ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bah63j14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA, complete cds Length = 3054 Score = 1013 bits (511), Expect = 0.0 Identities = 514/515 (99%) Strand = Plus / Plus Query: 2 cgacctcgtcagctcagagttggatccacaaacggggcaggagcgggagcccatctccgg 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 456 cgacctcgtcagctcagagttggatccacaaacggggcaggagcgggagcccatctccgg 515 Query: 62 ggccgtcaagcactcgggtagagtggacgacgagtgggacatgtacgaggcgaccttcaa 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 516 ggccgtcaagcactcgggtagagtggacgacgagtgggacatgtacgaggcgaccttcaa 575 Query: 122 ggtgccggcgtcgttcggacccatcggcgccgtgcaggtcacaaactaccaccacagcga 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 576 ggtgccggcgtcgttcggacccatcggcgccgtgcaggtcacaaactaccaccacagcga 635 Query: 182 gatgctgctgggggacatcgaggtcttccccaccggccaggaggagtccgccgtcacctt 241 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 636 gatgttgctgggggacatcgaggtcttccccaccggccaggaggagtccgccgtcacctt 695 Query: 242 ccactgcaagtcctggatcgacccctcgcactgcacccccgacaagcgtgtcttctttcc 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 696 ccactgcaagtcctggatcgacccctcgcactgcacccccgacaagcgtgtcttctttcc 755 Query: 302 cgcgcactcttaccttccgtcgcagacgcccaagggcgtggaggggttgcgcaagcgcga 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 756 cgcgcactcttaccttccgtcgcagacgcccaagggcgtggaggggttgcgcaagcgcga 815 Query: 362 gctggagatcctccgcggcaccggctgcggggagcgcaaggagcacgaccgcatctacga 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 816 gctggagatcctccgcggcaccggctgcggggagcgcaaggagcacgaccgcatctacga 875 Query: 422 ctacgacgtgtacaatgacctgggcaaccccgacgacgacaacaaccccaccacgcggcc 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 876 ctacgacgtgtacaatgacctgggcaaccccgacgacgacaacaaccccaccacgcggcc 935 Query: 482 cgtgctcggtggcaaggagcacccctacccacgac 516 ||||||||||||||||||||||||||||||||||| Sbjct: 936 cgtgctcggtggcaaggagcacccctacccacgac 970
>emb|AJ507212.1|HVU507212 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:2 gene) Length = 3023 Score = 123 bits (62), Expect = 6e-25 Identities = 175/212 (82%), Gaps = 3/212 (1%) Strand = Plus / Plus Query: 240 ttccactgcaagtcctggatcgacccctcgcactgcacccccgacaagcgtgtcttcttt 299 ||||||||| | ||||||||||||||||| || |||| ||||||||||||| |||||| Sbjct: 690 ttccactgccaatcctggatcgacccctcacattgcagccccgacaagcgtaccttcttc 749 Query: 300 cc---cgcgcactcttaccttccgtcgcagacgcccaagggcgtggaggggttgcgcaag 356 || || | | || ||| | ||||||||||| || ||||| |||||| |||||||||| Sbjct: 750 cctgtcgagaaatcctacatcccgtcgcagacaccaaagggtgtggagaagttgcgcaag 809 Query: 357 cgcgagctggagatcctccgcggcaccggctgcggggagcgcaaggagcacgaccgcatc 416 | || |||||| ||||||||||| |||||||| ||||||||| | || ||||||||| Sbjct: 810 agtgaactggaggccctccgcggcaatggctgcggcgagcgcaagaaacatgaccgcatc 869 Query: 417 tacgactacgacgtgtacaatgacctgggcaa 448 ||||| |||||||| ||||| ||||| ||||| Sbjct: 870 tacgattacgacgtatacaacgacctcggcaa 901 Score = 69.9 bits (35), Expect = 8e-09 Identities = 38/39 (97%) Strand = Plus / Plus Query: 476 gcggcccgtgctcggtggcaaggagcacccctacccacg 514 ||||||||||||||| ||||||||||||||||||||||| Sbjct: 914 gcggcccgtgctcggcggcaaggagcacccctacccacg 952 Score = 60.0 bits (30), Expect = 8e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 6 ctcgtcagctcagagttggatccacaaacggggcagga 43 ||||||||||| |||||||||||| ||||||||||||| Sbjct: 444 ctcgtcagctccgagttggatccaaaaacggggcagga 481
>ref|XM_483279.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3198 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Plus Query: 406 acgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 |||||||| |||||||||||||||||||||| ||||| |||||||||||| Sbjct: 972 acgaccgcgtctacgactacgacgtgtacaacgacctcggcaaccccgac 1021
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Plus Query: 406 acgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 |||||||| |||||||||||||||||||||| ||||| |||||||||||| Sbjct: 25240100 acgaccgcgtctacgactacgacgtgtacaacgacctcggcaaccccgac 25240149 Score = 44.1 bits (22), Expect = 0.45 Identities = 40/46 (86%) Strand = Plus / Minus Query: 406 acgaccgcatctacgactacgacgtgtacaatgacctgggcaaccc 451 ||||||| |||||||||||||||| ||||| ||||| || ||||| Sbjct: 25211894 acgaccgtgtctacgactacgacgtttacaacgacctcggtaaccc 25211849
>dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1168A08 Length = 138135 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Plus Query: 406 acgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 |||||||| |||||||||||||||||||||| ||||| |||||||||||| Sbjct: 105223 acgaccgcgtctacgactacgacgtgtacaacgacctcggcaaccccgac 105272 Score = 44.1 bits (22), Expect = 0.45 Identities = 40/46 (86%) Strand = Plus / Minus Query: 406 acgaccgcatctacgactacgacgtgtacaatgacctgggcaaccc 451 ||||||| |||||||||||||||| ||||| ||||| || ||||| Sbjct: 77017 acgaccgtgtctacgactacgacgtttacaacgacctcggtaaccc 76972
>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23 Length = 147336 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Plus Query: 406 acgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 |||||||| |||||||||||||||||||||| ||||| |||||||||||| Sbjct: 15285 acgaccgcgtctacgactacgacgtgtacaacgacctcggcaaccccgac 15334
>dbj|AK066825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075A10, full insert sequence Length = 3196 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Plus Query: 406 acgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 |||||||| |||||||||||||||||||||| ||||| |||||||||||| Sbjct: 970 acgaccgcgtctacgactacgacgtgtacaacgacctcggcaaccccgac 1019
>gb|AF095896.1|AF095896 Oryza sativa lipoxygenase (CM-LOX2) mRNA, partial cds Length = 2232 Score = 75.8 bits (38), Expect = 1e-10 Identities = 47/50 (94%) Strand = Plus / Plus Query: 406 acgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 |||||||| |||||||||||||||||||||| ||||| |||||||||||| Sbjct: 47 acgaccgcgtctacgactacgacgtgtacaacgacctcggcaaccccgac 96
>emb|AJ966349.1| Hordeum vulgare subsp. vulgare mRNA for lipoxygenase-like protein (lox gene) Length = 3123 Score = 63.9 bits (32), Expect = 5e-07 Identities = 35/36 (97%) Strand = Plus / Plus Query: 416 ctacgactacgacgtgtacaatgacctgggcaaccc 451 ||||||||||||||||||||| |||||||||||||| Sbjct: 926 ctacgactacgacgtgtacaacgacctgggcaaccc 961
>emb|AJ270938.1|OSA270938 Oryza sativa mRNA for lipoxygenase (rci-1 gene) Length = 3018 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 388 gcggggagcgcaaggagcacgaccgcatctacgactacgacgtgtacaatgacctgggca 447 |||| |||||||||||| || |||||||||||||||||||| ||||| ||||| ||| Sbjct: 739 gcggcgagcgcaaggagtgggagcgcatctacgactacgacgtctacaacgacctcggcg 798 Query: 448 accccgac 455 |||||||| Sbjct: 799 accccgac 806
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 388 gcggggagcgcaaggagcacgaccgcatctacgactacgacgtgtacaatgacctgggca 447 |||| |||||||||||| || |||||||||||||||||||| ||||| ||||| ||| Sbjct: 22891489 gcggcgagcgcaaggagtgggagcgcatctacgactacgacgtctacaacgacctcggcg 22891430 Query: 448 accccgac 455 |||||||| Sbjct: 22891429 accccgac 22891422 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 373 tccgcggcaccggctgcggggagcgcaaggagcacgaccgcatctacgactacgacgtgt 432 ||||||||| ||| |||| |||||||||||| || ||| ||||||||||||| || | Sbjct: 22955762 tccgcggcaatggccgcggcgagcgcaaggagtgggagcgcgtctacgactacgatgtct 22955821 Query: 433 acaatgacctgggcaaccccgac 455 |||| ||||| ||| |||||||| Sbjct: 22955822 acaacgacctcggcgaccccgac 22955844 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 230 cgccgtcaccttccactgcaagtcctggatcg 261 ||||||||||||||| ||||| || ||||||| Sbjct: 22955232 cgccgtcaccttccaatgcaactcgtggatcg 22955263
>dbj|AK072241.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002P20, full insert sequence Length = 3080 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 388 gcggggagcgcaaggagcacgaccgcatctacgactacgacgtgtacaatgacctgggca 447 |||| |||||||||||| || |||||||||||||||||||| ||||| ||||| ||| Sbjct: 758 gcggcgagcgcaaggagtgggagcgcatctacgactacgacgtctacaacgacctcggcg 817 Query: 448 accccgac 455 |||||||| Sbjct: 818 accccgac 825
>dbj|AK066737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013079G10, full insert sequence Length = 2747 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 388 gcggggagcgcaaggagcacgaccgcatctacgactacgacgtgtacaatgacctgggca 447 |||| |||||||||||| || |||||||||||||||||||| ||||| ||||| ||| Sbjct: 265 gcggcgagcgcaaggagtgggagcgcatctacgactacgacgtctacaacgacctcggcg 324 Query: 448 accccgac 455 |||||||| Sbjct: 325 accccgac 332
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 388 gcggggagcgcaaggagcacgaccgcatctacgactacgacgtgtacaatgacctgggca 447 |||| |||||||||||| || |||||||||||||||||||| ||||| ||||| ||| Sbjct: 22819680 gcggcgagcgcaaggagtgggagcgcatctacgactacgacgtctacaacgacctcggcg 22819621 Query: 448 accccgac 455 |||||||| Sbjct: 22819620 accccgac 22819613 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 373 tccgcggcaccggctgcggggagcgcaaggagcacgaccgcatctacgactacgacgtgt 432 ||||||||| ||| |||| |||||||||||| || ||| ||||||||||||| || | Sbjct: 22883953 tccgcggcaatggccgcggcgagcgcaaggagtgggagcgcgtctacgactacgatgtct 22884012 Query: 433 acaatgacctgggcaaccccgac 455 |||| ||||| ||| |||||||| Sbjct: 22884013 acaacgacctcggcgaccccgac 22884035 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 230 cgccgtcaccttccactgcaagtcctggatcg 261 ||||||||||||||| ||||| || ||||||| Sbjct: 22883423 cgccgtcaccttccaatgcaactcgtggatcg 22883454
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 388 gcggggagcgcaaggagcacgaccgcatctacgactacgacgtgtacaatgacctgggca 447 |||| |||||||||||| || |||||||||||||||||||| ||||| ||||| ||| Sbjct: 766 gcggcgagcgcaaggagtgggagcgcatctacgactacgacgtctacaacgacctcggcg 707 Query: 448 accccgac 455 |||||||| Sbjct: 706 accccgac 699 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 373 tccgcggcaccggctgcggggagcgcaaggagcacgaccgcatctacgactacgacgtgt 432 ||||||||| ||| |||| |||||||||||| || ||| ||||||||||||| || | Sbjct: 65039 tccgcggcaatggccgcggcgagcgcaaggagtgggagcgcgtctacgactacgatgtct 65098 Query: 433 acaatgacctgggcaaccccgac 455 |||| ||||| ||| |||||||| Sbjct: 65099 acaacgacctcggcgaccccgac 65121 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 230 cgccgtcaccttccactgcaagtcctggatcg 261 ||||||||||||||| ||||| || ||||||| Sbjct: 64509 cgccgtcaccttccaatgcaactcgtggatcg 64540
>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148705 Score = 63.9 bits (32), Expect = 5e-07 Identities = 59/68 (86%) Strand = Plus / Plus Query: 388 gcggggagcgcaaggagcacgaccgcatctacgactacgacgtgtacaatgacctgggca 447 |||| |||||||||||| || |||||||||||||||||||| ||||| ||||| ||| Sbjct: 65355 gcggcgagcgcaaggagtgggagcgcatctacgactacgacgtctacaacgacctcggcg 65414 Query: 448 accccgac 455 |||||||| Sbjct: 65415 accccgac 65422 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Minus Query: 373 tccgcggcaccggctgcggggagcgcaaggagcacgaccgcatctacgactacgacgtgt 432 ||||||||| ||| |||| |||||||||||| || ||| ||||||||||||| || | Sbjct: 1063 tccgcggcaatggccgcggcgagcgcaaggagtgggagcgcgtctacgactacgatgtct 1004 Query: 433 acaatgacctgggcaaccccgac 455 |||| ||||| ||| |||||||| Sbjct: 1003 acaacgacctcggcgaccccgac 981 Score = 40.1 bits (20), Expect = 7.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 230 cgccgtcaccttccactgcaagtcctggatcg 261 ||||||||||||||| ||||| || ||||||| Sbjct: 1593 cgccgtcaccttccaatgcaactcgtggatcg 1562
>ref|XM_462649.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2700 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 417 tacgactacgacgtgtacaatgacctgggcaaccc 451 |||||||||||||||||||| |||||||||||||| Sbjct: 727 tacgactacgacgtgtacaacgacctgggcaaccc 761
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 417 tacgactacgacgtgtacaatgacctgggcaaccc 451 |||||||||||||||||||| |||||||||||||| Sbjct: 22281033 tacgactacgacgtgtacaacgacctgggcaaccc 22281067
>gb|AY103918.1| Zea mays PCO093660 mRNA sequence Length = 1752 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 393 gagcgcaaggagcacgaccgcatctacgactacgacgtgtacaatgacctgggcaaccc 451 |||||||||| | ||| ||| |||||||||||||||||||||| ||||||||| |||| Sbjct: 896 gagcgcaaggtgttcgagcgcgtctacgactacgacgtgtacaacgacctgggcgaccc 954 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 117 ttcaaggtgccggcgtcgttcgg 139 ||||||||||||||||||||||| Sbjct: 620 ttcaaggtgccggcgtcgttcgg 642 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 229 ccgccgtcaccttccactgcaagtcctgg 257 |||||||||||||| ||||||| |||||| Sbjct: 732 ccgccgtcaccttcgactgcaactcctgg 760
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22, complete sequence Length = 147214 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 417 tacgactacgacgtgtacaatgacctgggcaaccc 451 |||||||||||||||||||| |||||||||||||| Sbjct: 31935 tacgactacgacgtgtacaacgacctgggcaaccc 31969
>ref|XM_464447.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3123 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 407 cgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 ||||||| |||||||||||||||| ||||| ||||| ||| |||||||| Sbjct: 844 cgaccgcgtctacgactacgacgtctacaacgacctcggcgaccccgac 892 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 228 tccgccgtcaccttccactgcaagtcctgg 257 ||||||||||||||| ||||||| |||||| Sbjct: 665 tccgccgtcaccttcgactgcaactcctgg 694
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 407 cgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 ||||||| |||||||||||||||| ||||| ||||| ||| |||||||| Sbjct: 5281592 cgaccgcgtctacgactacgacgtctacaacgacctcggcgaccccgac 5281544 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Minus Query: 228 tccgccgtcaccttccactgcaagtcctgg 257 ||||||||||||||| ||||||| |||||| Sbjct: 5281867 tccgccgtcaccttcgactgcaactcctgg 5281838
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1225_F07 Length = 142772 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 407 cgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 ||||||| |||||||||||||||| ||||| ||||| ||| |||||||| Sbjct: 7895 cgaccgcgtctacgactacgacgtctacaacgacctcggcgaccccgac 7847 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Minus Query: 228 tccgccgtcaccttccactgcaagtcctgg 257 ||||||||||||||| ||||||| |||||| Sbjct: 8170 tccgccgtcaccttcgactgcaactcctgg 8141
>dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full insert sequence Length = 3160 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 407 cgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 ||||||| |||||||||||||||| ||||| ||||| ||| |||||||| Sbjct: 843 cgaccgcgtctacgactacgacgtctacaacgacctcggcgaccccgac 891 Score = 44.1 bits (22), Expect = 0.45 Identities = 28/30 (93%) Strand = Plus / Plus Query: 228 tccgccgtcaccttccactgcaagtcctgg 257 ||||||||||||||| ||||||| |||||| Sbjct: 664 tccgccgtcaccttcgactgcaactcctgg 693
>dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B01, full insert sequence Length = 2250 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 407 cgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 ||||||| |||||||||||||||| ||||| ||||| ||| |||||||| Sbjct: 5 cgaccgcgtctacgactacgacgtctacaacgacctcggcgaccccgac 53
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds Length = 2845 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 400 aggagcacgaccgcatctacgactacgacgtgtacaatgacctgggc 446 |||||||||||||| ||||| ||||||||| ||||| ||||||||| Sbjct: 599 aggagcacgaccgcgtctaccgctacgacgtctacaacgacctgggc 645
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds Length = 2818 Score = 54.0 bits (27), Expect = 5e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 400 aggagcacgaccgcatctacgactacgacgtgtacaatgacct 442 |||||||||||||||||||| ||||||||| ||||| ||||| Sbjct: 652 aggagcacgaccgcatctaccgctacgacgtctacaacgacct 694
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 400 aggagcacgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 |||||||||||||| ||||| ||||||||| ||||| ||||| ||| | |||||| Sbjct: 575 aggagcacgaccgcgtctaccgctacgacgtctacaacgacctcggcgagcccgac 630
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 400 aggagcacgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 |||||||||||||| ||||| ||||||||| ||||| ||||| ||| | |||||| Sbjct: 30024026 aggagcacgaccgcgtctaccgctacgacgtctacaacgacctcggcgagcccgac 30024081 Score = 40.1 bits (20), Expect = 7.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 400 aggagcacgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 |||||||||||||| ||||| |||||| || ||||| ||||| ||| ||||||| Sbjct: 27800373 aggagcacgaccgcgtctaccgctacgatgtctacaacgacctcggctcccccgac 27800428
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 400 aggagcacgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 |||||||||||||| ||||| ||||||||| ||||| ||||| ||| | |||||| Sbjct: 672 aggagcacgaccgcgtctaccgctacgacgtctacaacgacctcggcgagcccgac 727
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Minus Query: 400 aggagcacgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 |||||||||||||| ||||| ||||||||| ||||| ||||| ||| | |||||| Sbjct: 83725 aggagcacgaccgcgtctaccgctacgacgtctacaacgacctcggcgagcccgac 83670
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 400 aggagcacgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 |||||||||||||| ||||| ||||||||| ||||| ||||| ||| | |||||| Sbjct: 30115448 aggagcacgaccgcgtctaccgctacgacgtctacaacgacctcggcgagcccgac 30115503 Score = 40.1 bits (20), Expect = 7.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 400 aggagcacgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 |||||||||||||| ||||| |||||| || ||||| ||||| ||| ||||||| Sbjct: 27891697 aggagcacgaccgcgtctaccgctacgatgtctacaacgacctcggctcccccgac 27891752
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 48.1 bits (24), Expect = 0.029 Identities = 48/56 (85%) Strand = Plus / Plus Query: 400 aggagcacgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 |||||||||||||| ||||| ||||||||| ||||| ||||| ||| | |||||| Sbjct: 690 aggagcacgaccgcgtctaccgctacgacgtctacaacgacctcggcgagcccgac 745
>ref|XM_483276.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2775 Score = 44.1 bits (22), Expect = 0.45 Identities = 40/46 (86%) Strand = Plus / Plus Query: 406 acgaccgcatctacgactacgacgtgtacaatgacctgggcaaccc 451 ||||||| |||||||||||||||| ||||| ||||| || ||||| Sbjct: 770 acgaccgtgtctacgactacgacgtttacaacgacctcggtaaccc 815
>gb|AF095895.1|AF095895 Oryza sativa lipoxygenase (CM-LOX1) mRNA, partial cds Length = 2664 Score = 44.1 bits (22), Expect = 0.45 Identities = 40/46 (86%) Strand = Plus / Plus Query: 406 acgaccgcatctacgactacgacgtgtacaatgacctgggcaaccc 451 ||||||| |||||||||||||||| ||||| ||||| || ||||| Sbjct: 458 acgaccgtgtctacgactacgacgtttacaacgacctcggtaaccc 503
>dbj|D14000.1|RICL2OP Oryza sativa (japonica cultivar-group) lox2osPil mRNA for lipoxygenase, complete cds Length = 3007 Score = 44.1 bits (22), Expect = 0.45 Identities = 40/46 (86%) Strand = Plus / Plus Query: 406 acgaccgcatctacgactacgacgtgtacaatgacctgggcaaccc 451 ||||||| |||||||||||||||| ||||| ||||| || ||||| Sbjct: 888 acgaccgtgtctacgactacgacgtttacaacgacctcggtaaccc 933
>gb|M90412.1|STMHRDC Streptomyces aureofaciens principal sigma- like factor (hrdC) gene, complete cds Length = 1965 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 353 caagcgcgagctggagatcctc 374 |||||||||||||||||||||| Sbjct: 956 caagcgcgagctggagatcctc 977
>gb|AE012523.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 431 of 460 of the complete genome Length = 10029 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 451 ccgacgacgacaacaaccccaccacgcgg 479 |||||||||||||| |||||||| ||||| Sbjct: 7550 ccgacgacgacaacgaccccaccgcgcgg 7522
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 42.1 bits (21), Expect = 1.8 Identities = 48/57 (84%) Strand = Plus / Plus Query: 400 aggagcacgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgacg 456 |||||||||||||| | ||| ||||||||| ||||| ||||| ||| | ||||||| Sbjct: 2243 aggagcacgaccgcgtgtaccgctacgacgtctacaacgacctcggcgagcccgacg 2299
>gb|AE016814.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome I, complete sequence Length = 691920 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 tgcaagtcctggatcgacccc 266 ||||||||||||||||||||| Sbjct: 497118 tgcaagtcctggatcgacccc 497098
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 451 ccgacgacgacaacaaccccaccacgcgg 479 |||||||||||||| |||||||| ||||| Sbjct: 4844214 ccgacgacgacaacgaccccaccgcgcgg 4844186
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 42.1 bits (21), Expect = 1.8 Identities = 48/57 (84%) Strand = Plus / Plus Query: 400 aggagcacgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgacg 456 |||||||||||||| | ||| ||||||||| ||||| ||||| ||| | ||||||| Sbjct: 578 aggagcacgaccgcgtgtaccgctacgacgtctacaacgacctcggcgagcccgacg 634
>ref|NM_207980.1| Eremothecium gossypii AAR086Wp (AAR086W), mRNA Length = 2424 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 246 tgcaagtcctggatcgacccc 266 ||||||||||||||||||||| Sbjct: 518 tgcaagtcctggatcgacccc 498
>gb|AF149803.1|AF149803 Zea mays lipoxygenase mRNA, lipoxygenase-L2 allele, partial cds Length = 2267 Score = 42.1 bits (21), Expect = 1.8 Identities = 48/57 (84%) Strand = Plus / Plus Query: 400 aggagcacgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgacg 456 |||||||||||||| | ||| ||||||||| ||||| ||||| ||| | ||||||| Sbjct: 47 aggagcacgaccgcgtgtaccgctacgacgtctacaacgacctcggcgagcccgacg 103
>gb|AC167439.2| Mus musculus BAC clone RP23-461M17 from chromosome 3, complete sequence Length = 175414 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 452 cgacgacgacaacaaccccaccac 475 |||||||||||||||| ||||||| Sbjct: 76079 cgacgacgacaacaacaccaccac 76102
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2601 Score = 40.1 bits (20), Expect = 7.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 400 aggagcacgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 |||||||||||||| ||||| |||||| || ||||| ||||| ||| ||||||| Sbjct: 584 aggagcacgaccgcgtctaccgctacgatgtctacaacgacctcggctcccccgac 639
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cgaggtcttccccaccggcc 219 |||||||||||||||||||| Sbjct: 928242 cgaggtcttccccaccggcc 928223
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 40.1 bits (20), Expect = 7.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 400 aggagcacgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 |||||||||||||| ||||| |||||| || ||||| ||||| ||| ||||||| Sbjct: 44503 aggagcacgaccgcgtctaccgctacgatgtctacaacgacctcggctcccccgac 44558
>gb|AC113283.13| Mus musculus chromosome 3, clone RP23-397I12, complete sequence Length = 189865 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 452 cgacgacgacaacaaccccaccac 475 |||||||||||||||| ||||||| Sbjct: 50554 cgacgacgacaacaacaccaccac 50531
>gb|AY869505.1| Uncultured bacterium 311 clone G50-0138 16S ribosomal RNA gene, partial sequence Length = 457 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 gggttgcgcaagcgcgagctggag 368 |||||||| ||||||||||||||| Sbjct: 169 gggttgcgaaagcgcgagctggag 192
>gb|AY869499.1| Uncultured bacterium 311 clone G2K-0170 16S ribosomal RNA gene, partial sequence Length = 458 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 gggttgcgcaagcgcgagctggag 368 |||||||| ||||||||||||||| Sbjct: 170 gggttgcgaaagcgcgagctggag 193
>gb|AY869484.1| Uncultured bacterium 311 clone G2K-0058 16S ribosomal RNA gene, partial sequence Length = 456 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 gggttgcgcaagcgcgagctggag 368 |||||||| ||||||||||||||| Sbjct: 168 gggttgcgaaagcgcgagctggag 191
>ref|XM_950701.1| Neurospora crassa OR74A hypothetical protein (NCU01847.1) partial mRNA Length = 4464 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 329 gcccaagggcgtggaggggttgcgcaag 356 ||||||||||||||| ||||||| |||| Sbjct: 4395 gcccaagggcgtggatgggttgctcaag 4422
>ref|XM_328285.1| Neurospora crassa OR74A hypothetical protein (NCU01847.1) partial mRNA Length = 4464 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 329 gcccaagggcgtggaggggttgcgcaag 356 ||||||||||||||| ||||||| |||| Sbjct: 4395 gcccaagggcgtggatgggttgctcaag 4422
>gb|AC114684.10| Homo sapiens chromosome 18, clone RP11-1058N17, complete sequence Length = 196117 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 169 accaccacagcgagatgctgctgg 192 |||||||||| ||||||||||||| Sbjct: 191342 accaccacagggagatgctgctgg 191365
>gb|DQ009141.1| Uncultured marine bacterium clone SPOTSAUG01_5m95 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence Length = 1996 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 gggttgcgcaagcgcgagctggag 368 |||||||| ||||||||||||||| Sbjct: 1219 gggttgcgaaagcgcgagctggag 1242
>emb|AL138821.12| Human DNA sequence from clone RP11-381L18 on chromosome 13 Contains part of the ATP7B gene for ATPase Cu++ transporting, beta polypeptide (Wilson disease) and a fatty acid binding protein pseudogene, complete sequence Length = 41669 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 ccacaaacggggcaggagcgggag 50 |||| ||||||||||||||||||| Sbjct: 16581 ccaccaacggggcaggagcgggag 16604
>gb|AC093567.13| Homo sapiens chromosome 18, clone RP11-484L8, complete sequence Length = 174698 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 accaccacagcgagatgctgctgg 192 |||||||||| ||||||||||||| Sbjct: 63246 accaccacagggagatgctgctgg 63223
>emb|BX284754.1|NCB23G1 Neurospora crassa DNA linkage group II BAC contig B23G1 Length = 106111 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 329 gcccaagggcgtggaggggttgcgcaag 356 ||||||||||||||| ||||||| |||| Sbjct: 5159 gcccaagggcgtggatgggttgctcaag 5186
>gb|AF162435.1| Rotavirus A outer capsid protein VP7 (VP7) mRNA, complete cds Length = 994 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 acgactacgacgtgtacaat 437 |||||||||||||||||||| Sbjct: 718 acgactacgacgtgtacaat 737
>gb|U51118.1|NCU51118 Neurospora crassa NUC-2 (Nuc-2) gene, complete cds Length = 5408 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 329 gcccaagggcgtggaggggttgcgcaag 356 ||||||||||||||| ||||||| |||| Sbjct: 4507 gcccaagggcgtggatgggttgctcaag 4534
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 40.1 bits (20), Expect = 7.0 Identities = 47/56 (83%) Strand = Plus / Minus Query: 400 aggagcacgaccgcatctacgactacgacgtgtacaatgacctgggcaaccccgac 455 |||||||||||||| ||||| |||||| || ||||| ||||| ||| ||||||| Sbjct: 13520 aggagcacgaccgcgtctaccgctacgatgtctacaacgacctcggctcccccgac 13465
>emb|AJ400356.1|MBA400356 Uncultured marine bacterium ZD0433 16S rRNA gene Length = 1514 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 gggttgcgcaagcgcgagctggag 368 |||||||| ||||||||||||||| Sbjct: 1260 gggttgcgaaagcgcgagctggag 1283
>emb|AJ005067.1|USAJ5067 Unidentified soil organism 16S rRNA gene, clone 24 Length = 425 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 gggttgcgcaagcgcgagctggag 368 |||||||| ||||||||||||||| Sbjct: 284 gggttgcgaaagcgcgagctggag 307
>gb|DQ337067.1| Uncultured bacterium clone EV818SWSAP22 16S ribosomal RNA gene, partial sequence Length = 1496 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 gggttgcgcaagcgcgagctggag 368 |||||||| ||||||||||||||| Sbjct: 1239 gggttgcgaaagcgcgagctggag 1262
>emb|BX294705.2|CNS09S7Z Uncultured bacterium partial 16S rRNA gene from clone 025F10_P_BA_P3 Length = 1318 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 gggttgcgcaagcgcgagctggag 368 |||||||| ||||||||||||||| Sbjct: 1181 gggttgcgaaagcgcgagctggag 1204 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,871,888 Number of Sequences: 3902068 Number of extensions: 2871888 Number of successful extensions: 50723 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50359 Number of HSP's gapped (non-prelim): 364 length of query: 516 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 493 effective length of database: 17,143,297,704 effective search space: 8451645768072 effective search space used: 8451645768072 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
