Clone Name | bah63k03 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SM34_LYTPI (Q05904) 34 kDa spicule matrix protein precursor (LSM34) | 29 | 3.5 | 2 | BCHN_RHOGE (Q9JPA2) Light-independent protochlorophyllide reduct... | 28 | 4.6 | 3 | SYI_SHEON (Q8EBI4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... | 28 | 6.0 |
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>SM34_LYTPI (Q05904) 34 kDa spicule matrix protein precursor (LSM34)| Length = 335 Score = 28.9 bits (63), Expect = 3.5 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +3 Query: 33 FDGQRFGFAXLDPFFQGHQASTDLKPAFGGQK 128 F GQ+ GF P F G Q +P FGG++ Sbjct: 209 FGGQQPGFGGRQPGFGGQQPGFGQQPGFGGRQ 240
>BCHN_RHOGE (Q9JPA2) Light-independent protochlorophyllide reductase subunit N| (EC 1.18.-.-) (LI-POR subunit N) (DPOR subunit N) Length = 427 Score = 28.5 bits (62), Expect = 4.6 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = -3 Query: 212 GVELDLDLDRPCRQLRPEVALCDVAVEHLLTAE 114 G +L+ LDR CR RP++ +C + + + L AE Sbjct: 356 GQDLERQLDR-CRAARPDIVVCGLGLANPLEAE 387
>SYI_SHEON (Q8EBI4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 940 Score = 28.1 bits (61), Expect = 6.0 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 7/75 (9%) Frame = +3 Query: 9 TASRRWLLFDGQRFGFAXLDPFFQGHQA---STDLKPAFGGQKVL----DGDVTQSNLRT 167 TA W L GQR + ++QG Q+ TDL A+ + V + R Sbjct: 773 TADEVWQLLPGQRDAYVFTQEWYQGLQSITLDTDLSDAYWENLLTVRNEVNKVIEQARRD 832 Query: 168 QLAAGAVEVEVKLNA 212 + G++E EV L A Sbjct: 833 KRVGGSLEAEVTLFA 847 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,889,414 Number of Sequences: 219361 Number of extensions: 329294 Number of successful extensions: 1043 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1030 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1043 length of database: 80,573,946 effective HSP length: 73 effective length of database: 64,560,593 effective search space used: 1549454232 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)