ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah63k03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SM34_LYTPI (Q05904) 34 kDa spicule matrix protein precursor (LSM34) 29 3.5
2BCHN_RHOGE (Q9JPA2) Light-independent protochlorophyllide reduct... 28 4.6
3SYI_SHEON (Q8EBI4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 28 6.0

>SM34_LYTPI (Q05904) 34 kDa spicule matrix protein precursor (LSM34)|
          Length = 335

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 33  FDGQRFGFAXLDPFFQGHQASTDLKPAFGGQK 128
           F GQ+ GF    P F G Q     +P FGG++
Sbjct: 209 FGGQQPGFGGRQPGFGGQQPGFGQQPGFGGRQ 240



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>BCHN_RHOGE (Q9JPA2) Light-independent protochlorophyllide reductase subunit N|
           (EC 1.18.-.-) (LI-POR subunit N) (DPOR subunit N)
          Length = 427

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 212 GVELDLDLDRPCRQLRPEVALCDVAVEHLLTAE 114
           G +L+  LDR CR  RP++ +C + + + L AE
Sbjct: 356 GQDLERQLDR-CRAARPDIVVCGLGLANPLEAE 387



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>SYI_SHEON (Q8EBI4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 940

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
 Frame = +3

Query: 9   TASRRWLLFDGQRFGFAXLDPFFQGHQA---STDLKPAFGGQKVL----DGDVTQSNLRT 167
           TA   W L  GQR  +     ++QG Q+    TDL  A+    +        V +   R 
Sbjct: 773 TADEVWQLLPGQRDAYVFTQEWYQGLQSITLDTDLSDAYWENLLTVRNEVNKVIEQARRD 832

Query: 168 QLAAGAVEVEVKLNA 212
           +   G++E EV L A
Sbjct: 833 KRVGGSLEAEVTLFA 847


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,889,414
Number of Sequences: 219361
Number of extensions: 329294
Number of successful extensions: 1043
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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