L F  + E+L+++    G +K   +  +R+G+ KG A V +     A  A
Sbjct: 798  LEKHKLFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQA 857

Query: 181  IKKYNNVQLDGKPMKIEI 234
            + K + + +    +K+ I
Sbjct: 858  VMKMDGMTIRENVIKVAI 875

---

>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein|
           23) (RNA-binding region-containing protein 4) (Splicing
           factor SF2)
          Length = 439

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           L++ +L F ++ + L+ +F   G +    +  D  +GRSKG   + F+    A  A+++ 
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324

Query: 193 NNVQLDGKPMKI 228
           N  +L G+PM++
Sbjct: 325 NGFELAGRPMRV 336

---

>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome) (Glycoprotein
           p43)
          Length = 391

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +1

Query: 4   RHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAA 180
           R  +LFI  L+   + + L+ +F + G +    +  DR + +S+G A V F    DA  A
Sbjct: 6   RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65

Query: 181 IKKYNNVQLDGKPMKIE 231
            +  N   LDGK +K+E
Sbjct: 66  ARDMNGKSLDGKAIKVE 82

---

>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)|
          Length = 685

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 20/73 (27%), Positives = 36/73 (49%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           LF+ ++   V+ E L + FS    +K   +  D + RS+G   V FA   D   A+ K  
Sbjct: 28  LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALAKAR 87

Query: 196 NVQLDGKPMKIEI 234
             + +G  ++++I
Sbjct: 88  KTKFNGHILRVDI 100

---

>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 19/73 (26%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           +LF+ NL + V+++ L  LF + G ++   + ++R + +S+G   V  +   +A  A++K
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210

Query: 190 YNNVQLDGKPMKI 228
           +N   L+G+ + +
Sbjct: 211 FNRYDLNGRLLTV 223



 Score = 36.6 bits (83), Expect = 0.056
 Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           +++ NL + V    L++LFSE G +    + +DR +GRS+G   V  +   +   AI   
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305

Query: 193 NNVQLDGKPMKIEI 234
           +   L+G+ +++ +
Sbjct: 306 DGQNLEGRAIRVNV 319

---

>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic|
           poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A)
          Length = 629

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           ++I N    +  + L+E+FS  G+     +  D SGRS+G   V +    +A  A+ + N
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMN 252

Query: 196 NVQLDGK 216
             +++G+
Sbjct: 253 GKEVNGR 259



 Score = 34.7 bits (78), Expect = 0.21
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L++ NLD G+  + L++ F   G +    +     G SKG   V F+   +A  A+ + N
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354

Query: 196 NVQLDGKPMKIEI 234
              +  KP+ + +
Sbjct: 355 GRIVSTKPLYVAL 367



 Score = 33.5 bits (75), Expect = 0.48
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NLD  +  + L + FS  G++  C +  D  G S+G   V F     A  AI+  N
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMN 159

Query: 196 NVQLDGK 216
            + L+ +
Sbjct: 160 GMLLNDR 166

---

>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (U2AF65)
          Length = 496

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 23/74 (31%), Positives = 36/74 (48%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           ++FI  L   ++ + +KEL    G LK  S+N D  G SKG A   +        AI   
Sbjct: 292 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 351

Query: 193 NNVQLDGKPMKIEI 234
           N +QL  K + +++
Sbjct: 352 NGMQLGDKQLVVQL 365

---

>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding
           protein) (EDEN-BP)
          Length = 486

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 21/68 (30%), Positives = 32/68 (47%)
 Frame = +1

Query: 1   IRHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAA 180
           +   +LFI  +    +  D++ +FS  G ++ C I     G S+G A V F  R  A  A
Sbjct: 105 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTA 164

Query: 181 IKKYNNVQ 204
           IK  +  Q
Sbjct: 165 IKAMHQAQ 172



 Score = 29.6 bits (65), Expect = 6.9
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRS---GRSKGTAEVIFARRGDAVAAI 183
           ++F+  +    S +DL+ELF + G +   ++  DRS    +SKG   V F  R  A+ A 
Sbjct: 17  KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76

Query: 184 KKYNNVQL 207
              +N+++
Sbjct: 77  NALHNMKV 84

---

>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (U2AF65)
          Length = 488

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 23/74 (31%), Positives = 36/74 (48%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           ++FI  L   ++ + +KEL    G LK  S+N D  G SKG A   +        AI   
Sbjct: 283 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 342

Query: 193 NNVQLDGKPMKIEI 234
           N +QL  K + +++
Sbjct: 343 NGMQLGDKQLVVQL 356

---

>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)|
          Length = 633

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 25/71 (35%), Positives = 39/71 (54%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           LF+ NL   V+ E L++ FSE G L+R         + K  A V F  RG AV A+ + N
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVK-------KLKDYAFVHFEDRGAAVKAMDEMN 395

Query: 196 NVQLDGKPMKI 228
             +++G+ ++I
Sbjct: 396 GKEIEGEEIEI 406

---

>RNP24_SCHPO (Q09100) RNA-binding protein rnp24|
          Length = 369

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSI-NFDRSGRSKGTAEVIF 153
           LF+ NLDF  +  DLKE F ++G ++R  +  F+ +G+ KG   V F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276

---

>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3) (RNPL)
          Length = 157

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           +LF+  L+F    + L++ FS  G +    +  DR + RS+G   + F     A  A++ 
Sbjct: 7   KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66

Query: 190 YNNVQLDGKPMKIE 231
            N   LDG+ ++++
Sbjct: 67  MNGESLDGRQIRVD 80

---

>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4|
           (RNA-binding protein srp-2) (CeSC35)
          Length = 196

 Score = 37.4 bits (85), Expect = 0.033
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGR-SKGTAEVIFARRGDAVAAIKKY 192
           L I NL +  +  DL+  F   GD+    I  D+  R SKG   V F  R DA  A+ + 
Sbjct: 21  LKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRT 80

Query: 193 NNVQLDGKPMKIEI 234
           +   +DG+ +++ +
Sbjct: 81  DGKLVDGRELRVTL 94

---

>TRA2_DROME (P19018) Transformer-2 sex-determining protein|
          Length = 264

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 18/71 (25%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
 Frame = +1

Query: 22  ITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKYNN 198
           +  L+   S   ++ELF++ G ++R  +  D ++ RS+G   + F +  DA AA    + 
Sbjct: 101 VFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSG 160

Query: 199 VQLDGKPMKIE 231
           +++DG+ ++++
Sbjct: 161 IEVDGRRIRVD 171

---

>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)|
           binding protein) (ePABP)
          Length = 629

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 20/73 (27%), Positives = 36/73 (49%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L++ NLD G+  + L++ FS  G +    +     G SKG   V F+   +A  A+ + N
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKV-MTEGGHSKGFGFVCFSSPEEATKAVTEMN 354

Query: 196 NVQLDGKPMKIEI 234
              +  KP+ + +
Sbjct: 355 GRIVSTKPLYVAL 367



 Score = 36.6 bits (83), Expect = 0.056
 Identities = 17/67 (25%), Positives = 35/67 (52%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           ++I N    +  + L+E+FS  G+     +  D +GRS+G   V +    +A  A+ + N
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMN 252

Query: 196 NVQLDGK 216
             +++G+
Sbjct: 253 GKEVNGR 259



 Score = 33.9 bits (76), Expect = 0.36
 Identities = 21/67 (31%), Positives = 34/67 (50%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +FI NLD  +  + L + FS  G++  C +  D  G S+G   V F  +  A  AI+  N
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMN 159

Query: 196 NVQLDGK 216
            + L+ +
Sbjct: 160 GMLLNDR 166

---

>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4)
          Length = 492

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+  L+   + EDL+ +FS  G ++ C +  D ++G S   A + F +  D   A  K 
Sbjct: 242 LFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKM 301

Query: 193 NNVQLDGKPMKIE 231
           +NV +D + + ++
Sbjct: 302 DNVLIDDRRIHVD 314

---

>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4)
          Length = 492

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+  L+   + EDL+ +FS  G ++ C +  D ++G S   A + F +  D   A  K 
Sbjct: 242 LFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKM 301

Query: 193 NNVQLDGKPMKIE 231
           +NV +D + + ++
Sbjct: 302 DNVLIDDRRIHVD 314

---

>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           +F+  L + +  E LK+ F  +G +    + ++R + RS+G   V F  +  A  AI++ 
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229

Query: 193 NNVQLDGKPMKIEI 234
              ++DG+P+  ++
Sbjct: 230 QGKEIDGRPINCDM 243



 Score = 33.5 bits (75), Expect = 0.48
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +1

Query: 10  EELFITNLDFGVSTEDLKELFSELGDLKRCSI-NFDRSGRSKGTAEVIFARRGDAVAAIK 186
           + LF+ NL F    + + ELF++ G++    I     + + KG   V F+   DA  A+ 
Sbjct: 267 DTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALD 326

Query: 187 KYNNVQLDGKPMKIE 231
                 +D +P++++
Sbjct: 327 ALQGEYIDNRPVRLD 341

---

>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +1

Query: 4   RHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAA 180
           R  +LFI  L+   + + L+ +F + G +    +  DR + +S+G A V F    DA   
Sbjct: 6   RPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDV 65

Query: 181 IKKYNNVQLDGKPMKIE 231
            +  N   LDGK +K+E
Sbjct: 66  ARDMNGKSLDGKAIKVE 82

---

>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 427

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
 Frame = +1

Query: 7   HEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAI 183
           ++ LF++ L++  S   +K  F   G +KR  +  D+ + + KG A + +    D  AA 
Sbjct: 137 YKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAY 196

Query: 184 KKYNNVQLDGKPMKIEI 234
           K+ +  ++DG+ + +++
Sbjct: 197 KQADGQKIDGRRVLVDV 213

---

>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3)
          Length = 153

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           +LF+  L+F    + L++ FS  G +    +  DR + RS+G   + F     A  A++ 
Sbjct: 7   KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66

Query: 190 YNNVQLDGKPMKIE 231
            N   LDG+ ++++
Sbjct: 67  MNGESLDGRQIRVD 80

---

>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein
           F41)
          Length = 486

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 21/68 (30%), Positives = 32/68 (47%)
 Frame = +1

Query: 1   IRHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAA 180
           +   +LFI  +    +  D++ +FS  G ++ C I     G S+G A V F  R  A  A
Sbjct: 105 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTA 164

Query: 181 IKKYNNVQ 204
           IK  +  Q
Sbjct: 165 IKAMHQAQ 172



 Score = 30.0 bits (66), Expect = 5.3
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRS---GRSKGTAEVIFARRGDAVAAI 183
           ++F+  +    S +DL+ELF + G +   +I  DRS    +SKG   V F  R  A+ A 
Sbjct: 17  KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76

Query: 184 KKYNNVQL 207
              +N+++
Sbjct: 77  NALHNMKV 84

---

>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           +++  LD  VS   L ELF + G +    +  DR +G+ +G   V F    DA  AIK  
Sbjct: 15  VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74

Query: 193 NNVQLDGKPMKI 228
           N ++L GKP+++
Sbjct: 75  NMIKLYGKPIRV 86



 Score = 29.3 bits (64), Expect = 9.0
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCS--INFDRSGRSKGTAEVIFARRGDAVAAIKK 189
           +FI NLD  +  + L + FS  G + +    +    +G SKG A + FA    + AAI+ 
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161

Query: 190 YNNVQLDGKPMKI 228
            N   L  +P+ +
Sbjct: 162 MNGQYLCNRPITV 174

---

>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2|
          Length = 168

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +1

Query: 19  FITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKYN 195
           F+  L +  + E L++ F+  G +    +  DR +GRS+G   V F+     + AI+  N
Sbjct: 11  FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70

Query: 196 NVQLDGKPMKI 228
             +LDG+ + +
Sbjct: 71  GKELDGRNITV 81

---

>RNP4F_DROME (Q9W4D2) RNA-binding protein 4F|
          Length = 941

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           ++F+ NL    S E+L ELFS  G +K   +    + + KG A V F + G+A  A+   
Sbjct: 725 KIFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQFKGIAYVEFEKPGEAQRAVAGR 784

Query: 193 NNVQLDGKPMKIEI 234
           +     G  + + I
Sbjct: 785 DGCLFKGMNISVAI 798

---

>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)|
          Length = 611

 Score = 36.6 bits (83), Expect = 0.056
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGT-AEVIFARRGDAVAAIKKY 192
           +FI NL    + +D+   FSE+G +K  SI    + + K   A V +    D+  AIK+Y
Sbjct: 305 IFIKNLPTITTRDDILNFFSEVGPIK--SIYLSNATKVKYLWAFVTYKNSSDSEKAIKRY 362

Query: 193 NNVQLDGKPMKI 228
           NN    GK + +
Sbjct: 363 NNFYFRGKKLLV 374

---

>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 36.2 bits (82), Expect = 0.073
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +1

Query: 4   RHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAA 180
           R  +LFI  L+   + + L+ +F + G +    +  DR + +S+G A V      DA  A
Sbjct: 6   RPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDA 65

Query: 181 IKKYNNVQLDGKPMKIE 231
            +  N   LDGK +K+E
Sbjct: 66  ARDMNGKSLDGKAIKVE 82

---

>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich|
           RNA-binding protein CIRP) (xCIRP)
          Length = 163

 Score = 36.2 bits (82), Expect = 0.073
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           +LFI  L+F  + + L++ F++ G +    +  DR + RS+G   V F    DA  A+  
Sbjct: 6   KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65

Query: 190 YNNVQLDGKPMKIE 231
            N   +DG+ ++++
Sbjct: 66  MNGKSVDGRQIRVD 79

---

>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit)
          Length = 699

 Score = 35.8 bits (81), Expect = 0.096
 Identities = 22/58 (37%), Positives = 31/58 (53%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKK 189
           L + NL   VS E L+E FS+ G ++R  +  D  GRS G   V FA +  A  A ++
Sbjct: 365 LSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFER 422

---

>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa
           DNA-pairing protein) (hPOMp
          Length = 707

 Score = 35.8 bits (81), Expect = 0.096
 Identities = 22/58 (37%), Positives = 31/58 (53%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKK 189
           L + NL   VS E L+E FS+ G ++R  +  D  GRS G   V FA +  A  A ++
Sbjct: 373 LSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKPAARKAFER 430

---

>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)|
           (CeSF2/ASF)
          Length = 258

 Score = 35.8 bits (81), Expect = 0.096
 Identities = 19/74 (25%), Positives = 41/74 (55%)
 Frame = +1

Query: 10  EELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKK 189
           +++++ NL   V  ++++++F + G +K   I   +SGR    A V F    DA  A++ 
Sbjct: 9   QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI---KSGRGPAFAFVEFEDHRDAEDAVRA 65

Query: 190 YNNVQLDGKPMKIE 231
            +  + DG+ +++E
Sbjct: 66  RDGYEFDGRRIRVE 79

---

>HNRH3_HUMAN (P31942) Heterogeneous nuclear ribonucleoprotein H3 (hnRNP H3)|
           (hnRNP 2H9)
          Length = 346

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 31  LDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKK-YNNVQ 204
           L F  +  D+   FS L  + R  I+    GR+ G A+V F    DAVAA+ K  NN+Q
Sbjct: 202 LPFRATENDIANFFSPLNPI-RVHIDIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQ 259

---

>LARK_DROME (Q94901) RNA-binding protein lark|
          Length = 352

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 21/74 (28%), Positives = 38/74 (51%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           ++F+ NL       +++ELF + G +  C I      R+ G   +     GD   AIK+ 
Sbjct: 87  KIFVGNLTDKTRAPEVRELFQKYGTVVECDIV-----RNYGFVHLDCV--GDVQDAIKEL 139

Query: 193 NNVQLDGKPMKIEI 234
           N   +DG+P+K+++
Sbjct: 140 NGRVVDGQPLKVQV 153

---

>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 471

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 17/74 (22%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+  +++  +   L+  F   G +KR  + ++ RSG+ +G A + +    D  +A K  
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHA 164

Query: 193 NNVQLDGKPMKIEI 234
           +  ++DG+ + +++
Sbjct: 165 DGKKIDGRRVLVDV 178

---

>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSIN-FDRSGRSKGTAEVIFARRGDAVAAIKK 189
           +++I NL   V+ E LK+ FSE G +    +     + +S G   V F+   +  AAI+ 
Sbjct: 185 KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQA 244

Query: 190 YNNVQLDGKPMKI 228
            NN  L+G+ +++
Sbjct: 245 LNNSVLEGQKIRV 257

---

>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 373

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +1

Query: 1   IRHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVA 177
           IR   L+++ L   ++ ++L++LFS+ G +    I  D+ +G S+G   + F +R +A  
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 181

Query: 178 AIKKYNNVQLDGKPMKIEI 234
           AIK  N  +  G    I +
Sbjct: 182 AIKGLNGQKPSGATEPITV 200

---

>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 385

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +1

Query: 1   IRHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVA 177
           IR   L+++ L   ++ ++L++LFS+ G +    I  D+ +G S+G   + F +R +A  
Sbjct: 134 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 193

Query: 178 AIKKYNNVQLDGKPMKIEI 234
           AIK  N  +  G    I +
Sbjct: 194 AIKGLNGQKPSGATEPITV 212

---

>TRA2_DROVI (O02008) Transformer-2 sex-determining protein|
          Length = 272

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
 Frame = +1

Query: 37  FGVST----EDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKYNNV 201
           FG++T    + ++ELF++ G ++R  +  D  + RS+G   + F   GDA  A      +
Sbjct: 110 FGLNTNTTQQKVRELFNKFGPIERIQMVIDAHTHRSRGFCFIYFENLGDARVAKDACTGM 169

Query: 202 QLDGKPMKIE 231
           ++DG+ ++++
Sbjct: 170 EVDGRRIRVD 179

---

>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis|
           antigen HuD) (Hu-antigen D)
          Length = 380

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +1

Query: 1   IRHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVA 177
           IR   L+++ L   ++ ++L++LFS+ G +    I  D+ +G S+G   + F +R +A  
Sbjct: 129 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 188

Query: 178 AIKKYNNVQLDGKPMKIEI 234
           AIK  N  +  G    I +
Sbjct: 189 AIKGLNGQKPSGATEPITV 207

---

>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
 Frame = +1

Query: 10  EELFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIK 186
           + +F+ NL F  + +DL   F   GD++   +  D +SGR KG   V F+    A   + 
Sbjct: 366 DTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV- 424

Query: 187 KYNNVQLDGKPMKIE 231
           + N   + G+P +++
Sbjct: 425 EMNGHFIAGRPCRLD 439



 Score = 34.3 bits (77), Expect = 0.28
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           +F+  L + V  + L + F E G +    +  D +SGRSKG   V F     A AA+   
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324

Query: 193 NNVQLDGKPMKIEI 234
              ++DG+ + +++
Sbjct: 325 GTKEIDGRMVNLDL 338

---

>RU2B_MOUSE (Q9CQI7) U2 small nuclear ribonucleoprotein B"|
          Length = 225

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKE----LFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAI 183
           ++I N++  +  E+LK     LFS+ G +    I   ++ + +G A VIF   G +  A+
Sbjct: 9   IYINNMNDKIKKEELKRSLYALFSQFGHV--VDIVALKTMKMRGQAFVIFKELGSSTNAL 66

Query: 184 KKYNNVQLDGKPMKIE 231
           ++       GKPM+I+
Sbjct: 67  RQLQGFPFYGKPMRIQ 82

---

>RU2B_HUMAN (P08579) U2 small nuclear ribonucleoprotein B"|
          Length = 225

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKE----LFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAI 183
           ++I N++  +  E+LK     LFS+ G +    I   ++ + +G A VIF   G +  A+
Sbjct: 9   IYINNMNDKIKKEELKRSLYALFSQFGHV--VDIVALKTMKMRGQAFVIFKELGSSTNAL 66

Query: 184 KKYNNVQLDGKPMKIE 231
           ++       GKPM+I+
Sbjct: 67  RQLQGFPFYGKPMRIQ 82

---

>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)|
          Length = 386

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L++ NL   V+   + +LFS++G  K C +  D +G       V F     A AA+   N
Sbjct: 9   LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67

Query: 196 NVQLDGKPMKI 228
             ++ GK +K+
Sbjct: 68  GRKIMGKEVKV 78

---

>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)|
           (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15
           (p15-TIA-1)]
          Length = 386

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L++ NL   V+   + +LFS++G  K C +  D +G       V F     A AA+   N
Sbjct: 9   LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67

Query: 196 NVQLDGKPMKI 228
             ++ GK +K+
Sbjct: 68  GRKIMGKEVKV 78

---

>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Mel-N1)
          Length = 360

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +1

Query: 1   IRHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVA 177
           IR   L+++ L   ++ ++L++LFS+ G +    I  D+ +G S+G   + F +R +A  
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181

Query: 178 AIKKYNNVQLDGKPMKIEI 234
           AIK  N  +  G    I +
Sbjct: 182 AIKGLNGQKPPGATEPITV 200

---

>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 758

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRS-KGTAEVIFARRGDAVAAIKK 189
           LF+  L     +E L+ELFS++G +K+C +  ++  ++ +G   V F+   D   A+K+
Sbjct: 5   LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 63

---

>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein|
           PUB1 (ARS consensus-binding protein ACBP-60)
           (Poly(U)-binding protein) (Poly uridylate-binding
           protein)
          Length = 452

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+ +L+  V  E L+  F +        + +D ++G S+G   V F  + DA  A+   
Sbjct: 163 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 222

Query: 193 NNVQLDGKPMKI 228
               L+G+P++I
Sbjct: 223 QGQDLNGRPLRI 234

---

>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 437

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+  +++  +   L+  F   G +KR  + +  RSG+ +G A + +    D  +A K  
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164

Query: 193 NNVQLDGKPMKIEI 234
           +  ++DG+ + +++
Sbjct: 165 DGKKIDGRRVLVDV 178

---

>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1)
          Length = 623

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 23/71 (32%), Positives = 38/71 (53%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           LF+ NL   V+ E L++ FS+ G L+R         + K  A + F  R  AV A+++ N
Sbjct: 340 LFVRNLANTVTEEILEKAFSQFGKLERVK-------KLKDYAFIHFDERDGAVKAMEEMN 392

Query: 196 NVQLDGKPMKI 228
              L+G+ ++I
Sbjct: 393 GKDLEGENIEI 403



 Score = 30.0 bits (66), Expect = 5.3
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           E+F+  +   +  ++L  LF + G +    +  D  +G ++G A V F  +  A  A+K 
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222

Query: 190 YNNVQL 207
           YNN ++
Sbjct: 223 YNNHEI 228

---

>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)|
          Length = 359

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +1

Query: 1   IRHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVA 177
           IR   L+++ L   ++ ++L++LFS+ G +    I  D+ +G S+G   + F +R +A  
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181

Query: 178 AIKKYNNVQLDGKPMKIEI 234
           AIK  N  +  G    I +
Sbjct: 182 AIKGLNGQKPPGATEPITV 200

---

>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2|
          Length = 359

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +1

Query: 1   IRHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVA 177
           IR   L+++ L   ++ ++L++LFS+ G +    I  D+ +G S+G   + F +R +A  
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181

Query: 178 AIKKYNNVQLDGKPMKIEI 234
           AIK  N  +  G    I +
Sbjct: 182 AIKGLNGQKPPGATEPITV 200

---

>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Hel-N1)
          Length = 359

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +1

Query: 1   IRHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVA 177
           IR   L+++ L   ++ ++L++LFS+ G +    I  D+ +G S+G   + F +R +A  
Sbjct: 122 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181

Query: 178 AIKKYNNVQLDGKPMKIEI 234
           AIK  N  +  G    I +
Sbjct: 182 AIKGLNGQKPPGATEPITV 200

---

>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70|
           kDa) (snRNP70)
          Length = 448

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+  +++  +   L+  F   G +KR  + +  RSG+ +G A + +    D  +A K  
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164

Query: 193 NNVQLDGKPMKIEI 234
           +  ++DG+ + +++
Sbjct: 165 DGKKIDGRRVLVDV 178

---

>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)|
          Length = 289

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 18/71 (25%), Positives = 36/71 (50%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+  +D  ++  +++  F + G +K   I  DR+G SKG   V F    D    ++  +
Sbjct: 38  VFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQKIVE--S 95

Query: 196 NVQLDGKPMKI 228
            + + GK +K+
Sbjct: 96  QISVHGKRLKL 106

---

>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Liver regeneration-related
           protein LRRG077)
          Length = 533

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 23/71 (32%), Positives = 38/71 (53%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           LF+ NL   V+ E L++ FS+ G L+R         + K  A + F  R  AV A+++ N
Sbjct: 250 LFVRNLANTVTEEILEKSFSQFGKLERVK-------KLKDYAFIHFDERDGAVKAMEEMN 302

Query: 196 NVQLDGKPMKI 228
              L+G+ ++I
Sbjct: 303 GKDLEGENIEI 313



 Score = 30.0 bits (66), Expect = 5.3
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           E+F+  +   +  ++L  LF + G +    +  D  +G ++G A V F  +  A  A+K 
Sbjct: 73  EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 132

Query: 190 YNNVQL 207
           YNN ++
Sbjct: 133 YNNHEI 138

---

>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 551

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+  L+    ++DL+ +FS  G +  C +  D ++G S   A + F ++ DA  A  K 
Sbjct: 264 LFVCKLNPVTRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDDAERAYFKM 323

Query: 193 NNVQLDGKPMKIE 231
            NV +D + + ++
Sbjct: 324 QNVLVDDRRIWVD 336

---

>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)|
          Length = 535

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 24/71 (33%), Positives = 35/71 (49%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L+I NL   V+ E+LKELFS  G++    IN +     K  A +    R +A  A K  +
Sbjct: 115 LYIGNLTSDVTEEELKELFSPYGEISEAFINAE-----KNFAFLKIDYRANAERAKKDLD 169

Query: 196 NVQLDGKPMKI 228
                 KP++I
Sbjct: 170 GRMRKNKPIRI 180

---

>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)|
          Length = 419

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 19/74 (25%), Positives = 36/74 (48%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           ++F+ NL    + E+++ LFS+ G +  C I        K    V    + +A  AI+  
Sbjct: 3   KIFVGNLSPNTTAEEIRSLFSQYGKISECDI-------VKNFGFVHMDSKSEADEAIQNL 55

Query: 193 NNVQLDGKPMKIEI 234
           ++  L+G  M +E+
Sbjct: 56  HHYMLNGMAMNVEM 69

---

>PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein|
          Length = 138

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 17/67 (25%), Positives = 37/67 (55%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L+I NL + ++TE++ E+F + G +++  I    +  ++GTA V++    DA  A +  +
Sbjct: 21  LYIKNLPYKITTEEMYEIFGKFGAVRQ--IRVGNTAETRGTAFVVYEDIFDAKTACEHLS 78

Query: 196 NVQLDGK 216
              +  +
Sbjct: 79  GYNVSNR 85

---

>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1) (pp68)
          Length = 623

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 23/71 (32%), Positives = 38/71 (53%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           LF+ NL   V+ E L++ FS+ G L+R         + K  A + F  R  AV A+++ N
Sbjct: 340 LFVRNLANTVTEEILEKSFSQFGKLERVK-------KLKDYAFIHFDERDGAVKAMEEMN 392

Query: 196 NVQLDGKPMKI 228
              L+G+ ++I
Sbjct: 393 GKDLEGENIEI 403



 Score = 30.0 bits (66), Expect = 5.3
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           E+F+  +   +  ++L  LF + G +    +  D  +G ++G A V F  +  A  A+K 
Sbjct: 163 EIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKL 222

Query: 190 YNNVQL 207
           YNN ++
Sbjct: 223 YNNHEI 228

---

>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10|
          Length = 169

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +1

Query: 19  FITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKYN 195
           F+  L +     +L+  FS+ G++    I  DR +GRS+G   V F        AI + N
Sbjct: 9   FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68

Query: 196 NVQLDGKPMKI 228
             +LDG+ + +
Sbjct: 69  GKELDGRTITV 79

---

>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           +++  LD  VS   L EL  + G +   ++  DR +   +G   V F    DA  AIK  
Sbjct: 15  IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74

Query: 193 NNVQLDGKPMKI 228
           N ++L GKP+K+
Sbjct: 75  NMIKLYGKPIKV 86

---

>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 22/73 (30%), Positives = 40/73 (54%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L++ NL    S E +++   E  ++K  ++  +R  + +  A V F+ R DAV A+K  N
Sbjct: 233 LYVRNLMLSTSEEMIEK---EFNNIKPGAV--ERVKKIRDYAFVHFSNREDAVEAMKALN 287

Query: 196 NVQLDGKPMKIEI 234
              LDG P+++ +
Sbjct: 288 GKVLDGSPIEVTL 300

---

>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 471

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR----SGRSKGTAEVIFARRGDAVAAI 183
           LF+  +++  +   L+  F   G +KR  I +++    SG+ +G A + +    D  +A 
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAY 164

Query: 184 KKYNNVQLDGKPMKIEI 234
           K  +  ++DG+ + +++
Sbjct: 165 KHADGKKIDGRRVLVDV 181

---

>SNRPA_HUMAN (P09012) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)|
           (U1A protein) (U1-A)
          Length = 281

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKE----LFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAI 183
           ++I NL+  +  ++LK+    +FS+ G +    I   RS + +G A VIF     A  A+
Sbjct: 11  IYINNLNEKIKKDELKKSLYAIFSQFGQI--LDILVSRSLKMRGQAFVIFKEVSSATNAL 68

Query: 184 KKYNNVQLDGKPMKIE 231
           +         KPM+I+
Sbjct: 69  RSMQGFPFYDKPMRIQ 84

---

>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A|
          Length = 169

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +1

Query: 19  FITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKYN 195
           F+  L +      L+  FS+ G+L    I  DR +GRS+G   V F        AI+  N
Sbjct: 11  FVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70

Query: 196 NVQLDGKPMKI 228
              LDG+ + +
Sbjct: 71  GQDLDGRSITV 81

---

>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 587

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 22/73 (30%), Positives = 40/73 (54%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L++ NL    S E +++   E  ++K  ++  +R  + +  A V F+ R DAV A+K  N
Sbjct: 233 LYVRNLMLSTSEEMIEK---EFNNIKPGAV--ERVKKIRDYAFVHFSNREDAVEAMKALN 287

Query: 196 NVQLDGKPMKIEI 234
              LDG P+++ +
Sbjct: 288 GKVLDGSPIEVTL 300

---

>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 595

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 22/73 (30%), Positives = 39/73 (53%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L++ NL    S E +++   E   +K  ++  +R  + +  A V F+ R DAV A+K  N
Sbjct: 233 LYVRNLMLSTSEEMIEK---EFNSIKPGAV--ERVKKIRDYAFVHFSNREDAVEAMKALN 287

Query: 196 NVQLDGKPMKIEI 234
              LDG P+++ +
Sbjct: 288 GKVLDGSPIEVTL 300

---

>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating|
           protein)
          Length = 594

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 22/73 (30%), Positives = 39/73 (53%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L++ NL    S E +++   E   +K  ++  +R  + +  A V F+ R DAV A+K  N
Sbjct: 233 LYVRNLMLSTSEEMIEK---EFNSIKPGAV--ERVKKIRDYAFVHFSNREDAVEAMKALN 287

Query: 196 NVQLDGKPMKIEI 234
              LDG P+++ +
Sbjct: 288 GKVLDGSPIEVTL 300

---

>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 749

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRS-KGTAEVIFARRGDAVAAIKK 189
           LF+  L     ++ L+ELFS++G +K+C +  ++  ++ +G   V F+   D   A+K+
Sbjct: 5   LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 63

---

>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 298

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+  +D  +   +++  F+  G +K   I  DR+G SKG   V F    D    ++  +
Sbjct: 42  VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--S 99

Query: 196 NVQLDGKPMKI 228
            +   GK +K+
Sbjct: 100 QINFHGKKLKL 110

---

>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15|
          Length = 296

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           +++ ++ +  + E + +L S +G +    + FD ++GRSKG A + F     + +A++  
Sbjct: 20  VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79

Query: 193 NNVQLDGKPMK 225
           N  QL  + +K
Sbjct: 80  NGYQLGSRFLK 90

---

>SNRPA_XENLA (P45429) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)|
           (U1A protein) (U1-A)
          Length = 282

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKE----LFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAI 183
           ++I NL+  +  ++LK+    +FS+ G +    I   R+ + +G A VIF     A  A+
Sbjct: 12  IYINNLNEKIKKDELKKSLYAIFSQFGQI--LDILVSRNLKMRGQAFVIFKETSSATNAL 69

Query: 184 KKYNNVQLDGKPMKIE 231
           +         KPM+I+
Sbjct: 70  RSMQGFPFYDKPMRIQ 85

---

>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3|
           RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3
           p33) (Translation initiation factor eIF3, p33 subunit)
          Length = 282

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAA 180
           L +TNL      E+L++LF   G ++R  +  D+ +GR+KG A V +  R  A+ A
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKA 259

---

>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 295

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+  +D  +   +++  F+  G +K   I  DR+G SKG   V F    D    ++  +
Sbjct: 42  VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVE--S 99

Query: 196 NVQLDGKPMKI 228
            +   GK +K+
Sbjct: 100 QINFHGKKLKL 110

---

>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1) (DAZ homolog)
           (SPGY-like-autosomal)
          Length = 295

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+  +D  +   +++  F+  G +K   I  DR+G SKG   V F    D    ++  +
Sbjct: 42  VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVE--S 99

Query: 196 NVQLDGKPMKI 228
            +   GK +K+
Sbjct: 100 QINFHGKKLKL 110

---

>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 504

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+  L+     EDL+ +FS  G +  C +  D +SG S   A + F  R  A  A  K 
Sbjct: 248 LFVCKLNPVTQDEDLELIFSRFGKILSCEVVRDKKSGDSLQYAFIEFDEREAAEQAYFKM 307

Query: 193 NNVQLDGKPMKIE 231
            NV +D + + ++
Sbjct: 308 QNVLVDDRRIWVD 320

---

>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 296

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           +F+  +D  +   +++  F+  G +K   I  DR+G SKG   V F    D    ++  +
Sbjct: 42  VFVGGIDVRMDETEIRGFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVE--S 99

Query: 196 NVQLDGKPMKI 228
            +   GK +K+
Sbjct: 100 QINFHGKKLKL 110

---

>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa)
          Length = 220

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           L + NL +  S + L+ +F + G +    I  DR +  S+G A V F  + DA  A+   
Sbjct: 15  LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 74

Query: 193 NNVQLDGKPMKIEI 234
           +   LDG+ +++++
Sbjct: 75  DGAVLDGRELRVQM 88

---

>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa)
          Length = 220

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           L + NL +  S + L+ +F + G +    I  DR +  S+G A V F  + DA  A+   
Sbjct: 15  LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 74

Query: 193 NNVQLDGKPMKIEI 234
           +   LDG+ +++++
Sbjct: 75  DGAVLDGRELRVQM 88

---

>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein) (Putative myelin regulatory factor 1) (MRF-1)
          Length = 220

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           L + NL +  S + L+ +F + G +    I  DR +  S+G A V F  + DA  A+   
Sbjct: 15  LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 74

Query: 193 NNVQLDGKPMKIEI 234
           +   LDG+ +++++
Sbjct: 75  DGAVLDGRELRVQM 88

---

>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein)
          Length = 220

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           L + NL +  S + L+ +F + G +    I  DR +  S+G A V F  + DA  A+   
Sbjct: 15  LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 74

Query: 193 NNVQLDGKPMKIEI 234
           +   LDG+ +++++
Sbjct: 75  DGAVLDGRELRVQM 88

---

>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)|
          Length = 518

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKR--------CSINFDR-SGRSKGTAEVIFARRGD 168
           +F+  L   V+ E + + F ++G +K          ++  DR +G+ KG A V F     
Sbjct: 280 IFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPS 339

Query: 169 AVAAIKKYNNVQLDGKPMKI 228
           A AAI  ++  +  G P+K+
Sbjct: 340 AKAAIDWFDGKEFSGNPIKV 359

---

>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor|
          Length = 212

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           +L+I  L  G     LK+ FS    +    +  ++ +GRS+G   V F     A +AI  
Sbjct: 32  KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91

Query: 190 YNNVQLDGKPMKIEI 234
            N  +L+G  + + +
Sbjct: 92  MNGQELNGFNISVNV 106

---

>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)|
           (Translocated in liposarcoma protein) (POMp75) (75 kDa
           DNA-pairing protein)
          Length = 526

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKR--------CSINFDR-SGRSKGTAEVIFARRGD 168
           +F+  L   V+ E + + F ++G +K          ++  DR +G+ KG A V F     
Sbjct: 287 IFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPS 346

Query: 169 AVAAIKKYNNVQLDGKPMKI 228
           A AAI  ++  +  G P+K+
Sbjct: 347 AKAAIDWFDGKEFSGNPIKV 366

---

>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)|
          Length = 512

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKR--------CSINFDR-SGRSKGTAEVIFARRGD 168
           +F+  L   V+ E + + F ++G +K          ++  DR +G+ KG A V F     
Sbjct: 273 IFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPS 332

Query: 169 AVAAIKKYNNVQLDGKPMKI 228
           A AAI  ++  +  G P+K+
Sbjct: 333 AKAAIDWFDGKEFSGNPIKV 352

---

>HSH49_YEAST (Q99181) Protein HSH49|
          Length = 213

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRS-KGTAEVIFARRGDAVAAIKKY 192
           +++ N+D  ++ E L ELF ++  + R     D+  ++ +G A + F  +GDA  AIK  
Sbjct: 11  VYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKIM 70

Query: 193 NN-VQLDGKPMKI 228
           NN V+L  + +K+
Sbjct: 71  NNTVRLYDRLIKV 83

---

>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)|
          Length = 305

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = +1

Query: 10  EELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDA-VAAI 183
           ++LF+  L   V+  DL E FS+ G +++  I  D+ SG+ +G   V F     A  AA+
Sbjct: 98  KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAV 157

Query: 184 KKYNNVQ 204
            K++ +Q
Sbjct: 158 VKFHPIQ 164

---

>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein)
          Length = 221

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           L + NL +  S + L+ +F + G +    I  DR +  S+G A V F  + DA  A+   
Sbjct: 16  LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75

Query: 193 NNVQLDGKPMKIEI 234
           +   LDG+ +++++
Sbjct: 76  DGAVLDGRELRVQM 89

---

>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)|
          Length = 476

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 52  EDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIK 186
           EDL+E F   GD++ CSI  ++ +G SKG   V + +   A  AI+
Sbjct: 134 EDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIE 179

---

>DRBP1_HUMAN (Q8IUH3) Developmentally-regulated RNA-binding protein 1 (RB-1)|
          Length = 476

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 52  EDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIK 186
           EDL+E F   GD++ CSI  ++ +G SKG   V + +   A  AI+
Sbjct: 134 EDLREKFKVYGDIEYCSIIKNKVTGESKGLGYVRYLKPSQAAQAIE 179

---

>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1|
          Length = 283

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +1

Query: 4   RHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR--SGRSKGTAEVIFARRGDAVA 177
           R  ++ I  L   V+ + + E+FS  G +K   +  DR     SKG A V F    +A  
Sbjct: 136 RPTKVHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEK 195

Query: 178 AIKKYNNVQLDGK 216
           A+K  +  Q+DG+
Sbjct: 196 ALKHMDGGQIDGQ 208

---

>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1|
          Length = 476

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 52  EDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIK 186
           EDL+E F   GD++ CS+  ++ +G SKG   V + +   A  AI+
Sbjct: 134 EDLREKFKVYGDIEYCSVIKNKVTGESKGLGYVRYLKPSQAAQAIE 179

---

>RAVR2_MOUSE (Q7TPD6) Protein raver-2|
          Length = 673

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAA 180
           L ITNL    + E+ +EL    G+++RC + +   +G SKG   V + ++  A  A
Sbjct: 133 LCITNLPISFTLEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKA 188

---

>GRSF1_HUMAN (Q12849) G-rich sequence factor 1 (GRSF-1)|
          Length = 447

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = +1

Query: 31  LDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKK 189
           L F  + +D+   F+ L  + R ++ +  SG++ G A+V F    DAVAA+ K
Sbjct: 375 LPFQANAQDIINFFAPLKPV-RITMEYSSSGKATGEADVHFETHEDAVAAMLK 426

---

>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)|
          Length = 375

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKKYN 195
           L++ NL   V+   + +LFS++G  K C +  + +        V F    DA AA+   N
Sbjct: 11  LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMN 69

Query: 196 NVQLDGKPMKI 228
             ++ GK +K+
Sbjct: 70  GRKILGKEVKV 80

---

>SGN1_YEAST (P40561) RNA-binding protein SGN1|
          Length = 250

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKY 192
           +F+ N+   V+ E +++ F + G +KR ++ +DR +G  KG   + F        A+ + 
Sbjct: 66  IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKAL-QL 124

Query: 193 NNVQLDGKPMKI 228
           N  +L GK + +
Sbjct: 125 NGGELKGKKIAV 136

---

>SNRPA_DROME (P43332) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)|
           (U1-A) (Sex determination protein snf)
          Length = 216

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
 Frame = +1

Query: 7   HEELFITNLDFGVSTEDLKE----LFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAV 174
           ++ ++I NL+  +  E+LK+    +FS+ G +    I   ++ + +G A VIF   G A 
Sbjct: 6   NQTIYINNLNEKIKKEELKKSLYAIFSQFGQI--LDIVALKTLKMRGQAFVIFKEIGSAS 63

Query: 175 AAIKKYNNVQLDGKPMKI 228
            A++         KPM+I
Sbjct: 64  NALRTMQGFPFYDKPMQI 81

---

>RAVR2_HUMAN (Q9HCJ3) Protein raver-2|
          Length = 691

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAA 180
           L ITN+    ++E+ +EL    G+++RC + +   +G SKG   V + ++  A  A
Sbjct: 144 LCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKA 199

---

>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 519

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRS--------------GRSKGTAEVIF 153
           L +  L   ++ ++++ LFS +G+++   +  D+S              G+S G   V +
Sbjct: 187 LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNY 246

Query: 154 ARRGDAVAAIKKYNNVQLDGKPMKI 228
            R  DA  A+   N ++L  K +K+
Sbjct: 247 VRPQDAEQAVNVLNGLRLQNKTIKV 271

---

>CNOT4_MOUSE (Q8BT14) CCR4-NOT transcription complex subunit 4 (EC 6.3.2.-) (E3|
           ubiquitin protein ligase CNOT4) (CCR4-associated factor
           4) (Potential transcriptional repressor NOT4Hp)
          Length = 575

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = +1

Query: 64  ELFSELGDLKRCSINFDRS-GRSKG---TAEVIFARRGDAVAAIKKYNNVQLDGKPMKIE 231
           E F + G + +  IN   S   S+G   +A V + R  DA+ AI+  NNV +DG+ +K  
Sbjct: 130 EYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKAS 189

Query: 232 I 234
           +
Sbjct: 190 L 190

---

>CNOT4_HUMAN (O95628) CCR4-NOT transcription complex subunit 4 (EC 6.3.2.-) (E3|
           ubiquitin protein ligase CNOT4) (CCR4-associated factor
           4) (Potential transcriptional repressor NOT4Hp)
          Length = 575

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
 Frame = +1

Query: 64  ELFSELGDLKRCSINFDRS-GRSKG---TAEVIFARRGDAVAAIKKYNNVQLDGKPMKIE 231
           E F + G + +  IN   S   S+G   +A V + R  DA+ AI+  NNV +DG+ +K  
Sbjct: 130 EYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKAS 189

Query: 232 I 234
           +
Sbjct: 190 L 190

---

>GRSF1_MOUSE (Q8C5Q4) G-rich sequence factor 1 (GRSF-1)|
          Length = 479

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = +1

Query: 31  LDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAIKK 189
           L F  + +D+   F+ L  + R ++ +  SG++ G A+V F    DAVAA+ K
Sbjct: 407 LPFQANAQDIINFFAPLKPV-RITMEYSSSGKATGEADVHFDTHEDAVAAMLK 458

---

>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A|
          Length = 166

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +1

Query: 19  FITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKYN 195
           F+  L +      L+  FS+ G++    I  DR +GRS+G   V F        AI+  N
Sbjct: 11  FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70

Query: 196 NVQLDGKPMKI 228
              LDG+ + +
Sbjct: 71  GQDLDGRSITV 81

---

>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)|
          Length = 483

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRS--------------GRSKGTAEVIF 153
           L +  L   ++ ++++ LFS +G+++   +  D+S              G+S G   V +
Sbjct: 151 LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNY 210

Query: 154 ARRGDAVAAIKKYNNVQLDGKPMKI 228
            R  DA  A+   N ++L  K +K+
Sbjct: 211 VRPQDAEQAVNVLNGLRLQNKTIKV 235

---

>PRAM2_HUMAN (O60811) PRAME family member 2|
          Length = 474

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 468 VGEVPCPGCGADADQRISRHLC 533
           +G  PCP CG+   + +  HLC
Sbjct: 452 IGPTPCPSCGSSPSEELELHLC 473

---

>PRAM1_HUMAN (O95521) PRAME family member 1|
          Length = 474

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 468 VGEVPCPGCGADADQRISRHLC 533
           +G  PCP CG+   + +  HLC
Sbjct: 452 IGPTPCPSCGSSPSEELELHLC 473

---

>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)|
           (hnRNP 48) (HRP48.1)
          Length = 421

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSI-NFDRSGRSKGTAEVIFA 156
           +LF+  L +  + E+L   F   GD+  C +   + SGRS+G   V FA
Sbjct: 8   KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFA 56

---

>SNRPA_MOUSE (Q62189) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)|
           (U1A protein) (U1-A)
          Length = 286

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKE----LFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAI 183
           ++I NL+  +  ++LK+    +FS+ G +    I   R  + +G A VIF     A  A+
Sbjct: 17  IYINNLNEKIKKDELKKSLYAIFSQFGQI--LDILVSRIMKMRGQAFVIFKEVTSATNAL 74

Query: 184 KKYNNVQLDGKPMKIE 231
           +         KPM+I+
Sbjct: 75  RSMQGFPFYDKPMRIQ 90

---

>BOULE_DROME (Q24207) Protein boule|
          Length = 228

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDA 171
           +F+  +    +  DL  +FS  G +K   I  DR+G SKG   V F    +A
Sbjct: 35  IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTFETEQEA 86

---

>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 459

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+  L+     EDL+ +FS  G +  C +  D R+G S   A + F  + D   A  K 
Sbjct: 250 LFVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKM 309

Query: 193 NNVQLDGKPMKIE 231
             V +D   + ++
Sbjct: 310 QGVLIDDHRIHVD 322

---

>HNRH2_MOUSE (P70333) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')|
          Length = 449

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 22  ITNLDFGVSTEDLKELFSELGDLKR-CSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           +  L FG S E++ + FS L  +    ++  D  GRS G A V FA +  A  A+KK+
Sbjct: 115 LRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172

---

>HNRH2_HUMAN (P55795) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')|
           (FTP-3)
          Length = 449

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 22  ITNLDFGVSTEDLKELFSELGDLKR-CSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           +  L FG S E++ + FS L  +    ++  D  GRS G A V FA +  A  A+KK+
Sbjct: 115 LRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKH 172

---

>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGR--SKGTAEVIFARRGDAVAAIK 186
           ++ I  L   V+ + + E+FS  G +K   +  +R     SKG A V F    +A  A+K
Sbjct: 162 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221

Query: 187 KYNNVQLDGK 216
             +  Q+DG+
Sbjct: 222 HMDGGQIDGQ 231

---

>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGR--SKGTAEVIFARRGDAVAAIK 186
           ++ I  L   V+ + + E+FS  G +K   +  +R     SKG A V F    +A  A+K
Sbjct: 162 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221

Query: 187 KYNNVQLDGK 216
             +  Q+DG+
Sbjct: 222 HMDGGQIDGQ 231

---

>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGR--SKGTAEVIFARRGDAVAAIK 186
           ++ I  L   V+ + + E+FS  G +K   +  +R     SKG A V F    +A  A+K
Sbjct: 162 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221

Query: 187 KYNNVQLDGK 216
             +  Q+DG+
Sbjct: 222 HMDGGQIDGQ 231

---

>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGR--SKGTAEVIFARRGDAVAAIK 186
           ++ I  L   V+ + + E+FS  G +K   +  +R     SKG A V F    +A  A+K
Sbjct: 162 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221

Query: 187 KYNNVQLDGK 216
             +  Q+DG+
Sbjct: 222 HMDGGQIDGQ 231

---

>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related|
           protein LDC2)
          Length = 305

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDRSGR--SKGTAEVIFARRGDAVAAIK 186
           ++ I  L   V+ + + E+FS  G +K   +  +R     SKG A V F    +A  A+K
Sbjct: 162 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221

Query: 187 KYNNVQLDGK 216
             +  Q+DG+
Sbjct: 222 HMDGGQIDGQ 231

---

>HNRH1_MOUSE (O35737) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)|
          Length = 448

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 22  ITNLDFGVSTEDLKELFSELGDLKR-CSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           +  L FG S E++ + FS L  +    ++  D  GRS G A V FA +  A  A+KK+
Sbjct: 114 LRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 171

---

>HNRH1_HUMAN (P31943) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)|
          Length = 448

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 22  ITNLDFGVSTEDLKELFSELGDLKR-CSINFDRSGRSKGTAEVIFARRGDAVAAIKKY 192
           +  L FG S E++ + FS L  +    ++  D  GRS G A V FA +  A  A+KK+
Sbjct: 114 LRGLPFGCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKH 171

---

>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7|
          Length = 176

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +1

Query: 19  FITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKKYN 195
           F+  L +      L+  F++ GD+    I  DR +GRS+G   V F        AI+  N
Sbjct: 11  FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70

Query: 196 NVQLDGKPMKI 228
              LDG+ + +
Sbjct: 71  GQDLDGRSITV 81

---

>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKK 189
           ++FI  L +  + E L+E F + G++K C +  D  + RS+G   V F  +   V  +  
Sbjct: 21  KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA-GVDKVLA 79

Query: 190 YNNVQLDGK 216
            +  +LD K
Sbjct: 80  QSRHELDSK 88

---

>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKK 189
           ++FI  L +  + E L+E F + G++K C +  D  + RS+G   V F  +   V  +  
Sbjct: 21  KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA-GVDKVLA 79

Query: 190 YNNVQLDGK 216
            +  +LD K
Sbjct: 80  QSRHELDSK 88

---

>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKK 189
           ++FI  L +  + E L+E F + G++K C +  D  + RS+G   V F  +   V  +  
Sbjct: 21  KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA-GVDKVLA 79

Query: 190 YNNVQLDGK 216
            +  +LD K
Sbjct: 80  QSRHELDSK 88



 Score = 29.6 bits (65), Expect = 6.9
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 4   RHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIF 153
           R +++F+  L    + ED+K+ F + G +    + FD+ + R +G   V F
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157

---

>RU2B_SCHPO (Q7LL14) Probable U2 small nuclear ribonucleoprotein B"|
          Length = 111

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKE----LFSELGDLKRCSINFDRSGRSKGTAEVIFARRGDAVAAI 183
           L++ NL+  ++  DL+     LFS  G +    I   ++ + +G A V+F     A  A+
Sbjct: 6   LYVNNLNDKINKNDLRTALYMLFSTYGTV--VDIVALKTPKMRGQAHVVFFDPSAAAIAM 63

Query: 184 KKYNNVQLDGKPMKIE 231
           K   N    GK MKI+
Sbjct: 64  KALKNFIFFGKEMKIQ 79

---

>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear|
           ribonucleoprotein 40) (HNRNP 40)
          Length = 344

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +1

Query: 4   RHEELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAA 180
           RH ++F+  L   +S E++K  F + G++    + FD+   + KG   + F      V  
Sbjct: 134 RHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSE-QVVTD 192

Query: 181 IKKYNNVQLDGKPMKIE 231
           + K    ++ GK + ++
Sbjct: 193 LLKTPKQKIAGKEVDVK 209

---

>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 494

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+  L+   + EDL+ +FS  G +  C +  D ++G S   A + F  +     A  K 
Sbjct: 255 LFVCKLNPVTTDEDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFEDKKSCEEAYSKM 314

Query: 193 NNVQLDGKPMKIE 231
           ++V +D + + ++
Sbjct: 315 DSVLIDDRRIHVD 327

---

>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 461

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 16  LFITNLDFGVSTEDLKELFSELGDLKRCSINFD-RSGRSKGTAEVIFARRGDAVAAIKKY 192
           LF+  L+     EDL+ +FS  G +  C +  D R+G S   A + F  + D   A  K 
Sbjct: 250 LFVCKLNPVTQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFESQKDCEQAYFKM 309

Query: 193 NNVQLDGKPMKIE 231
             V +D   + ++
Sbjct: 310 QGVLIDDHRIHVD 322

---

>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 406

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           +LF+  LD+  + E L+  FS+ G++  C I  D+ + +S+G   V F +  + V  +  
Sbjct: 11  KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF-KDPNCVGTVLA 69

Query: 190 YNNVQLDGK 216
                LDG+
Sbjct: 70  SRPHTLDGR 78

---

>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1)
          Length = 407

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           +LF+  LD+  + E L+  FS+ G++  C I  D+ + +S+G   V F +  + V  +  
Sbjct: 11  KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF-KDPNCVGTVLA 69

Query: 190 YNNVQLDGK 216
                LDG+
Sbjct: 70  SRPHTLDGR 78

---

>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1) (Proline-rich Vg1
           mRNA-binding protein)
          Length = 360

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +1

Query: 13  ELFITNLDFGVSTEDLKELFSELGDLKRCSINFDR-SGRSKGTAEVIFARRGDAVAAIKK 189
           +LF+  LD+  + E L+  FS+ G++  C I  D+ + +S+G   V F +  + V  +  
Sbjct: 11  KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF-KDPNCVGTVLA 69

Query: 190 YNNVQLDGK 216
                LDG+
Sbjct: 70  SRPHTLDGR 78


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,811,046
Number of Sequences: 219361
Number of extensions: 1172205
Number of successful extensions: 3965
Number of sequences better than 10.0: 253
Number of HSP's better than 10.0 without gapping: 3686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3919
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

---