>gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0004O15
              map near R3342S, complete sequence
          Length = 140142

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                  
Query: 277    cctcaactcggtaacctcactttcctctctgtcctc 312
              |||||||||||||||||| ||||||||||| |||||
Sbjct: 116583 cctcaactcggtaacctctctttcctctctatcctc 116548

>gb|DQ355953.1| Oryza sativa (indica cultivar-group) cultivar Teqing receptor kinase
             (TRKd) pseudogene, complete sequence; and receptor kinase
             TRKa (TRKa), receptor kinase TRKe (TRKe), and receptor
             kinase TRKb (TRKb) genes, complete cds
          Length = 33301

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                 
Query: 277   cctcaactcggtaacctcactttcctctctgtcctc 312
             |||||||||||||||||| ||||||||||| |||||
Sbjct: 13568 cctcaactcggtaacctctctttcctctctatcctc 13603

>gb|DQ355952.1| Oryza sativa (indica cultivar-group) cultivar Minghui 63 receptor
             kinase (MRKd) pseudogene, complete sequence; and receptor
             kinase MRKa (MRKa), bacterial blight resistance protein
             XA26 (Xa26), and receptor kinase MRKc (MRKc) genes,
             complete cds
          Length = 45529

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                 
Query: 277   cctcaactcggtaacctcactttcctctctgtcctc 312
             |||||||||||||||||| ||||||||||| |||||
Sbjct: 14510 cctcaactcggtaacctctctttcctctctatcctc 14545

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                    
Query: 277      cctcaactcggtaacctcactttcctctctgtcctc 312
                |||||||||||||||||| ||||||||||| |||||
Sbjct: 27605390 cctcaactcggtaacctctctttcctctctatcctc 27605425



 Score = 46.1 bits (23), Expect = 0.19
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 278      ctcaactcggtaacctcactttcctctctgtcctc 312
                |||| |||||||||||| |||||||||| ||||||
Sbjct: 27752805 ctcacctcggtaacctctctttcctctccgtcctc 27752839



 Score = 46.1 bits (23), Expect = 0.19
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 723     tctattcaataacacgccttccttgaagtac 753
               ||||||||| |||||||||||||||| ||||
Sbjct: 5524610 tctattcaacaacacgccttccttgaggtac 5524580



 Score = 44.1 bits (22), Expect = 0.76
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 275      cgcctcaactcggtaacctcactttcctctctgtcctc 312
                ||||||| |||||||||||| ||||||||  |||||||
Sbjct: 27787029 cgcctcacctcggtaacctctctttcctccgtgtcctc 27786992



 Score = 42.1 bits (21), Expect = 3.0
 Identities = 75/93 (80%)
 Strand = Plus / Plus

                                                                            
Query: 112      ctgctggatttcaaagcccagctcctggaccctcttggcatcctggccggcaactggacc 171
                ||||||| ||||||||| |||||    |||||||| ||||| || ||| |||||||||||
Sbjct: 27752639 ctgctggctttcaaagcgcagctggccgaccctctcggcattcttgccagcaactggacc 27752698

                                                 
Query: 172      cccagcacgtctttctgccgctggatcggcatc 204
                  || |||  | |||||||||||| | ||||||
Sbjct: 27752699 gtcaacacaccgttctgccgctgggtgggcatc 27752731

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                    
Query: 277      cctcaactcggtaacctcactttcctctctgtcctc 312
                |||||||||||||||||| ||||||||||| |||||
Sbjct: 27629378 cctcaactcggtaacctctctttcctctctatcctc 27629413



 Score = 46.1 bits (23), Expect = 0.19
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 278      ctcaactcggtaacctcactttcctctctgtcctc 312
                |||| |||||||||||| |||||||||| ||||||
Sbjct: 27776793 ctcacctcggtaacctctctttcctctccgtcctc 27776827



 Score = 46.1 bits (23), Expect = 0.19
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 723     tctattcaataacacgccttccttgaagtac 753
               ||||||||| |||||||||||||||| ||||
Sbjct: 5591087 tctattcaacaacacgccttccttgaggtac 5591057



 Score = 44.1 bits (22), Expect = 0.76
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 275      cgcctcaactcggtaacctcactttcctctctgtcctc 312
                ||||||| |||||||||||| ||||||||  |||||||
Sbjct: 27811017 cgcctcacctcggtaacctctctttcctccgtgtcctc 27810980



 Score = 42.1 bits (21), Expect = 3.0
 Identities = 75/93 (80%)
 Strand = Plus / Plus

                                                                            
Query: 112      ctgctggatttcaaagcccagctcctggaccctcttggcatcctggccggcaactggacc 171
                ||||||| ||||||||| |||||    |||||||| ||||| || ||| |||||||||||
Sbjct: 27776627 ctgctggctttcaaagcgcagctggccgaccctctcggcattcttgccagcaactggacc 27776686

                                                 
Query: 172      cccagcacgtctttctgccgctggatcggcatc 204
                  || |||  | |||||||||||| | ||||||
Sbjct: 27776687 gtcaacacaccgttctgccgctgggtgggcatc 27776719

>gb|DQ355954.1| Oryza sativa (indica cultivar-group) cultivar Teqing receptor kinase
             (TRKf) pseudogene, complete sequence
          Length = 25590

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                         
Query: 109   gcgctgctggatttcaaagcccagctcctggaccctcttggcatcctggccggcaactgg 168
             |||||||||| ||||||||| | ||||   || ||||||||| |||| ||||||||||||
Sbjct: 12753 gcgctgctggctttcaaagcgcggctctccgatcctcttggcgtccttgccggcaactgg 12694

               
Query: 169   ac 170
             ||
Sbjct: 12693 ac 12692



 Score = 44.1 bits (22), Expect = 0.76
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 275   cgcctcaactcggtaacctcactttcctctctgtcctc 312
             ||||||| |||||||||||| ||||||||  |||||||
Sbjct: 12587 cgcctcacctcggtaacctctctttcctccgtgtcctc 12550

>ref|NM_188585.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3408

 Score = 50.1 bits (25), Expect = 0.012
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                       
Query: 106 gcggcgctgctggatttcaaagcccagctcctggaccctcttggcatcctggccggcaac 165
           ||||||||||||| |||||| |||||||||   || ||||| ||| |||| ||||||| |
Sbjct: 238 gcggcgctgctggctttcaaggcccagctcgccgatcctctcggcgtcctcgccggcagc 297

                
Query: 166 tggac 170
           |||||
Sbjct: 298 tggac 302

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.012
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                           
Query: 106     gcggcgctgctggatttcaaagcccagctcctggaccctcttggcatcctggccggcaac 165
               ||||||||||||| |||||| |||||||||   || ||||| ||| |||| ||||||| |
Sbjct: 7081064 gcggcgctgctggctttcaaggcccagctcgccgatcctctcggcgtcctcgccggcagc 7081123

                    
Query: 166     tggac 170
               |||||
Sbjct: 7081124 tggac 7081128

>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0452F10
          Length = 145120

 Score = 50.1 bits (25), Expect = 0.012
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                         
Query: 106   gcggcgctgctggatttcaaagcccagctcctggaccctcttggcatcctggccggcaac 165
             ||||||||||||| |||||| |||||||||   || ||||| ||| |||| ||||||| |
Sbjct: 68644 gcggcgctgctggctttcaaggcccagctcgccgatcctctcggcgtcctcgccggcagc 68703

                  
Query: 166   tggac 170
             |||||
Sbjct: 68704 tggac 68708

>ref|XM_474934.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4032

 Score = 46.1 bits (23), Expect = 0.19
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 109 gcgctgctggatttcaaagcccagctc 135
           |||||||||| ||||||||||||||||
Sbjct: 133 gcgctgctggctttcaaagcccagctc 159

>gb|AF172282.1| Oryza sativa adh1-adh2 region
          Length = 339485

 Score = 46.1 bits (23), Expect = 0.19
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 723    tctattcaataacacgccttccttgaagtac 753
              ||||||||| |||||||||||||||| ||||
Sbjct: 151406 tctattcaacaacacgccttccttgaggtac 151436

>gb|AC116367.10| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0059H21 map R3342S, complete sequence
          Length = 133790

 Score = 46.1 bits (23), Expect = 0.19
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 278   ctcaactcggtaacctcactttcctctctgtcctc 312
             |||| |||||||||||| |||||||||| ||||||
Sbjct: 92867 ctcacctcggtaacctctctttcctctccgtcctc 92833



 Score = 44.1 bits (22), Expect = 0.76
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 275   cgcctcaactcggtaacctcactttcctctctgtcctc 312
             ||||||| |||||||||||| ||||||||  |||||||
Sbjct: 58643 cgcctcacctcggtaacctctctttcctccgtgtcctc 58680



 Score = 42.1 bits (21), Expect = 3.0
 Identities = 75/93 (80%)
 Strand = Plus / Minus

                                                                         
Query: 112   ctgctggatttcaaagcccagctcctggaccctcttggcatcctggccggcaactggacc 171
             ||||||| ||||||||| |||||    |||||||| ||||| || ||| |||||||||||
Sbjct: 93033 ctgctggctttcaaagcgcagctggccgaccctctcggcattcttgccagcaactggacc 92974

                                              
Query: 172   cccagcacgtctttctgccgctggatcggcatc 204
               || |||  | |||||||||||| | ||||||
Sbjct: 92973 gtcaacacaccgttctgccgctgggtgggcatc 92941

>gb|AC123522.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0051B13, complete sequence
          Length = 178000

 Score = 46.1 bits (23), Expect = 0.19
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 723   tctattcaataacacgccttccttgaagtac 753
             ||||||||| |||||||||||||||| ||||
Sbjct: 69728 tctattcaacaacacgccttccttgaggtac 69698

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.19
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 109     gcgctgctggatttcaaagcccagctc 135
               |||||||||| ||||||||||||||||
Sbjct: 8129991 gcgctgctggctttcaaagcccagctc 8129965

>emb|AL606597.4|OSJN00042 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0045P24,
             complete sequence
          Length = 124420

 Score = 46.1 bits (23), Expect = 0.19
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 109   gcgctgctggatttcaaagcccagctc 135
             |||||||||| ||||||||||||||||
Sbjct: 63523 gcgctgctggctttcaaagcccagctc 63497

>dbj|AK111797.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102H15, full
           insert sequence
          Length = 3940

 Score = 46.1 bits (23), Expect = 0.19
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 723 tctattcaataacacgccttccttgaagtac 753
           ||||||||| |||||||||||||||| ||||
Sbjct: 650 tctattcaacaacacgccttccttgaggtac 680

>dbj|AK109810.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-G09, full
            insert sequence
          Length = 2329

 Score = 46.1 bits (23), Expect = 0.19
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 278  ctcaactcggtaacctcactttcctctctgtcctc 312
            |||| |||||||||||| |||||||||| ||||||
Sbjct: 1084 ctcacctcggtaacctctctttcctctccgtcctc 1050



 Score = 42.1 bits (21), Expect = 3.0
 Identities = 75/93 (80%)
 Strand = Plus / Minus

                                                                        
Query: 112  ctgctggatttcaaagcccagctcctggaccctcttggcatcctggccggcaactggacc 171
            ||||||| ||||||||| |||||    |||||||| ||||| || ||| |||||||||||
Sbjct: 1250 ctgctggctttcaaagcgcagctggccgaccctctcggcattcttgccagcaactggacc 1191

                                             
Query: 172  cccagcacgtctttctgccgctggatcggcatc 204
              || |||  | |||||||||||| | ||||||
Sbjct: 1190 gtcaacacaccgttctgccgctgggtgggcatc 1158

>dbj|AK100040.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151E16, full
           insert sequence
          Length = 3426

 Score = 46.1 bits (23), Expect = 0.19
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 723 tctattcaataacacgccttccttgaagtac 753
           ||||||||| |||||||||||||||| ||||
Sbjct: 650 tctattcaacaacacgccttccttgaggtac 680

>gb|AC115293.5| Mus musculus BAC clone RP23-92N2 from chromosome 5, complete sequence
          Length = 239951

 Score = 44.1 bits (22), Expect = 0.76
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 53     tctctgcttcttccttttcttc 74
              ||||||||||||||||||||||
Sbjct: 156498 tctctgcttcttccttttcttc 156477

>gb|AC098684.13| Mus musculus strain 129/Sv clone ct7-391l15 map 5, complete sequence
          Length = 150686

 Score = 44.1 bits (22), Expect = 0.76
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 53    tctctgcttcttccttttcttc 74
             ||||||||||||||||||||||
Sbjct: 12134 tctctgcttcttccttttcttc 12155

>gb|AC163642.3| Mus musculus BAC clone RP24-456N17 from chromosome 5, complete sequence
          Length = 204856

 Score = 44.1 bits (22), Expect = 0.76
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 53     tctctgcttcttccttttcttc 74
              ||||||||||||||||||||||
Sbjct: 125463 tctctgcttcttccttttcttc 125484

>gb|AY057994.1| Pasteurella multocida subsp. tigris 16S ribosomal RNA gene, complete
            sequence
          Length = 1536

 Score = 44.1 bits (22), Expect = 0.76
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 720  ctatctattcaataacacgccttcct 745
            |||||||||||||||||| |||||||
Sbjct: 1067 ctatctattcaataacaccccttcct 1092

>emb|AL583854.7| Human DNA sequence from clone RP11-570K4 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 135953

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 60    ttcttccttttcttcgagtcc 80
             |||||||||||||||||||||
Sbjct: 73274 ttcttccttttcttcgagtcc 73294

>ref|XM_788896.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC589247 (LOC589247), partial mRNA
          Length = 3128

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 53  tctctgcttcttccttttctt 73
           |||||||||||||||||||||
Sbjct: 691 tctctgcttcttccttttctt 671

>emb|AL671904.8| Mouse DNA sequence from clone RP23-243J2 on chromosome X, complete
            sequence
          Length = 132834

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 328  aatctcacaggttccatccct 348
            |||||||||||||||||||||
Sbjct: 3064 aatctcacaggttccatccct 3044


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,660,585
Number of Sequences: 3902068
Number of extensions: 6660585
Number of successful extensions: 141781
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 141484
Number of HSP's gapped (non-prelim): 297
length of query: 859
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 836
effective length of database: 17,143,297,704
effective search space: 14331796880544
effective search space used: 14331796880544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)