ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63j15 |
|---|---|
| Clone Library Name | barley_pub |
>NPC2_ASPOR (O94183) Phosphatidylglycerol/phosphatidylinositol transfer protein| precursor (PG/PI-TP) Length = 175 Score = 57.0 bits (136), Expect = 5e-08 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 7/129 (5%) Frame = +2 Query: 110 VEYCNKHKNYPVKVSGVEIVPDPVERGVPATFKISASTDKNITEGKLVI-DVKYWIFNVY 286 +EYCN + + V++ P+P G S + + I +G V+ +VKY + + Sbjct: 47 LEYCNDPSGDILDIKQVDLSPNPPLPGKTLAITASGTLREKIEDGAYVLLEVKYGLITLV 106 Query: 287 SETDDIC-----TKTDCP-ATSDFELSHSQTLPSITPPGSYTIQMKMLGKHDEELSCISF 448 +T D+C + CP D L+ LP PPG YT+Q + E ++C+ Sbjct: 107 RQTADLCEQLVNVELKCPLGPGDMTLTKQVDLPKQIPPGKYTVQADVFNSDGEHITCLK- 165 Query: 449 GFSIGFLAP 475 +I F P Sbjct: 166 ALNIEFKGP 174
>NPC2_CANAL (Q5A8A2) Phosphatidylglycerol/phosphatidylinositol transfer protein| precursor (PG/PI-TP) Length = 192 Score = 54.7 bits (130), Expect = 3e-07 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 7/119 (5%) Frame = +2 Query: 110 VEYCNKHKNYPVKVSGVEIVPDPVERGVPATFKISASTDKNITEGKLV-IDVKYWIFNVY 286 +E C+ + + + V + P+P G TF + DK I EG V ++V+Y + Sbjct: 66 IEVCDASEKQLLHLDEVIVTPNPPVAGQNLTFTAVGTLDKTIEEGAYVEVEVRYGFIKLI 125 Query: 287 SETDDIC---TKTD--CPATSDFE-LSHSQTLPSITPPGSYTIQMKMLGKHDEELSCIS 445 +T D+C K D CP S + ++ + +P PPG Y + + K DE ++C++ Sbjct: 126 HQTYDLCEEIVKVDLQCPIKSGKQTITKNVEIPEEVPPGKYLVVARAYTKDDEYITCLT 184
>NPC2_ASPFU (Q4X136) Phosphatidylglycerol/phosphatidylinositol transfer protein| precursor (PG/PI-TP) Length = 175 Score = 54.7 bits (130), Expect = 3e-07 Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 7/116 (6%) Frame = +2 Query: 116 YCNKHKNYPVKVSGVEIVPDPVERGVPATFKISASTDKNITEGKLV-IDVKYWIFNVYSE 292 YC+ +++ V++VP+P G + S + + + EG V ++VKY + + + Sbjct: 49 YCSDPSGNILQIESVDLVPNPPLPGQTLSINASGNLKERVEEGAYVALEVKYGLITLIKQ 108 Query: 293 TDDICTKT-----DCPATS-DFELSHSQTLPSITPPGSYTIQMKMLGKHDEELSCI 442 T D+C + +CP + L+ LPS PPG Y + + K ++++C+ Sbjct: 109 TADLCEQIKNVDLECPLEKGEMTLTKQVDLPSHIPPGKYNVHADVYTKDGKKITCL 164
>NPC2_MAGGR (Q52FS9) Phosphatidylglycerol/phosphatidylinositol transfer protein| precursor (PG/PI-TP) Length = 178 Score = 54.3 bits (129), Expect = 3e-07 Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 7/113 (6%) Frame = +2 Query: 128 HKNYPVKVSGVEIVPDPVERGVPATFKISASTDKNITEGKLV-IDVKYWIFNVYSETDDI 304 HK+ +K++ V++ P+P + G K S + I EG + + VKY + + + D+ Sbjct: 49 HKDDILKITKVDLSPNPPKAGESLVIKASGDVTQKIEEGAYINLSVKYGLIRLINTKADL 108 Query: 305 CTKT-----DCPATSD-FELSHSQTLPSITPPGSYTIQMKMLGKHDEELSCIS 445 C + +CP ++ S LP+ PPG YT+ + K ++++SC++ Sbjct: 109 CEQIKNVDLECPIDEGKLDIVKSVDLPNEIPPGKYTVFADVYTKDNKKISCLT 161
>NPC2_KLULA (Q6CNE0) Phosphatidylglycerol/phosphatidylinositol transfer protein| precursor (PG/PI-TP) Length = 173 Score = 54.3 bits (129), Expect = 3e-07 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 10/119 (8%) Frame = +2 Query: 119 CNKHKNYPVKVSGVEIVPDPVERGVPATFKISASTDKNITEGKLV-IDVKYWIFNVYSET 295 C+ ++ + V+ V +VP+P +RG T + I EG + I+V+ + S+T Sbjct: 47 CDVDQSQSLDVTQVNLVPNPPQRGENLTIAAAGVLQTTIEEGAYIDIEVRLGYIKLISQT 106 Query: 296 DDICTKTD--------CPATSD-FELSHSQTLPSITPPGSYTIQMKMLGKHDEELSCIS 445 D+C + + CP +EL+ +PS PPG Y++ + DE+++C++ Sbjct: 107 YDLCEQLEENDIDGLKCPIEEGVYELNKIVEIPSEVPPGKYSVIARAYNVDDEQITCLT 165
>NPC2_EMENI (Q5B0Q1) Phosphatidylglycerol/phosphatidylinositol transfer protein| precursor (PG/PI-TP) Length = 169 Score = 52.8 bits (125), Expect = 1e-06 Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 7/118 (5%) Frame = +2 Query: 110 VEYCNKHKNYPVKVSGVEIVPDPVERGVPATFKISASTDKNITEGK-LVIDVKYWIFNVY 286 +EYC++ ++++ V++ P+P + G + + + + I G +V++VKY + + Sbjct: 45 LEYCSEPSGDILEINSVDLAPNPPKAGTTLKIRAAGNLHERIEAGAYVVLEVKYGLITLL 104 Query: 287 SETDDICTK-----TDCP-ATSDFELSHSQTLPSITPPGSYTIQMKMLGKHDEELSCI 442 +T D+C + CP L+ LPS P G YT+ + K ++ ++C+ Sbjct: 105 RDTADLCAQLTNVDLQCPLEEGPMVLTKEVDLPSQIPRGRYTVHADVYTKDNKRITCL 162
>NPC2_ASHGO (Q756Q3) Phosphatidylglycerol/phosphatidylinositol transfer protein| precursor (PG/PI-TP) Length = 213 Score = 51.2 bits (121), Expect = 3e-06 Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 9/118 (7%) Frame = +2 Query: 119 CNKHKNYPVKVSGVEIVPDPVERGVPATFKISASTDKNITEGKLV-IDVKYWIFNVYSET 295 C+ +++ + V +EI P+P RG T + + +G V ++V+ + SET Sbjct: 50 CDLDEDHLLDVQEIEITPNPPHRGKNLTVEARGDLFGPVEDGAYVTVEVRLGYIKLLSET 109 Query: 296 DDICTKTD-------CPATS-DFELSHSQTLPSITPPGSYTIQMKMLGKHDEELSCIS 445 D+C + + CP ++ELS + +P PPG Y + + DE ++C++ Sbjct: 110 FDLCKELEENDLGLQCPLEEGEYELSKTVEIPQQVPPGRYHVVARAYTVDDEPITCLT 167
>NPC2_NEUCR (Q7RZ85) Phosphatidylglycerol/phosphatidylinositol transfer protein| precursor (PG/PI-TP) Length = 177 Score = 49.7 bits (117), Expect = 8e-06 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 12/121 (9%) Frame = +2 Query: 143 VKVSGVEIVPDPVERGVPATFKISASTDKNITEGKLV-IDVKYWIFNVYSETDDIC---- 307 V + V + P+P E G T + S + I EG V + VKY + + + D+C Sbjct: 54 VTIEEVILTPNPPEAGQTLTIEASGIVKEAIEEGAYVNLQVKYGYIRLINTSADLCKEMK 113 Query: 308 -TKTDCPATSD-FELSHSQTLPSITPPGSYTIQMKMLGKHDEELSCIS----FG-FSIGF 466 + +CP ++ + LP PPG YT++ + D+ ++C++ FG ++GF Sbjct: 114 NVELECPIKKGRLSITKNVELPKEIPPGKYTVEADVYNSDDKHITCLTATVFFGRKTLGF 173 Query: 467 L 469 L Sbjct: 174 L 174
>NPC2_DEBHA (Q6BV42) Phosphatidylglycerol/phosphatidylinositol transfer protein| precursor (PG/PI-TP) Length = 196 Score = 48.5 bits (114), Expect = 2e-05 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 7/108 (6%) Frame = +2 Query: 143 VKVSGVEIVPDPVERGVPATFKISASTDKNITEGKLV-IDVKYWIFNVYSETDDIC---T 310 + + V I P+P RG TF ++I +G V +DV+Y + +T D+C T Sbjct: 81 LNLQSVVIDPNPPLRGENLTFVAKGVLSQDIEDGAYVEVDVRYGFIKLLHQTFDLCEEIT 140 Query: 311 KTD--CPATSDFELSHSQT-LPSITPPGSYTIQMKMLGKHDEELSCIS 445 K D CP + ++ + +P+ PPG Y + + K D ++C+S Sbjct: 141 KIDLECPISKGQQVIEKKVEIPAEVPPGKYIVSARAYTKDDIFITCLS 188
>NPC2_YARLI (Q6CHU5) Phosphatidylglycerol/phosphatidylinositol transfer protein| precursor (PG/PI-TP) Length = 189 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 7/118 (5%) Frame = +2 Query: 110 VEYCNKHKNYPVKVSGVEIVPDPVERGVPATFKISASTDKNITEGKLV-IDVKYWIFNVY 286 + C+ +++ + I P+P +G T + S +++ EG + ++V+Y + Sbjct: 62 ISLCDAEYEQLLEIKHLSIDPNPPAKGQNLTIEASGYLYEDVEEGAYIEVEVRYGYIRLI 121 Query: 287 SETDDICTKTD-----CPATS-DFELSHSQTLPSITPPGSYTIQMKMLGKHDEELSCI 442 S+T D+C +++ CP + D +L+ LP+ PPG Y + D+ ++C+ Sbjct: 122 SQTLDLCEQSEQVDWSCPIKAGDLKLNKQIELPNEIPPGKYVAVARAYTVDDDLITCL 179
>NPC2_USTMA (Q4P580) Phosphatidylglycerol/phosphatidylinositol transfer protein| precursor (PG/PI-TP) Length = 193 Score = 46.6 bits (109), Expect = 7e-05 Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 9/117 (7%) Frame = +2 Query: 143 VKVSGVEIVPDPVERGVPATFKISASTDKNITEGKLV-IDVKYWIFNVYSETDDICTKT- 316 V V + + PDP G T + + +++G + VK + + + D+C + Sbjct: 75 VNVESIVVSPDPPVPGQNLTVRAKGTVKDEVSDGTFADVIVKLGLIRLLARRFDVCEQAR 134 Query: 317 ------DCPATS-DFELSHSQTLPSITPPGSYTIQMKMLGKHDEELSCISFGFSIGF 466 CP ++ ++EL H+ LP PPG + + + + L C+ GF Sbjct: 135 ESNADLQCPLSAGEYELEHTVALPREIPPGKFNVHITGENQDGSNLLCLDLSIQFGF 191
>NPC2_CANGA (Q6FNB1) Phosphatidylglycerol/phosphatidylinositol transfer protein| precursor (PG/PI-TP) Length = 185 Score = 45.4 bits (106), Expect = 2e-04 Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 11/123 (8%) Frame = +2 Query: 110 VEYCNKHKNYPVKVSGVEIVPDPVERGVPATFKISASTDKNITEGKLV-IDVKYWIFNVY 286 ++ C+ + ++++ +++VP+P +RG K S + I EG V ++V+ + Sbjct: 53 LKMCDIAEGQLLEITKLDLVPNPPKRGSKLVIKASGEIFETIEEGAYVDVEVRLGYIKLL 112 Query: 287 SETDDICTKTD--------CPATSD--FELSHSQTLPSITPPGSYTIQMKMLGKHDEELS 436 ++T D+C + CP LS +P PPG Y + + D+ ++ Sbjct: 113 TQTYDLCEILEDNDVDGLTCPIKKGKYDNLSKDVDIPQEVPPGKYLVTARAYTNDDDLIT 172 Query: 437 CIS 445 CI+ Sbjct: 173 CIT 175
>NPC2_SCHPO (Q9C0X9) Phosphatidylglycerol/phosphatidylinositol transfer protein| precursor (PG/PI-TP) Length = 188 Score = 45.1 bits (105), Expect = 2e-04 Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 15/121 (12%) Frame = +2 Query: 143 VKVSGVEIVPDPVERGVPATFKISASTDKNITEGKLV-IDVKYWIFNVYSETDDICTKT- 316 V V + ++P+P G T + + + G V I VKY + +E DIC K Sbjct: 63 VVVDYINLIPNPPAAGKNLTIETEINVGTTVLNGSYVDIQVKYGFVRIVNERLDICDKAY 122 Query: 317 -----DCPATSDFELSHSQ-TLPSITPPGSYTIQMKMLGKHDEELSCIS-------FGFS 457 +CP + +LP PPG Y + E+L+C+S FGF Sbjct: 123 ELAAVECPVEPGIITKQATISLPWAIPPGRYHVLATAYNADGEQLTCVSASVSFSHFGFQ 182 Query: 458 I 460 + Sbjct: 183 L 183
>NPC2_YEAST (Q12408) Phosphatidylglycerol/phosphatidylinositol transfer protein| precursor (PG/PI-TP) (NPC2 homolog) Length = 173 Score = 42.4 bits (98), Expect = 0.001 Identities = 24/111 (21%), Positives = 50/111 (45%), Gaps = 10/111 (9%) Frame = +2 Query: 143 VKVSGVEIVPDPVERGVPATFKISASTDKNITEGKLV-IDVKYWIFNVYSETDDICTKTD 319 V++ V + P+P RG T + + I EG + ++V+ + S+T D+C + Sbjct: 55 VEIKEVNLDPNPPVRGENLTISANGEVFETIEEGAYIDVEVRLGYIRLLSQTFDLCETLE 114 Query: 320 --------CPAT-SDFELSHSQTLPSITPPGSYTIQMKMLGKHDEELSCIS 445 CP ++ + +P PPG Y + + + D+ ++C++ Sbjct: 115 DNDIEGLSCPIEPGEYNIKKIVEIPGEVPPGKYVVVARAYTEKDDLITCLT 165
>RPOA2_THEVO (Q979F5) DNA-directed RNA polymerase subunit A'' (EC 2.7.7.6)| Length = 508 Score = 32.0 bits (71), Expect = 1.8 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 7/92 (7%) Frame = +2 Query: 179 VERGVPATFKISASTDKNITEGKLVIDVKYWIFNV-------YSETDDICTKTDCPATSD 337 + + VPA + + K ITEG + D K + ++V YS D+ K S Sbjct: 14 LSKSVPAKYAVDFEVPKGITEGYVTSDKKRFTYHVSISSVAPYSNESDVIQKKKSGLKSI 73 Query: 338 FELSHSQTLPSITPPGSYTIQMKMLGKHDEEL 433 E+ Q + I+ ++ + GK +EL Sbjct: 74 MEIEKIQKIEPIS-----IMEFRSSGKRIDEL 100
>SSS_SALOF (O81193) (+)-sabinene synthase, chloroplast precursor (EC 4.2.3.11)| (SSS) Length = 590 Score = 31.6 bits (70), Expect = 2.4 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = +2 Query: 179 VERG-VPATFKISASTDKNITEGKLVIDVKYWIFNVYSETDDICTKTDCPATSD 337 +ERG VP + + D N +E + V VK+ I + E + + T +DCP T D Sbjct: 496 LERGDVPKAIQCYMN-DTNASEREAVEHVKFLIREAWKEMNTVTTASDCPFTDD 548
>PGMP_BRANA (Q9SMM0) Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)| (Glucose phosphomutase) (PGM) Length = 629 Score = 30.8 bits (68), Expect = 4.1 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +2 Query: 140 PVKVSGVEIVPDPVERGVPATFKISASTDKNITEGKLVIDVKY 268 P+ V +E PD + GVP D N+T K ++DV Y Sbjct: 298 PIFVDNLEAKPDSISNGVPLEDFGHGHPDPNLTYAKDLVDVMY 340
>RPOB_LEPBI (Q9KK59) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1228 Score = 29.6 bits (65), Expect = 9.1 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Frame = +2 Query: 152 SGVEIVPDPVERGVPATFKISA--STDKNITEGKLVIDVKYWIFNVYSETD--DICTKTD 319 S V+IV +P+ GVP+ + T KL I+ + +F+ SE D D C K Sbjct: 1003 SPVDIVLNPL--GVPSRMNLGQIFETQLGFAAKKLGINFETPVFDGASEGDVNDFCKKAG 1060 Query: 320 CPATSDFELSHSQT 361 P S F+L +T Sbjct: 1061 LPENSKFQLYDGRT 1074 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,571,522 Number of Sequences: 219361 Number of extensions: 1692137 Number of successful extensions: 4771 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4595 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4758 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6882837918 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
