ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63k10 |
|---|---|
| Clone Library Name | barley_pub |
>CDT1_HUMAN (Q9H211) DNA replication factor Cdt1 (Double parked homolog) (DUP)| Length = 546 Score = 33.1 bits (74), Expect = 0.58 Identities = 40/131 (30%), Positives = 53/131 (40%), Gaps = 2/131 (1%) Frame = -2 Query: 434 KMVFSSKDIEHVLEPQSQEILYFFQS*LLQWSIQLVPLQEVHREHMA*NQGVVELPDQCP 255 + +FS K +EHV E + + +VP ++ R H N V E+PD Sbjct: 295 RQIFSQKLVEHVKEHHKAFLASLSPA-------MVVPEDQLTRWHPRFN--VDEVPDI-- 343 Query: 254 RPASLPQPPARHTRQQATSSRVY-EERIWAEPWPWCFLRTPVQREACLSRPAA-EPVCRW 81 PA+LPQPPA T + T+ V R P L R A S P + P Sbjct: 344 EPAALPQPPA--TEKLTTAQEVLARARNLISPRMEKALSQLALRSAAPSSPGSPRPALPA 401 Query: 80 TPPPCTHLRSP 48 TPP SP Sbjct: 402 TPPATPPAASP 412
>MRAW_CARHZ (Q3AAD7) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 311 Score = 33.1 bits (74), Expect = 0.58 Identities = 18/59 (30%), Positives = 29/59 (49%) Frame = +2 Query: 221 VLQEVGEEKLVLDIGQAALRRPDSKPYAHDVLLAMALAECSIAKASFEKSKVSLGFEAL 397 + E GEE+ I +A ++R + KP+ + LA + AKA EK F+A+ Sbjct: 149 IFYEYGEERYAPQIARAIVKRREKKPFTSTLELAEEIIRAVPAKARREKHPAKRVFQAI 207
>INHA_SHEEP (P38440) Inhibin alpha chain precursor (Fragment)| Length = 265 Score = 32.3 bits (72), Expect = 0.98 Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 7/49 (14%) Frame = +2 Query: 152 TRAKVPP------RSSLHIPWSWLPAALCVLQEVGEEKLV-LDIGQAAL 277 TRAK P RS+ +PW W PAAL +LQ EE D +AAL Sbjct: 118 TRAKPPSGGERARRSTPPLPWPWSPAALRLLQRPPEEPAAHADCHRAAL 166
>INHA_BOVIN (P07994) Inhibin alpha chain precursor| Length = 360 Score = 32.3 bits (72), Expect = 0.98 Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 7/49 (14%) Frame = +2 Query: 152 TRAKVPP------RSSLHIPWSWLPAALCVLQEVGEEKLV-LDIGQAAL 277 TRAK P RS+ +PW W PAAL +LQ EE D +AAL Sbjct: 213 TRAKPPSGGERARRSTPPLPWPWSPAALRLLQRPPEEPAAHADCHRAAL 261
>INHA_MOUSE (Q04997) Inhibin alpha chain precursor| Length = 366 Score = 32.3 bits (72), Expect = 0.98 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 6/37 (16%) Frame = +2 Query: 152 TRAKVPP------RSSLHIPWSWLPAALCVLQEVGEE 244 TRA+ P RS+ +PW W PAAL +LQ EE Sbjct: 220 TRARAPSAGERARRSTPSVPWPWSPAALRLLQRPPEE 256
>INHA_PIG (P04087) Inhibin alpha chain precursor| Length = 364 Score = 32.3 bits (72), Expect = 0.98 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 6/40 (15%) Frame = +2 Query: 152 TRAKVPP------RSSLHIPWSWLPAALCVLQEVGEEKLV 253 TRA+ P RS+ +PW W PAAL +LQ EE V Sbjct: 217 TRARPPSGGERARRSTAPLPWPWSPAALRLLQRPPEEPAV 256
>LTBP3_HUMAN (Q9NS15) Latent transforming growth factor beta-binding protein 3| precursor (LTBP-3) Length = 1302 Score = 31.6 bits (70), Expect = 1.7 Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Frame = -2 Query: 269 PDQCPRPASLPQ-----PPARHTRQQ---ATSSRVYEERIWAEPWPWCFLRTPVQREACL 114 PD P+P LP+ PP T ++ T S V EER + P + Sbjct: 483 PDGPPKPQQLPESPSQAPPPEDTEEERGVTTDSPVSEERSVQQSHPTATTTPARPYPELI 542 Query: 113 SRPAAEPVCRWTPPPCTHLRSPISSA 36 SRP + P RW P RS + A Sbjct: 543 SRP-SPPTMRWFLPDLPPSRSAVEIA 567
>INHA_RAT (P17490) Inhibin alpha chain precursor| Length = 366 Score = 31.6 bits (70), Expect = 1.7 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 6/37 (16%) Frame = +2 Query: 152 TRAKVPP------RSSLHIPWSWLPAALCVLQEVGEE 244 TRA+ P RS+ +PW W PAAL +LQ EE Sbjct: 220 TRARAPSAGERARRSAPSMPWPWSPAALRLLQRPPEE 256
>PI3R6_HUMAN (Q5UE93) Phosphoinositide 3-kinase regulatory subunit 6| (Phosphoinositide 3-kinase gamma adapter protein of 87 kDa) (p87 PI3K adapter protein) (p87PIKAP) Length = 754 Score = 31.2 bits (69), Expect = 2.2 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%) Frame = -3 Query: 217 QGSRQPAPGYMKRGSGRNLGPGASCVLLFKEKLVSHVQQQ---SLSAGGHLLR-VPIFD 53 Q S+ P G+ R G GPGA L +++ L+SH ++ SL A G +L+ +P D Sbjct: 566 QDSKFPKDGFSPRRRGVAEGPGAELSLCYQKALLSHRPREVTVSLRATGLILKAIPASD 624
>CXX1_HUMAN (O15255) CAAX box protein 1 (Cerebral protein 5)| Length = 209 Score = 31.2 bits (69), Expect = 2.2 Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 11/92 (11%) Frame = -2 Query: 269 PDQCP-RPASLPQPPARHTRQQATSSRVYE-ERIWAEPWPWCFLRTPVQREA-------- 120 P +CP R SLP+ +R A S +W+EP P +P + A Sbjct: 47 PPRCPLRSCSLPRSACLCSRNSAPGSCCRPWASLWSEPPP-----SPSSQPAPPMYIWTL 101 Query: 119 -CLSRPAAEPVCRWTPPPCTHLRSPISSARWP 27 C + PV WT P L SP+ R P Sbjct: 102 SCAPAASWAPVTHWTDHPLPPLPSPLLPTRLP 133
>INHA_HORSE (P55101) Inhibin alpha chain precursor| Length = 367 Score = 30.8 bits (68), Expect = 2.9 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 6/37 (16%) Frame = +2 Query: 152 TRAKVPP------RSSLHIPWSWLPAALCVLQEVGEE 244 TRA+ P RS+ +PW W PAAL +LQ EE Sbjct: 220 TRARPPSGGERTRRSTPPLPWPWSPAALRLLQRPPEE 256
>INHA_TRIVU (O77755) Inhibin alpha chain precursor| Length = 361 Score = 30.8 bits (68), Expect = 2.9 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 7/49 (14%) Frame = +2 Query: 152 TRAKVPP------RSSLHIPWSWLPAALCVLQEVGEEKLV-LDIGQAAL 277 TRA+ P RS L PW W PAAL +LQ E+ D +AAL Sbjct: 217 TRARPPSVGERARRSPLPPPWPWSPAALRLLQRPSEDPAAHADCHRAAL 265
>GLMS_BARHE (Q6G322) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 606 Score = 30.8 bits (68), Expect = 2.9 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Frame = +2 Query: 17 IVKSAIELRKSEIEDGYTEEVSTCRQALLLDVRDKLLFEQEYAGSTRAKVPPRSSLHIPW 196 I+++ +EL+K IEDGYT E T D + + ++ + P+ ++ W Sbjct: 99 IIENFVELQKELIEDGYTFETET----------DTEVIAHLITRALKSGLSPQEAIRTSW 148 Query: 197 SWLPAALCVLQEV-GEEKLVL 256 L A ++ GE+ L++ Sbjct: 149 KRLQGAFAIVVIFEGEDNLMI 169
>SYS1_ENTFA (Q839Q8) Seryl-tRNA synthetase 1 (EC 6.1.1.11) (Serine--tRNA ligase| 1) (SerRS 1) Length = 423 Score = 30.4 bits (67), Expect = 3.7 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Frame = -2 Query: 341 SIQLVPLQEVHREHMA*NQGVVELPDQCPRPAS-LPQPPARHTRQQATSSRVYEERIWAE 165 S QL+ +QEV + +Q VV L +QC A LP P A + E R W+ Sbjct: 70 SQQLLNMQEVSEQIKVLDQEVVHLQEQCTAIAERLPNLPHESVPVGADEAANVEVRRWST 129 Query: 164 PWPWCFLRTP 135 P + F P Sbjct: 130 PKTFSFEPKP 139
>SPTA3_MOUSE (Q9D9T6) Spermatogenesis-associated protein 3 (Testis spermatocyte| apoptosis-related protein 1) (Testis and spermatogenesis cell-related protein 1) (mTSARG1) Length = 193 Score = 30.4 bits (67), Expect = 3.7 Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 10/92 (10%) Frame = -2 Query: 275 ELPDQCPRPA---SLPQPPARHTRQQATSSRVYEERIWAEPWP-------WCFLRTPVQR 126 E P CP PA S PQP T + ++ +P P FL + Sbjct: 33 ETPPSCPEPASPPSKPQPCQESTTPHQVNPEPKPQQHTPQPLPPPEKPASSPFLVPMEPK 92 Query: 125 EACLSRPAAEPVCRWTPPPCTHLRSPISSARW 30 SR AA P+ P C+ P SSA W Sbjct: 93 PILPSRKAAVPLTYVAPRSCSCAACPGSSACW 124
>EPS8_MOUSE (Q08509) Epidermal growth factor receptor kinase substrate 8| Length = 821 Score = 30.4 bits (67), Expect = 3.7 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -2 Query: 278 VELPDQCPRPASLPQPPARHTRQQATSS 195 V LP P P S+P+ PA TRQ ++SS Sbjct: 634 VPLPPSVPAPVSVPKVPADVTRQNSSSS 661
>NMT_AJECA (P34763) Glycylpeptide N-tetradecanoyltransferase (EC 2.3.1.97)| (Peptide N-myristoyltransferase) (Myristoyl-CoA:protein N-myristoyltransferase) (NMT) Length = 529 Score = 30.0 bits (66), Expect = 4.9 Identities = 15/55 (27%), Positives = 34/55 (61%), Gaps = 4/55 (7%) Frame = -2 Query: 515 GLKPLECKLVQALQVILRSAQEEASSLKMVFSSKDIEHVL----EPQSQEILYFF 363 GL+P++ K + A+Q +L + L +FS K+++H+L +P +++I++ + Sbjct: 341 GLRPMQSKDIDAVQDLLNRYLKRFD-LSQIFSRKEVDHLLLHKEKPGAEQIVWSY 394
>CAP2_ARATH (Q8LF20) Putative clathrin assembly protein At2g25430| Length = 653 Score = 30.0 bits (66), Expect = 4.9 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 4/83 (4%) Frame = -2 Query: 284 GVVELPDQCPRPASLPQPPARHTRQQATSSRVY----EERIWAEPWPWCFLRTPVQREAC 117 G VE +Q P ASL PP + + + Y E+++W + + R ++ +A Sbjct: 566 GTVEKVNQDPFAASLTIPPPSYVQMAEMEKKQYLLSQEQQLWQQ-----YQRDGMRGQAS 620 Query: 116 LSRPAAEPVCRWTPPPCTHLRSP 48 L++ PV + PP + P Sbjct: 621 LAKMNTGPVPAYGMPPVNGMGPP 643
>PGK_DESVH (P62412) Phosphoglycerate kinase (EC 2.7.2.3)| Length = 393 Score = 29.6 bits (65), Expect = 6.4 Identities = 20/67 (29%), Positives = 31/67 (46%) Frame = +2 Query: 206 PAALCVLQEVGEEKLVLDIGQAALRRPDSKPYAHDVLLAMALAECSIAKASFEKSKVSLG 385 PA + + EVG ++++LDIG A R ++LLA + +FE + G Sbjct: 273 PATVRKVSEVGPDEMILDIGPATATR------YREILLAAGTIVWNGPVGAFEWEQFGAG 326 Query: 386 FEALARA 406 AL A Sbjct: 327 TRALCEA 333
>PININ_MOUSE (O35691) Pinin| Length = 725 Score = 29.6 bits (65), Expect = 6.4 Identities = 21/84 (25%), Positives = 33/84 (39%) Frame = -2 Query: 320 QEVHREHMA*NQGVVELPDQCPRPASLPQPPARHTRQQATSSRVYEERIWAEPWPWCFLR 141 QEV +E + + P+ P P + PQPP + Q S+ + + Sbjct: 451 QEVEKESEEKEEKEEKEPEPQPEPVAQPQPPPQPLPQSQPHSQPHSQ------------P 498 Query: 140 TPVQREACLSRPAAEPVCRWTPPP 69 PV + L +P P+ PPP Sbjct: 499 QPVLQSQPLCQPETLPLAVLQPPP 522
>CDC7_YEAST (P06243) Cell division control protein 7 (EC 2.7.11.1)| Length = 507 Score = 29.3 bits (64), Expect = 8.3 Identities = 14/43 (32%), Positives = 20/43 (46%) Frame = -2 Query: 275 ELPDQCPRPASLPQPPARHTRQQATSSRVYEERIWAEPWPWCF 147 EL D+ LP P A + Y+E IW++ + WCF Sbjct: 402 ELHDRMSIEPQLPDPKTNMDAVDAYELKKYQEEIWSDHY-WCF 443
>SPTA3_HUMAN (Q8NHX4) Spermatogenesis-associated protein 3 (Testis spermatocyte| apoptosis-related protein 1) (Testis and spermatogenesis cell-related protein 1) Length = 183 Score = 29.3 bits (64), Expect = 8.3 Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 8/86 (9%) Frame = -2 Query: 263 QCPRPASLPQPPARHTRQQATSSRVYEER--IWAEPWP------WCFLRTPVQREACLSR 108 Q P P S PQ P+ + Q +S + A P P C L +A Sbjct: 29 QQPSPESTPQQPSPESTPQHSSLETTSRQPAFQALPAPEIRRSSCCLLSPDANVKAAPQS 88 Query: 107 PAAEPVCRWTPPPCTHLRSPISSARW 30 A P+ R P C+ P SSA W Sbjct: 89 RKAGPLIRAGPHSCSCATCPCSSACW 114 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,905,200 Number of Sequences: 219361 Number of extensions: 1641949 Number of successful extensions: 5076 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4827 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5067 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
