ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah63k01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK111521.1| Oryza sativa (japonica cultivar-group) cDNA clon... 377 e-101
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 137 5e-29
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 137 5e-29
4emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112... 137 5e-29
5emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa... 137 5e-29
6gb|DQ002407.1| Zea mays copia retrotransposon opie1, gypsy retro... 103 7e-19
7ref|NM_100804.2| Arabidopsis thaliana unknown protein AT1G09340 ... 64 6e-07
8gb|AY070022.1| Arabidopsis thaliana putative RNA-binding protein... 64 6e-07
9gb|AY035050.1| Arabidopsis thaliana putative RNA-binding protein... 64 6e-07
10gb|AY062570.1| Arabidopsis thaliana g5bf protein (At1g09340; T31... 64 6e-07
11gb|AF428282.1|AF428282 Arabidopsis thaliana At1g09340/T31J12_6 m... 64 6e-07
12gb|AF325043.2|AF325043 Arabidopsis thaliana At1g09340 (At1g09340... 64 6e-07
13emb|BX815609.1|CNS0ABEP Arabidopsis thaliana Full-length cDNA Co... 64 6e-07
14emb|BX831023.1|CNS09ZFQ Arabidopsis thaliana Full-length cDNA Co... 64 6e-07
15gb|AY087609.1| Arabidopsis thaliana clone 37028 mRNA, complete s... 64 6e-07
16emb|Y15382.1|ATRNABIND Arabidopsis thaliana mRNA for putative RN... 64 6e-07
17emb|Y10557.1|AT55BF Arabidopsis thaliana g5bf mRNA 64 6e-07
18emb|BX815653.1|CNS0ABJP Arabidopsis thaliana Full-length cDNA Co... 60 9e-06
19emb|BX815511.1|CNS0ABD7 Arabidopsis thaliana Full-length cDNA Co... 60 9e-06
20gb|AC122429.3| Mus musculus BAC clone RP24-175I3 from chromosome... 50 0.008
21gb|AC006416.2|T31J12 Arabidopsis thaliana chromosome 1 BAC T31J1... 48 0.034
22gb|AC140284.3| Mus musculus BAC clone RP24-534D6 from 13, comple... 46 0.13
23ref|NM_174190.2| Bos taurus supervillin (SVIL), mRNA 44 0.52
24ref|XM_865721.1| PREDICTED: Bos taurus similar to supervillin is... 44 0.52
25gb|AF439264.1| Haloferax volcanii FtsY NG domain (ftsY) gene, co... 44 0.52
26gb|AC167222.4| Mus musculus 10 BAC RP23-261G3 (Roswell Park Canc... 44 0.52
27gb|AC126263.4| Mus musculus BAC clone RP23-359P12 from chromosom... 44 0.52
28gb|AC011385.6| Homo sapiens chromosome 5 clone CTB-15L17, comple... 44 0.52
29gb|AC113340.2| Homo sapiens chromosome 5 clone CTB-164L20, compl... 44 0.52
30gb|AY187867.1| Haloferax volcanii signal recognition particle re... 44 0.52
31gb|AC012000.3| Homo sapiens BAC clone RP11-398K16 from 2, comple... 44 0.52
32gb|AF025996.1|AF025996 Bos taurus supervillin mRNA, complete cds 44 0.52
33gb|AC147558.3| Mus musculus BAC clone RP23-470N2 from 8, complet... 44 0.52
34gb|AC161166.7| Mus musculus chromosome 7, clone RP23-26A14, comp... 44 0.52
35gb|AF049895.3| Homo sapiens chromosome 8 multiple clones map q21... 42 2.1
36gb|AC138457.3| Mus musculus BAC clone RP23-358E1 from chromosome... 42 2.1
37gb|AC126693.3| Mus musculus BAC clone RP23-247E23 from chromosom... 42 2.1
38gb|AC138312.3| Mus musculus BAC clone RP23-235K7 from chromosome... 42 2.1
39gb|AC005816.6| Mus musculus strain 129/Sv clone ct7-326b16 map 1... 42 2.1
40emb|Z72520.2|HSCN19H5 Human DNA sequence from clone LL22NC03-19H... 42 2.1
41gb|AC010519.8| Homo sapiens chromosome 19 clone LLNLR-261D9, com... 42 2.1
42gb|AC004138.3| Arabidopsis thaliana chromosome 2 clone T17M13 ma... 42 2.1
43gb|AC003062.2| Mouse Chromosome 16 Region Syntenic to DGCR BAC C... 42 2.1
44gb|AC155321.2| Pan troglodytes BAC clone CH251-489N11 from chrom... 42 2.1
45gb|AC108871.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
46dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
47gb|AC154825.2| Mus musculus BAC clone RP24-540E16 from chromosom... 42 2.1
48gb|AC133573.11| Mus musculus strain C57BL/6J clone rp23-139f17, ... 42 2.1
49gb|AC004612.1|AC004612 Homo sapiens PAC clone RP1-318J7 from 8q2... 42 2.1
50gb|AC155271.1| Mus musculus BAC clone RP23-204F12 from 16, compl... 42 2.1
51gb|AC113264.21| Mus musculus strain C57BL/6J chromosome 16 clone... 42 2.1
52gb|AF069291.1|AF069291 Homo sapiens BAC clone 255A7 from 8q21 co... 42 2.1
53gb|AF068862.1|AF068862 Homo sapiens BAC clone 157K21 from 8q21, ... 42 2.1
54gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
55emb|AL132988.4|CNS01DTW Human chromosome 14 DNA sequence BAC R-3... 42 2.1
56emb|AL731700.12| Mouse DNA sequence from clone RP23-239G1 on chr... 42 2.1
57emb|AL607032.16| Mouse DNA sequence from clone RP23-15L19 on chr... 42 2.1
58gb|AC132108.4| Mus musculus BAC clone RP24-257B11 from chromosom... 40 8.2
59gb|AC119190.7| Mus musculus chromosome 8, clone RP24-178B9, comp... 40 8.2
60ref|XM_656833.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 8.2
61gb|AC162613.2| Mus musculus chromosome 19, clone RP24-270E10, co... 40 8.2
62gb|AC124721.4| Mus musculus chromosome 10 clone RP23-387G19, com... 40 8.2
63gb|AC092482.71| Mus musculus strain C57BL/6J clone rp23-60j11, c... 40 8.2
64emb|X85323.1|HSCAG24 H.sapiens mRNA for non polymorphic CAG repe... 40 8.2
65gb|AC111048.8| Mus musculus chromosome 19, clone RP23-355N22, co... 40 8.2
66ref|XM_500190.1| Yarrowia lipolytica CLIB122, YALI0A18161g predi... 40 8.2
67emb|AL137787.11| Human DNA sequence from clone RP5-1070B1 on chr... 40 8.2
68emb|AL031687.17|HS998H6 Human DNA sequence from clone RP5-998H6 ... 40 8.2
69gb|AC103018.7| Rattus norvegicus 1 CH230-196F22 (Children's Hosp... 40 8.2
70emb|BX571661.1| Wolinella succinogenes, complete genome; segment... 40 8.2
71gb|AY160770.1| Rattus norvegicus inositol 1,4,5-trisphosphate 3-... 40 8.2
72emb|AL845333.3| Mouse DNA sequence from clone RP23-245E19 on chr... 40 8.2
73gb|AC007623.33| Homo sapiens 12 BAC RP11-608E13 (Roswell Park Ca... 40 8.2
74gb|AC024585.6| Homo sapiens chromosome 19 clone LLNLF-194E9, com... 40 8.2
75ref|XM_937007.1| PREDICTED: Homo sapiens KIAA1817 protein (KIAA1... 40 8.2
76ref|XM_042978.5| PREDICTED: Homo sapiens KIAA1817 protein (KIAA1... 40 8.2
77gb|AC090427.2| Homo sapiens chromosome 19 clone CTD-2292J18, com... 40 8.2
78gb|AC007582.7| Drosophila melanogaster, chromosome 2R, region 60... 40 8.2
79gb|AC160337.2| Mus musculus BAC clone RP23-193N1 from chromosome... 40 8.2
80gb|AC010890.9| Homo sapiens BAC clone RP11-449L24 from 2, comple... 40 8.2
81ref|NM_178094.2| Rattus norvegicus inositol 1,4,5-trisphosphate ... 40 8.2
82gb|AC022149.3|AC022149 Homo sapiens chromosome 19 clone CTD-3093... 40 8.2
83emb|AL929317.13| Mouse DNA sequence from clone RP23-239F11 on ch... 40 8.2
84emb|AL672020.5| Mouse DNA sequence from clone RP23-185A3 on chro... 40 8.2
85emb|AJ440782.1|RNO440782 Rattus norvegicus mRNA for inositol 1,4... 40 8.2
86emb|Z28306.1|SCYKR081C S.cerevisiae chromosome XI reading frame ... 40 8.2
87emb|Z27116.1|SCUNORF1 S.cerevisiae HBS1, MRP-L20 and PRP-16 genes 40 8.2
88gb|AE003466.2| Drosophila melanogaster chromosome 2R, section 73... 40 8.2
89gb|DQ331493.1| Synthetic construct Saccharomyces cerevisiae clon... 40 8.2
90gb|AC097355.15| Mus musculus strain C57BL/6J chromosome 2 clone ... 40 8.2
91gb|AE000512.1| Thermotoga maritima MSB8, complete genome 40 8.2
92emb|AL928876.12| Mouse DNA sequence from clone RP23-236O6 on chr... 40 8.2
93emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 40 8.2
94dbj|AP006378.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 8.2
95emb|AL606903.8| Mouse DNA sequence from clone RP23-278I3 on chro... 40 8.2
96emb|AL929137.5| Mouse DNA sequence from clone RP23-412L18 on chr... 40 8.2
97dbj|AB058720.1| Homo sapiens mRNA for KIAA1817 protein, partial cds 40 8.2
98emb|AL627252.16| Mouse DNA sequence from clone RP23-272P17 on ch... 40 8.2 
>dbj|AK111521.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M10, full
           insert sequence
          Length = 1479

 Score =  377 bits (190), Expect = e-101
 Identities = 400/470 (85%)
 Strand = Plus / Plus

                                                                       
Query: 132 tctccatctcagcccagaataggagacggtcatggcagccgaggggggcgagaatgcagg 191
           ||||||||||| |||||  ||||||  ||||||||||||| |||||||| || |||||||
Sbjct: 166 tctccatctcaacccaggctaggaggaggtcatggcagccaaggggggcaaggatgcagg 225

                                                                       
Query: 192 tggcagcagctgcagactccaagaacattctgatcatggggggcacgaggttcattggtc 251
           | |||||||||||||||||||||||||||||  | |||||||| || |||||||||||| 
Sbjct: 226 tagcagcagctgcagactccaagaacattcttgtgatggggggaaccaggttcattggtg 285

                                                                       
Query: 252 tcttcctgtccaggaaacttgtccaggagggacaccaggtcacattgttcaccagaggaa 311
           ||||| ||||||||   |||||| ||||||| |||||||||||||||||||| |||||||
Sbjct: 286 tcttcttgtccaggctccttgtcaaggaggggcaccaggtcacattgttcactagaggaa 345

                                                                       
Query: 312 aggcacccataacccagcagttgccaggtgaatcagatgcagagtatgcagagttctctt 371
           |||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 346 aggcccccattacccagcagttgccaggagagtcagatgcagagtatgcagagttctctt 405

                                                                       
Query: 372 ccaaggtgctgcatttgaaaggtgataggaaagactttgatttcgtcaagaccagccttt 431
           | |||||| |||| ||||||||||| ||| |||||||||||||||| ||||| |||||| 
Sbjct: 406 caaaggtgttgcacttgaaaggtgacaggcaagactttgatttcgttaagacaagccttg 465

                                                                       
Query: 432 ctgctaagggctttaatgtcgtctatgatattaatggacgcgaggccactgaagtatccc 491
           | || ||||||||  |||| || || || || || ||  | || ||   ||| ||| |||
Sbjct: 466 cggcaaagggcttcgatgttgtttacgacataaacgggagagaagctgttgaggtagccc 525

                                                                       
Query: 492 ccatactagaagcgttgccaaacctggaacagtttatctattgctcatcggcaggagtct 551
           | || ||||| || ||||| ||||| |||||||  ||||| |||||||| |||||||| |
Sbjct: 526 caatcctagacgcattgccgaaccttgaacagtacatctactgctcatcagcaggagtgt 585

                                                             
Query: 552 accttaagtcagacctgctcccacactttgagaccgacgctgtggacccg 601
           |||| || |||||||||||||| ||||| ||||||||||| || ||||||
Sbjct: 586 acctgaaatcagacctgctcccgcacttcgagaccgacgccgtcgacccg 635
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  137 bits (69), Expect = 5e-29
 Identities = 117/133 (87%)
 Strand = Plus / Plus

                                                                            
Query: 159      ggtcatggcagccgaggggggcgagaatgcaggtggcagcagctgcagactccaagaaca 218
                ||||||||||||| |||||||| || |||||||| |||||||||||||||||||||||||
Sbjct: 13148282 ggtcatggcagccaaggggggcaaggatgcaggtagcagcagctgcagactccaagaaca 13148341

                                                                            
Query: 219      ttctgatcatggggggcacgaggttcattggtctcttcctgtccaggaaacttgtccagg 278
                ||||  | |||||||| || |||||||||||| ||||| ||||||||   |||||| |||
Sbjct: 13148342 ttcttgtgatggggggaaccaggttcattggtgtcttcttgtccaggctccttgtcaagg 13148401

                             
Query: 279      agggacaccaggt 291
                |||| ||||||||
Sbjct: 13148402 aggggcaccaggt 13148414



 Score =  135 bits (68), Expect = 2e-28
 Identities = 86/92 (93%)
 Strand = Plus / Plus

                                                                            
Query: 288      aggtcacattgttcaccagaggaaaggcacccataacccagcagttgccaggtgaatcag 347
                |||||||||||||||| ||||||||||| ||||| ||||||||||||||||| || ||||
Sbjct: 13148507 aggtcacattgttcactagaggaaaggcccccattacccagcagttgccaggagagtcag 13148566

                                                
Query: 348      atgcagagtatgcagagttctcttccaaggtg 379
                ||||||||||||||||||||||||| ||||||
Sbjct: 13148567 atgcagagtatgcagagttctcttcaaaggtg 13148598



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                            
Query: 375      aggtgctgcatttgaaaggtgataggaaagactttgatttcgtcaagaccagcctttctg 434
                ||||| |||| ||||||||||| ||| |||||||||||||||| ||||| |||||| | |
Sbjct: 13148839 aggtgttgcacttgaaaggtgacaggcaagactttgatttcgttaagacaagccttgcgg 13148898

                          
Query: 435      ctaagggctt 444
                | ||||||||
Sbjct: 13148899 caaagggctt 13148908



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                     
Query: 527      atctattgctcatcggcaggagtctaccttaagtcagacctgctcccacactt 579
                ||||| |||||||| |||||||| ||||| || |||||||||||||| |||||
Sbjct: 13149296 atctactgctcatcagcaggagtgtacctgaaatcagacctgctcccgcactt 13149348
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  137 bits (69), Expect = 5e-29
 Identities = 117/133 (87%)
 Strand = Plus / Plus

                                                                            
Query: 159      ggtcatggcagccgaggggggcgagaatgcaggtggcagcagctgcagactccaagaaca 218
                ||||||||||||| |||||||| || |||||||| |||||||||||||||||||||||||
Sbjct: 13102556 ggtcatggcagccaaggggggcaaggatgcaggtagcagcagctgcagactccaagaaca 13102615

                                                                            
Query: 219      ttctgatcatggggggcacgaggttcattggtctcttcctgtccaggaaacttgtccagg 278
                ||||  | |||||||| || |||||||||||| ||||| ||||||||   |||||| |||
Sbjct: 13102616 ttcttgtgatggggggaaccaggttcattggtgtcttcttgtccaggctccttgtcaagg 13102675

                             
Query: 279      agggacaccaggt 291
                |||| ||||||||
Sbjct: 13102676 aggggcaccaggt 13102688



 Score =  135 bits (68), Expect = 2e-28
 Identities = 86/92 (93%)
 Strand = Plus / Plus

                                                                            
Query: 288      aggtcacattgttcaccagaggaaaggcacccataacccagcagttgccaggtgaatcag 347
                |||||||||||||||| ||||||||||| ||||| ||||||||||||||||| || ||||
Sbjct: 13102781 aggtcacattgttcactagaggaaaggcccccattacccagcagttgccaggagagtcag 13102840

                                                
Query: 348      atgcagagtatgcagagttctcttccaaggtg 379
                ||||||||||||||||||||||||| ||||||
Sbjct: 13102841 atgcagagtatgcagagttctcttcaaaggtg 13102872



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                            
Query: 375      aggtgctgcatttgaaaggtgataggaaagactttgatttcgtcaagaccagcctttctg 434
                ||||| |||| ||||||||||| ||| |||||||||||||||| ||||| |||||| | |
Sbjct: 13103113 aggtgttgcacttgaaaggtgacaggcaagactttgatttcgttaagacaagccttgcgg 13103172

                          
Query: 435      ctaagggctt 444
                | ||||||||
Sbjct: 13103173 caaagggctt 13103182



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                     
Query: 527      atctattgctcatcggcaggagtctaccttaagtcagacctgctcccacactt 579
                ||||| |||||||| |||||||| ||||| || |||||||||||||| |||||
Sbjct: 13103569 atctactgctcatcagcaggagtgtacctgaaatcagacctgctcccgcactt 13103621
to top
>emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112_F01 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 193499

 Score =  137 bits (69), Expect = 5e-29
 Identities = 117/133 (87%)
 Strand = Plus / Minus

                                                                          
Query: 159    ggtcatggcagccgaggggggcgagaatgcaggtggcagcagctgcagactccaagaaca 218
              ||||||||||||| |||||||| || |||||||| |||||||||||||||||||||||||
Sbjct: 182461 ggtcatggcagccaaggggggcaaggatgcaggtagcagcagctgcagactccaagaaca 182402

                                                                          
Query: 219    ttctgatcatggggggcacgaggttcattggtctcttcctgtccaggaaacttgtccagg 278
              ||||  | |||||||| || |||||||||||| ||||| ||||||||   |||||| |||
Sbjct: 182401 ttcttgtgatggggggaaccaggttcattggtgtcttcttgtccaggctccttgtcaagg 182342

                           
Query: 279    agggacaccaggt 291
              |||| ||||||||
Sbjct: 182341 aggggcaccaggt 182329



 Score =  135 bits (68), Expect = 2e-28
 Identities = 86/92 (93%)
 Strand = Plus / Minus

                                                                          
Query: 288    aggtcacattgttcaccagaggaaaggcacccataacccagcagttgccaggtgaatcag 347
              |||||||||||||||| ||||||||||| ||||| ||||||||||||||||| || ||||
Sbjct: 182236 aggtcacattgttcactagaggaaaggcccccattacccagcagttgccaggagagtcag 182177

                                              
Query: 348    atgcagagtatgcagagttctcttccaaggtg 379
              ||||||||||||||||||||||||| ||||||
Sbjct: 182176 atgcagagtatgcagagttctcttcaaaggtg 182145



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                          
Query: 375    aggtgctgcatttgaaaggtgataggaaagactttgatttcgtcaagaccagcctttctg 434
              ||||| |||| ||||||||||| ||| |||||||||||||||| ||||| |||||| | |
Sbjct: 181904 aggtgttgcacttgaaaggtgacaggcaagactttgatttcgttaagacaagccttgcgg 181845

                        
Query: 435    ctaagggctt 444
              | ||||||||
Sbjct: 181844 caaagggctt 181835



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                   
Query: 527    atctattgctcatcggcaggagtctaccttaagtcagacctgctcccacactt 579
              ||||| |||||||| |||||||| ||||| || |||||||||||||| |||||
Sbjct: 181448 atctactgctcatcagcaggagtgtacctgaaatcagacctgctcccgcactt 181396
to top
>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 178827

 Score =  137 bits (69), Expect = 5e-29
 Identities = 117/133 (87%)
 Strand = Plus / Plus

                                                                          
Query: 159    ggtcatggcagccgaggggggcgagaatgcaggtggcagcagctgcagactccaagaaca 218
              ||||||||||||| |||||||| || |||||||| |||||||||||||||||||||||||
Sbjct: 137485 ggtcatggcagccaaggggggcaaggatgcaggtagcagcagctgcagactccaagaaca 137544

                                                                          
Query: 219    ttctgatcatggggggcacgaggttcattggtctcttcctgtccaggaaacttgtccagg 278
              ||||  | |||||||| || |||||||||||| ||||| ||||||||   |||||| |||
Sbjct: 137545 ttcttgtgatggggggaaccaggttcattggtgtcttcttgtccaggctccttgtcaagg 137604

                           
Query: 279    agggacaccaggt 291
              |||| ||||||||
Sbjct: 137605 aggggcaccaggt 137617



 Score =  135 bits (68), Expect = 2e-28
 Identities = 86/92 (93%)
 Strand = Plus / Plus

                                                                          
Query: 288    aggtcacattgttcaccagaggaaaggcacccataacccagcagttgccaggtgaatcag 347
              |||||||||||||||| ||||||||||| ||||| ||||||||||||||||| || ||||
Sbjct: 137710 aggtcacattgttcactagaggaaaggcccccattacccagcagttgccaggagagtcag 137769

                                              
Query: 348    atgcagagtatgcagagttctcttccaaggtg 379
              ||||||||||||||||||||||||| ||||||
Sbjct: 137770 atgcagagtatgcagagttctcttcaaaggtg 137801



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                          
Query: 375    aggtgctgcatttgaaaggtgataggaaagactttgatttcgtcaagaccagcctttctg 434
              ||||| |||| ||||||||||| ||| |||||||||||||||| ||||| |||||| | |
Sbjct: 138042 aggtgttgcacttgaaaggtgacaggcaagactttgatttcgttaagacaagccttgcgg 138101

                        
Query: 435    ctaagggctt 444
              | ||||||||
Sbjct: 138102 caaagggctt 138111



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                   
Query: 527    atctattgctcatcggcaggagtctaccttaagtcagacctgctcccacactt 579
              ||||| |||||||| |||||||| ||||| || |||||||||||||| |||||
Sbjct: 138499 atctactgctcatcagcaggagtgtacctgaaatcagacctgctcccgcactt 138551
to top
>gb|DQ002407.1| Zea mays copia retrotransposon opie1, gypsy retrotransposon grande1,
             xilon1 retrotransposon, helitron B73_14578, gypsy
             retrotransposon huck1 and ruda retrotransposon, complete
             sequence
          Length = 152384

 Score =  103 bits (52), Expect = 7e-19
 Identities = 103/120 (85%)
 Strand = Plus / Minus

                                                                         
Query: 174   ggggggcgagaatgcaggtggcagcagctgcagactccaagaacattctgatcatggggg 233
             ||||||||||  |||||||  |||| ||||| |||||||||||||||||| |||||||||
Sbjct: 24037 ggggggcgagggtgcaggtctcagcggctgcggactccaagaacattctggtcatggggg 23978

                                                                         
Query: 234   gcacgaggttcattggtctcttcctgtccaggaaacttgtccaggagggacaccaggtca 293
             | || |||||||| ||  ||||||||||||||   |||||| ||||||| ||||||||||
Sbjct: 23977 ggactaggttcatcggggtcttcctgtccaggctccttgtcaaggagggccaccaggtca 23918



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 82/93 (88%)
 Strand = Plus / Minus

                                                                         
Query: 287   caggtcacattgttcaccagaggaaaggcacccataacccagcagttgccaggtgaatca 346
             |||||||||||||||||||| ||||||||||||||||| |||||| ||||||| || || 
Sbjct: 23818 caggtcacattgttcaccaggggaaaggcacccataactcagcagctgccaggggagtcc 23759

                                              
Query: 347   gatgcagagtatgcagagttctcttccaaggtg 379
             || || ||||| ||||| ||||| |||||||||
Sbjct: 23758 gacgcggagtacgcagacttctcctccaaggtg 23726



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 527   atctattgctcatcggcaggagtctacct 555
             ||||||||||||||||||||||| |||||
Sbjct: 21080 atctattgctcatcggcaggagtgtacct 21052
to top
>ref|NM_100804.2| Arabidopsis thaliana unknown protein AT1G09340 mRNA, complete cds
          Length = 1423

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                       
Query: 212 aagaacattctgatcatggggggcacgaggttcattggtctcttcctgtccaggaaactt 271
           ||||| |||||||| ||||| || ||  | ||||||||||| ||| |||||||||  |||
Sbjct: 247 aagaagattctgataatgggtggtactcgattcattggtctgttcttgtccaggatcctt 306

                                           
Query: 272 gtccaggagggacaccaggtcacattgttcac 303
           ||| | |||||||| ||||| |||||||||||
Sbjct: 307 gtcaaagagggacatcaggttacattgttcac 338
to top
>gb|AY070022.1| Arabidopsis thaliana putative RNA-binding protein (At1g09340) mRNA,
           complete cds
          Length = 1168

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                       
Query: 212 aagaacattctgatcatggggggcacgaggttcattggtctcttcctgtccaggaaactt 271
           ||||| |||||||| ||||| || ||  | ||||||||||| ||| |||||||||  |||
Sbjct: 160 aagaagattctgataatgggtggtactcgattcattggtctgttcttgtccaggatcctt 219

                                           
Query: 272 gtccaggagggacaccaggtcacattgttcac 303
           ||| | |||||||| ||||| |||||||||||
Sbjct: 220 gtcaaagagggacatcaggttacattgttcac 251
to top
>gb|AY035050.1| Arabidopsis thaliana putative RNA-binding protein (At1g09340) mRNA,
           complete cds
          Length = 1448

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                       
Query: 212 aagaacattctgatcatggggggcacgaggttcattggtctcttcctgtccaggaaactt 271
           ||||| |||||||| ||||| || ||  | ||||||||||| ||| |||||||||  |||
Sbjct: 234 aagaagattctgataatgggtggtactcgattcattggtctgttcttgtccaggatcctt 293

                                           
Query: 272 gtccaggagggacaccaggtcacattgttcac 303
           ||| | |||||||| ||||| |||||||||||
Sbjct: 294 gtcaaagagggacatcaggttacattgttcac 325
to top
>gb|AY062570.1| Arabidopsis thaliana g5bf protein (At1g09340; T31J12.6) mRNA,
           complete cds
          Length = 1228

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                       
Query: 212 aagaacattctgatcatggggggcacgaggttcattggtctcttcctgtccaggaaactt 271
           ||||| |||||||| ||||| || ||  | ||||||||||| ||| |||||||||  |||
Sbjct: 172 aagaagattctgataatgggtggtactcgattcattggtctgttcttgtccaggatcctt 231

                                           
Query: 272 gtccaggagggacaccaggtcacattgttcac 303
           ||| | |||||||| ||||| |||||||||||
Sbjct: 232 gtcaaagagggacatcaggttacattgttcac 263
to top
>gb|AF428282.1|AF428282 Arabidopsis thaliana At1g09340/T31J12_6 mRNA, complete cds
          Length = 1234

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                       
Query: 212 aagaacattctgatcatggggggcacgaggttcattggtctcttcctgtccaggaaactt 271
           ||||| |||||||| ||||| || ||  | ||||||||||| ||| |||||||||  |||
Sbjct: 177 aagaagattctgataatgggtggtactcgattcattggtctgttcttgtccaggatcctt 236

                                           
Query: 272 gtccaggagggacaccaggtcacattgttcac 303
           ||| | |||||||| ||||| |||||||||||
Sbjct: 237 gtcaaagagggacatcaggttacattgttcac 268
to top
>gb|AF325043.2|AF325043 Arabidopsis thaliana At1g09340 (At1g09340/T31J12_6) mRNA, complete
           cds
          Length = 1310

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                       
Query: 212 aagaacattctgatcatggggggcacgaggttcattggtctcttcctgtccaggaaactt 271
           ||||| |||||||| ||||| || ||  | ||||||||||| ||| |||||||||  |||
Sbjct: 164 aagaagattctgataatgggtggtactcgattcattggtctgttcttgtccaggatcctt 223

                                           
Query: 272 gtccaggagggacaccaggtcacattgttcac 303
           ||| | |||||||| ||||| |||||||||||
Sbjct: 224 gtcaaagagggacatcaggttacattgttcac 255
to top
>emb|BX815609.1|CNS0ABEP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS77ZE10 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1328

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                       
Query: 212 aagaacattctgatcatggggggcacgaggttcattggtctcttcctgtccaggaaactt 271
           ||||| |||||||| ||||| || ||  | ||||||||||| ||| |||||||||  |||
Sbjct: 228 aagaagattctgataatgggtggtactcgattcattggtctgttcttgtccaggatcctt 287

                                           
Query: 272 gtccaggagggacaccaggtcacattgttcac 303
           ||| | |||||||| ||||| |||||||||||
Sbjct: 288 gtcaaagagggacatcaggttacattgttcac 319
to top
>emb|BX831023.1|CNS09ZFQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS4ZG05 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1259

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                       
Query: 212 aagaacattctgatcatggggggcacgaggttcattggtctcttcctgtccaggaaactt 271
           ||||| |||||||| ||||| || ||  | ||||||||||| ||| |||||||||  |||
Sbjct: 158 aagaagattctgataatgggtggtactcgattcattggtctgttcttgtccaggatcctt 217

                                           
Query: 272 gtccaggagggacaccaggtcacattgttcac 303
           ||| | |||||||| ||||| |||||||||||
Sbjct: 218 gtcaaagagggacatcaggttacattgttcac 249
to top
>gb|AY087609.1| Arabidopsis thaliana clone 37028 mRNA, complete sequence
          Length = 1337

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                       
Query: 212 aagaacattctgatcatggggggcacgaggttcattggtctcttcctgtccaggaaactt 271
           ||||| |||||||| ||||| || ||  | ||||||||||| ||| |||||||||  |||
Sbjct: 248 aagaagattctgataatgggtggtactcgattcattggtctgttcttgtccaggatcctt 307

                                           
Query: 272 gtccaggagggacaccaggtcacattgttcac 303
           ||| | |||||||| ||||| |||||||||||
Sbjct: 308 gtcaaagagggacatcaggttacattgttcac 339
to top
>emb|Y15382.1|ATRNABIND Arabidopsis thaliana mRNA for putative RNA binding protein
          Length = 1291

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                       
Query: 212 aagaacattctgatcatggggggcacgaggttcattggtctcttcctgtccaggaaactt 271
           ||||| |||||||| ||||| || ||  | ||||||||||| ||| |||||||||  |||
Sbjct: 176 aagaagattctgataatgggtggtactcgattcattggtctgttcttgtccaggatcctt 235

                                           
Query: 272 gtccaggagggacaccaggtcacattgttcac 303
           ||| | |||||||| ||||| |||||||||||
Sbjct: 236 gtcaaagagggacatcaggttacattgttcac 267
to top
>emb|Y10557.1|AT55BF Arabidopsis thaliana g5bf mRNA
          Length = 1253

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                       
Query: 212 aagaacattctgatcatggggggcacgaggttcattggtctcttcctgtccaggaaactt 271
           ||||| |||||||| ||||| || ||  | ||||||||||| ||| |||||||||  |||
Sbjct: 177 aagaagattctgataatgggtggtactcgattcattggtctgttcttgtccaggatcctt 236

                                           
Query: 272 gtccaggagggacaccaggtcacattgttcac 303
           ||| | |||||||| ||||| |||||||||||
Sbjct: 237 gtcaaagagggacatcaggttacattgttcac 268
to top
>emb|BX815653.1|CNS0ABJP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS7ZH07 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1300

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 242 ttcattggtctcttcctgtccaggaaacttgtccaggagggacaccaggtcacattgttc 301
           ||||||||||| ||| |||||||||  |||||| | |||||||| ||||| |||||||||
Sbjct: 257 ttcattggtctgttcttgtccaggatccttgtcaaagagggacatcaggttacattgttc 316

             
Query: 302 ac 303
           ||
Sbjct: 317 ac 318
to top
>emb|BX815511.1|CNS0ABD7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS69ZB12 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1245

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 242 ttcattggtctcttcctgtccaggaaacttgtccaggagggacaccaggtcacattgttc 301
           ||||||||||| ||| |||||||||  |||||| | |||||||| ||||| |||||||||
Sbjct: 253 ttcattggtctgttcttgtccaggatccttgtcaaagagggacatcaggttacattgttc 312

             
Query: 302 ac 303
           ||
Sbjct: 313 ac 314
to top
>gb|AC122429.3| Mus musculus BAC clone RP24-175I3 from chromosome 6, complete sequence
          Length = 188069

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 31    ggaggggacagagaagggaagagag 55
             |||||||||||||||||||||||||
Sbjct: 80522 ggaggggacagagaagggaagagag 80498
to top
>gb|AC006416.2|T31J12 Arabidopsis thaliana chromosome 1 BAC T31J12 sequence, complete
             sequence
          Length = 16549

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 66/80 (82%)
 Strand = Plus / Plus

                                                                         
Query: 212   aagaacattctgatcatggggggcacgaggttcattggtctcttcctgtccaggaaactt 271
             ||||| |||||||| ||||| || ||  | ||||||||||| ||| |||||||||  |||
Sbjct: 14044 aagaagattctgataatgggtggtactcgattcattggtctgttcttgtccaggatcctt 14103

                                 
Query: 272   gtccaggagggacaccaggt 291
             ||| | |||||||| |||||
Sbjct: 14104 gtcaaagagggacatcaggt 14123
to top
>gb|AC140284.3| Mus musculus BAC clone RP24-534D6 from 13, complete sequence
          Length = 186444

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 32     gaggggacagagaagggaagaga 54
              |||||||||||||||||||||||
Sbjct: 100800 gaggggacagagaagggaagaga 100822
to top
>ref|NM_174190.2| Bos taurus supervillin (SVIL), mRNA
          Length = 6461

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 72   tctccctgaagagcagcctctt 93
            ||||||||||||||||||||||
Sbjct: 1136 tctccctgaagagcagcctctt 1115
to top
>ref|XM_865721.1| PREDICTED: Bos taurus similar to supervillin isoform 2 (LOC614278),
            mRNA
          Length = 3852

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 72   tctccctgaagagcagcctctt 93
            ||||||||||||||||||||||
Sbjct: 2548 tctccctgaagagcagcctctt 2527
to top
>gb|AF439264.1| Haloferax volcanii FtsY NG domain (ftsY) gene, complete cds
          Length = 801

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 118 cggcggcgcggccatctccatc 139
           ||||||||||||||||||||||
Sbjct: 666 cggcggcgcggccatctccatc 687
to top
>gb|AC167222.4| Mus musculus 10 BAC RP23-261G3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 198762

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 243   tcattggtctcttcctgtccag 264
             ||||||||||||||||||||||
Sbjct: 64372 tcattggtctcttcctgtccag 64393
to top
>gb|AC126263.4| Mus musculus BAC clone RP23-359P12 from chromosome 8, complete sequence
          Length = 223991

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 31     ggaggggacagagaagggaagagaga 56
              |||||||| |||||||||||||||||
Sbjct: 201191 ggaggggagagagaagggaagagaga 201216
to top
>gb|AC011385.6| Homo sapiens chromosome 5 clone CTB-15L17, complete sequence
          Length = 134599

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 32   gaggggacagagaagggaagag 53
            ||||||||||||||||||||||
Sbjct: 9039 gaggggacagagaagggaagag 9060
to top
>gb|AC113340.2| Homo sapiens chromosome 5 clone CTB-164L20, complete sequence
          Length = 84791

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 32    gaggggacagagaagggaagag 53
             ||||||||||||||||||||||
Sbjct: 13944 gaggggacagagaagggaagag 13965
to top
>gb|AY187867.1| Haloferax volcanii signal recognition particle receptor-like protein
            (ftsY) gene, complete cds
          Length = 1371

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 118  cggcggcgcggccatctccatc 139
            ||||||||||||||||||||||
Sbjct: 1236 cggcggcgcggccatctccatc 1257
to top
>gb|AC012000.3| Homo sapiens BAC clone RP11-398K16 from 2, complete sequence
          Length = 194472

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 31     ggaggggacagagaagggaagagaga 56
              ||||||||||||||| ||||||||||
Sbjct: 144981 ggaggggacagagaaaggaagagaga 145006
to top
>gb|AF025996.1|AF025996 Bos taurus supervillin mRNA, complete cds
          Length = 6461

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 72   tctccctgaagagcagcctctt 93
            ||||||||||||||||||||||
Sbjct: 1136 tctccctgaagagcagcctctt 1115
to top
>gb|AC147558.3| Mus musculus BAC clone RP23-470N2 from 8, complete sequence
          Length = 212626

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 31     ggaggggacagagaagggaagagaga 56
              |||||||| |||||||||||||||||
Sbjct: 162482 ggaggggagagagaagggaagagaga 162457
to top
>gb|AC161166.7| Mus musculus chromosome 7, clone RP23-26A14, complete sequence
          Length = 250028

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 33     aggggacagagaagggaagaga 54
              ||||||||||||||||||||||
Sbjct: 188702 aggggacagagaagggaagaga 188723
to top
>gb|AF049895.3| Homo sapiens chromosome 8 multiple clones map q21.3, complete sequence
          Length = 331864

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 36    ggacagagaagggaagagaga 56
             |||||||||||||||||||||
Sbjct: 93741 ggacagagaagggaagagaga 93721
to top
>gb|AC138457.3| Mus musculus BAC clone RP23-358E1 from chromosome 19, complete sequence
          Length = 237854

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 29     agggaggggacagagaaggga 49
              |||||||||||||||||||||
Sbjct: 118260 agggaggggacagagaaggga 118240
to top
>gb|AC126693.3| Mus musculus BAC clone RP23-247E23 from chromosome 16, complete
             sequence
          Length = 199505

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 33    aggggacagagaagggaagag 53
             |||||||||||||||||||||
Sbjct: 23500 aggggacagagaagggaagag 23520
to top
>gb|AC138312.3| Mus musculus BAC clone RP23-235K7 from chromosome 9, complete sequence
          Length = 176504

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 33    aggggacagagaagggaagag 53
             |||||||||||||||||||||
Sbjct: 45439 aggggacagagaagggaagag 45459
to top
>gb|AC005816.6| Mus musculus strain 129/Sv clone ct7-326b16 map 16, complete sequence
          Length = 136687

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 32    gaggggacagagaagggaagagaga 56
             ||||||||||||||||| |||||||
Sbjct: 97570 gaggggacagagaaggggagagaga 97546
to top
>emb|Z72520.2|HSCN19H5 Human DNA sequence from clone LL22NC03-19H5 on chromosome 22 Contains
             an EST and a GSS, complete sequence
          Length = 30113

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 39    cagagaagggaagagagatgg 59
             |||||||||||||||||||||
Sbjct: 12752 cagagaagggaagagagatgg 12772
to top
>gb|AC010519.8| Homo sapiens chromosome 19 clone LLNLR-261D9, complete sequence
          Length = 46741

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    cagggaggggacagagaaggg 48
             |||||||||||||||||||||
Sbjct: 40543 cagggaggggacagagaaggg 40523
to top
>gb|AC004138.3| Arabidopsis thaliana chromosome 2 clone T17M13 map CIC11A04, complete
             sequence
          Length = 104016

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 32    gaggggacagagaagggaagagaga 56
             ||||||| |||||||||||||||||
Sbjct: 84814 gaggggagagagaagggaagagaga 84790
to top
>gb|AC003062.2| Mouse Chromosome 16 Region Syntenic to DGCR BAC Clone b264n1, complete
             sequence
          Length = 89743

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 32    gaggggacagagaagggaagagaga 56
             ||||||||||||||||| |||||||
Sbjct: 18595 gaggggacagagaaggggagagaga 18571
to top
>gb|AC155321.2| Pan troglodytes BAC clone CH251-489N11 from chromosome unknown,
             complete sequence
          Length = 202104

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 39    cagagaagggaagagagatgg 59
             |||||||||||||||||||||
Sbjct: 77954 cagagaagggaagagagatgg 77934
to top
>gb|AC108871.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBb0077M24, complete sequence
          Length = 128920

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 89     ctcttcctgtcttcccccctt 109
              |||||||||||||||||||||
Sbjct: 117366 ctcttcctgtcttcccccctt 117346
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 89       ctcttcctgtcttcccccctt 109
                |||||||||||||||||||||
Sbjct: 20682358 ctcttcctgtcttcccccctt 20682338
to top
>gb|AC154825.2| Mus musculus BAC clone RP24-540E16 from chromosome 16, complete
             sequence
          Length = 202988

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 33    aggggacagagaagggaagag 53
             |||||||||||||||||||||
Sbjct: 10399 aggggacagagaagggaagag 10379
to top
>gb|AC133573.11| Mus musculus strain C57BL/6J clone rp23-139f17, complete sequence
          Length = 224138

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 32     gaggggacagagaagggaagagaga 56
              ||||||||||||||||| |||||||
Sbjct: 115188 gaggggacagagaaggggagagaga 115212
to top
>gb|AC004612.1|AC004612 Homo sapiens PAC clone RP1-318J7 from 8q21, complete sequence
          Length = 88295

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 36    ggacagagaagggaagagaga 56
             |||||||||||||||||||||
Sbjct: 48666 ggacagagaagggaagagaga 48646
to top
>gb|AC155271.1| Mus musculus BAC clone RP23-204F12 from 16, complete sequence
          Length = 204679

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 33    aggggacagagaagggaagag 53
             |||||||||||||||||||||
Sbjct: 50566 aggggacagagaagggaagag 50586
to top
>gb|AC113264.21| Mus musculus strain C57BL/6J chromosome 16 clone rp23-357j7, complete
              sequence
          Length = 222589

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 32     gaggggacagagaagggaagagaga 56
              ||||||||||||||||| |||||||
Sbjct: 112639 gaggggacagagaaggggagagaga 112615
to top
>gb|AF069291.1|AF069291 Homo sapiens BAC clone 255A7 from 8q21 containing NBS1 gene, complete
              sequence
          Length = 184919

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 36     ggacagagaagggaagagaga 56
              |||||||||||||||||||||
Sbjct: 181669 ggacagagaagggaagagaga 181649
to top
>gb|AF068862.1|AF068862 Homo sapiens BAC clone 157K21 from 8q21, complete sequence
          Length = 77425

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 36   ggacagagaagggaagagaga 56
            |||||||||||||||||||||
Sbjct: 5428 ggacagagaagggaagagaga 5408
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 89       ctcttcctgtcttcccccctt 109
                |||||||||||||||||||||
Sbjct: 20992593 ctcttcctgtcttcccccctt 20992573
to top
>emb|AL132988.4|CNS01DTW Human chromosome 14 DNA sequence BAC R-320M16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 157962

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 31    ggaggggacagagaagggaag 51
             |||||||||||||||||||||
Sbjct: 45914 ggaggggacagagaagggaag 45894
to top
>emb|AL731700.12| Mouse DNA sequence from clone RP23-239G1 on chromosome 2, complete
             sequence
          Length = 187667

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 339   gtgaatcagatgcagagtatg 359
             |||||||||||||||||||||
Sbjct: 88654 gtgaatcagatgcagagtatg 88674
to top
>emb|AL607032.16| Mouse DNA sequence from clone RP23-15L19 on chromosome 4, complete
             sequence
          Length = 136416

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 35    gggacagagaagggaagagag 55
             |||||||||||||||||||||
Sbjct: 79188 gggacagagaagggaagagag 79208
to top
>gb|AC132108.4| Mus musculus BAC clone RP24-257B11 from chromosome 3, complete sequence
          Length = 162109

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   ctccaagaacattctgatca 227
             ||||||||||||||||||||
Sbjct: 80384 ctccaagaacattctgatca 80365
to top
>gb|AC119190.7| Mus musculus chromosome 8, clone RP24-178B9, complete sequence
          Length = 139843

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    agggaggggacagagaaggg 48
             ||||||||||||||||||||
Sbjct: 93222 agggaggggacagagaaggg 93241
to top
>ref|XM_656833.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4321.2), mRNA
          Length = 3537

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 87   gcctcttcctgtcttccccccttt 110
            ||||||||||||| ||||||||||
Sbjct: 2374 gcctcttcctgtcctccccccttt 2397
to top
>gb|AC162613.2| Mus musculus chromosome 19, clone RP24-270E10, complete sequence
          Length = 147306

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 32    gaggggacagagaagggaagagag 55
             |||||||||||||||| |||||||
Sbjct: 21279 gaggggacagagaaggtaagagag 21302
to top
>gb|AC124721.4| Mus musculus chromosome 10 clone RP23-387G19, complete sequence
          Length = 216612

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     ctcttcctgtcttcccccct 108
              ||||||||||||||||||||
Sbjct: 155613 ctcttcctgtcttcccccct 155594
to top
>gb|AC092482.71| Mus musculus strain C57BL/6J clone rp23-60j11, complete sequence
          Length = 220334

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     gacagagaagggaagagaga 56
              ||||||||||||||||||||
Sbjct: 183649 gacagagaagggaagagaga 183630
to top
>emb|X85323.1|HSCAG24 H.sapiens mRNA for non polymorphic CAG repeat (CAG24)
          Length = 298

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 187 gcaggtggcagcagctgcag 206
           ||||||||||||||||||||
Sbjct: 116 gcaggtggcagcagctgcag 135
to top
>gb|AC111048.8| Mus musculus chromosome 19, clone RP23-355N22, complete sequence
          Length = 232012

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 32     gaggggacagagaagggaagagag 55
              |||||||||||||||| |||||||
Sbjct: 149929 gaggggacagagaaggtaagagag 149952



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 32     gaggggacagagaagggaagagag 55
              |||||||||||||||| |||||||
Sbjct: 111813 gaggggacagagaaggtaagagag 111790
to top
>ref|XM_500190.1| Yarrowia lipolytica CLIB122, YALI0A18161g predicted mRNA
          Length = 1158

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 122 ggcgcggccatctccatctc 141
           ||||||||||||||||||||
Sbjct: 979 ggcgcggccatctccatctc 998
to top
>emb|AL137787.11| Human DNA sequence from clone RP5-1070B1 on chromosome Xq22.1-23
             Contains the 3' end of a novel gene, a novel gene
             (KIAA1817) and the 5' end of the PRPS1  for phosphoribosyl
             pyrophosphate synthetase 1 (PRSI) gene, complete sequence
          Length = 89446

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   gcaggtggcagcagctgcag 206
             ||||||||||||||||||||
Sbjct: 52897 gcaggtggcagcagctgcag 52916
to top
>emb|AL031687.17|HS998H6 Human DNA sequence from clone RP5-998H6 on chromosome 20q13.1 Contains
             the CDH22 gene for cadherin-like 22, a novel gene and two
             CpG islands, complete sequence
          Length = 147815

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    agagaagggaagagagatgg 59
             ||||||||||||||||||||
Sbjct: 93010 agagaagggaagagagatgg 92991
to top
>gb|AC103018.7| Rattus norvegicus 1 CH230-196F22 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 212568

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     gggaggggacagagaaggga 49
              ||||||||||||||||||||
Sbjct: 149067 gggaggggacagagaaggga 149086
to top
>emb|BX571661.1| Wolinella succinogenes, complete genome; segment 5/7
          Length = 346613

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 75     ccctgaagagcagcctcttcctgtcttc 102
              |||||||||| |||||||||||| ||||
Sbjct: 316624 ccctgaagagaagcctcttcctgccttc 316651
to top
>gb|AY160770.1| Rattus norvegicus inositol 1,4,5-trisphosphate 3-kinase C (Ip3kc)
           mRNA, complete cds
          Length = 3550

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 126 cggccatctccatctcagcc 145
           ||||||||||||||||||||
Sbjct: 763 cggccatctccatctcagcc 744
to top
>emb|AL845333.3| Mouse DNA sequence from clone RP23-245E19 on chromosome 4 Contains part
              of the Ptprd gene for receptor type protein tyrosine
              phosphatase D, complete sequence
          Length = 186256

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 30     gggaggggacagagaagggaagag 53
              |||||||||||| |||||||||||
Sbjct: 146493 gggaggggacagggaagggaagag 146516
to top
>gb|AC007623.33| Homo sapiens 12 BAC RP11-608E13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 87201

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   aggagacggtcatggcagcc 171
             ||||||||||||||||||||
Sbjct: 64675 aggagacggtcatggcagcc 64656
to top
>gb|AC024585.6| Homo sapiens chromosome 19 clone LLNLF-194E9, complete sequence
          Length = 26400

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 28   cagggaggggacagagaagggaag 51
            ||||||||| ||||||||||||||
Sbjct: 7649 cagggagggaacagagaagggaag 7626
to top
>ref|XM_937007.1| PREDICTED: Homo sapiens KIAA1817 protein (KIAA1817), mRNA
          Length = 7303

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 187  gcaggtggcagcagctgcag 206
            ||||||||||||||||||||
Sbjct: 5325 gcaggtggcagcagctgcag 5344
to top
>ref|XM_042978.5| PREDICTED: Homo sapiens KIAA1817 protein (KIAA1817), mRNA
          Length = 7303

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 187  gcaggtggcagcagctgcag 206
            ||||||||||||||||||||
Sbjct: 5325 gcaggtggcagcagctgcag 5344
to top
>gb|AC090427.2| Homo sapiens chromosome 19 clone CTD-2292J18, complete sequence
          Length = 109233

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 40  agagaagggaagagagatgg 59
           ||||||||||||||||||||
Sbjct: 337 agagaagggaagagagatgg 318



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 40  agagaagggaagagagatgg 59
           ||||||||||||||||||||
Sbjct: 223 agagaagggaagagagatgg 204
to top
>gb|AC007582.7| Drosophila melanogaster, chromosome 2R, region 60F-60F, BAC clone
              BACR17E16, complete sequence
          Length = 180162

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    cagcccagaataggagacgg 160
              ||||||||||||||||||||
Sbjct: 126692 cagcccagaataggagacgg 126711
to top
>gb|AC160337.2| Mus musculus BAC clone RP23-193N1 from chromosome 9, complete sequence
          Length = 204712

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     agagaagggaagagagatgg 59
              ||||||||||||||||||||
Sbjct: 119081 agagaagggaagagagatgg 119062
to top
>gb|AC010890.9| Homo sapiens BAC clone RP11-449L24 from 2, complete sequence
          Length = 62764

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 391   aggtgataggaaagactttg 410
             ||||||||||||||||||||
Sbjct: 49917 aggtgataggaaagactttg 49936
to top
>ref|NM_178094.2| Rattus norvegicus inositol 1,4,5-trisphosphate 3-kinase C (Itpkc),
           mRNA
          Length = 3550

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 126 cggccatctccatctcagcc 145
           ||||||||||||||||||||
Sbjct: 763 cggccatctccatctcagcc 744
to top
>gb|AC022149.3|AC022149 Homo sapiens chromosome 19 clone CTD-3093B17, complete sequence
          Length = 39383

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    agagaagggaagagagatgg 59
             ||||||||||||||||||||
Sbjct: 31081 agagaagggaagagagatgg 31062



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    agagaagggaagagagatgg 59
             ||||||||||||||||||||
Sbjct: 30967 agagaagggaagagagatgg 30948
to top
>emb|AL929317.13| Mouse DNA sequence from clone RP23-239F11 on chromosome 2, complete
            sequence
          Length = 32828

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 33   aggggacagagaagggaagagaga 56
            |||||||||||| |||||||||||
Sbjct: 1450 aggggacagagaggggaagagaga 1427
to top
>emb|AL672020.5| Mouse DNA sequence from clone RP23-185A3 on chromosome X, complete
              sequence
          Length = 200613

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 32     gaggggacagagaagggaagagag 55
              |||||||| |||||||||||||||
Sbjct: 194267 gaggggactgagaagggaagagag 194244
to top
>emb|AJ440782.1|RNO440782 Rattus norvegicus mRNA for inositol 1,4,5-trisphosphate 3-kinase
           (ip3k-c gene), isoform C
          Length = 3309

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 126 cggccatctccatctcagcc 145
           ||||||||||||||||||||
Sbjct: 517 cggccatctccatctcagcc 498
to top
>emb|Z28306.1|SCYKR081C S.cerevisiae chromosome XI reading frame ORF YKR081c
          Length = 1467

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 370 ttccaaggtgctgcatttga 389
           ||||||||||||||||||||
Sbjct: 757 ttccaaggtgctgcatttga 738
to top
>emb|Z27116.1|SCUNORF1 S.cerevisiae HBS1, MRP-L20 and PRP-16 genes
          Length = 18002

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 370  ttccaaggtgctgcatttga 389
            ||||||||||||||||||||
Sbjct: 1243 ttccaaggtgctgcatttga 1224
to top
>gb|AE003466.2| Drosophila melanogaster chromosome 2R, section 73 of 73 of the complete
             sequence
          Length = 228008

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   cagcccagaataggagacgg 160
             ||||||||||||||||||||
Sbjct: 34782 cagcccagaataggagacgg 34763
to top
>gb|DQ331493.1| Synthetic construct Saccharomyces cerevisiae clone FLH202153.01X
           RPF2 gene, complete sequence
          Length = 1035

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 370 ttccaaggtgctgcatttga 389
           ||||||||||||||||||||
Sbjct: 427 ttccaaggtgctgcatttga 446
to top
>gb|AC097355.15| Mus musculus strain C57BL/6J chromosome 2 clone rp23-304j8, complete
              sequence
          Length = 163774

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     aggggacagagaagggaaga 52
              ||||||||||||||||||||
Sbjct: 115926 aggggacagagaagggaaga 115945
to top
>gb|AE000512.1| Thermotoga maritima MSB8, complete genome
          Length = 1860725

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 38      acagagaagggaagagagat 57
               ||||||||||||||||||||
Sbjct: 1509772 acagagaagggaagagagat 1509753
to top
>emb|AL928876.12| Mouse DNA sequence from clone RP23-236O6 on chromosome 2, complete
              sequence
          Length = 201545

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 33     aggggacagagaagggaagagaga 56
              |||||||||||| |||||||||||
Sbjct: 200995 aggggacagagaggggaagagaga 200972
to top
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 122     ggcgcggccatctccatctc 141
               ||||||||||||||||||||
Sbjct: 1888410 ggcgcggccatctccatctc 1888391
to top
>dbj|AP006378.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT44A10, TM0223,
             complete sequence
          Length = 101752

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 305   agaggaaaggcacccataacccagcagttgccaggtgaatcaga 348
             |||||||| ||||| || || || || |||||||||||||||||
Sbjct: 43821 agaggaaaagcaccaatcactcaacaattgccaggtgaatcaga 43778
to top
>emb|AL606903.8| Mouse DNA sequence from clone RP23-278I3 on chromosome 4, complete
              sequence
          Length = 175238

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     gggaggggacagagaaggga 49
              ||||||||||||||||||||
Sbjct: 166930 gggaggggacagagaaggga 166911
to top
>emb|AL929137.5| Mouse DNA sequence from clone RP23-412L18 on chromosome 2, complete
              sequence
          Length = 221534

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     aggggacagagaagggaaga 52
              ||||||||||||||||||||
Sbjct: 201465 aggggacagagaagggaaga 201484
to top
>dbj|AB058720.1| Homo sapiens mRNA for KIAA1817 protein, partial cds
          Length = 4928

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 187  gcaggtggcagcagctgcag 206
            ||||||||||||||||||||
Sbjct: 2944 gcaggtggcagcagctgcag 2963
to top
>emb|AL627252.16| Mouse DNA sequence from clone RP23-272P17 on chromosome 11, complete
             sequence
          Length = 137878

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    ctccctgaagagcagcctct 92
             ||||||||||||||||||||
Sbjct: 42152 ctccctgaagagcagcctct 42171


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,888,970
Number of Sequences: 3902068
Number of extensions: 5888970
Number of successful extensions: 134829
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134399
Number of HSP's gapped (non-prelim): 430
length of query: 601
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 578
effective length of database: 17,143,297,704
effective search space: 9908826072912
effective search space used: 9908826072912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top