>PCRA_MYCLE (Q9CD72) ATP-dependent DNA helicase pcrA (EC 3.6.1.-)|
          Length = 778

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = -1

Query: 376 TYSDSAEGFERNKGWLSNIFITRSGSLLYISFSIEASLW-----EPRSRMLRERPPK 221
           T  D  E  E  +  L+ + ITR+   LY+S +I  S W      P SR LRE PP+
Sbjct: 631 TLGDPTELSEERR--LAYVGITRARQRLYLSRAITRSSWGQPILNPESRFLREIPPE 685

>UVRB_BACCA (P56981) UvrABC system protein B (Protein uvrB) (Excinuclease ABC|
           subunit B)
          Length = 657

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 21/104 (20%), Positives = 44/104 (42%)
 Frame = +3

Query: 75  RVLSQAARNQSAYAIYNEXXXXXXXXXXXXDISAGGALRNLHERYHSSYFGGLSRSMRDL 254
           + + +AARN + + I               +     A++  + R H      + + +RD+
Sbjct: 535 QTIGRAARNANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDV 594

Query: 255 GSQSEASMLKEIYRSDPERVIKIFESQPLLRSNPSALSEYVKAL 386
              + A+   E+Y + P   +   E + L+R+  + + E  KAL
Sbjct: 595 IRATYAAEETEMYEAKPAAAMTKQEREELIRTLEAEMKEAAKAL 638

>UVRB_GEOKA (Q5KVB5) UvrABC system protein B (Protein uvrB) (Excinuclease ABC|
           subunit B)
          Length = 658

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 21/104 (20%), Positives = 44/104 (42%)
 Frame = +3

Query: 75  RVLSQAARNQSAYAIYNEXXXXXXXXXXXXDISAGGALRNLHERYHSSYFGGLSRSMRDL 254
           + + +AARN + + I               +     A++  + R H      + + +RD+
Sbjct: 536 QTIGRAARNANGHVIMYADTITKSMEVAIQETKRRRAIQEEYNRKHGIVPRTVKKEIRDV 595

Query: 255 GSQSEASMLKEIYRSDPERVIKIFESQPLLRSNPSALSEYVKAL 386
              + A+   E+Y + P   +   E + L+R+  + + E  KAL
Sbjct: 596 IRATYAAEETEMYEAKPAAAMTKQEREELIRTLEAEMKEAAKAL 639

>COX20_ASHGO (Q75D23) Cytochrome c oxidase protein 20, mitochondrial precursor|
          Length = 194

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 224 WWPFTQHARPGLPK*SFYAKRDIQK*P 304
           WWPF+++ +PG+P+    A   +Q+ P
Sbjct: 3   WWPFSRNNKPGVPEQDQVAAAPVQQRP 29

>SDS22_SCHPO (P22194) Protein phosphatases PP1 regulatory subunit sds22|
          Length = 332

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
 Frame = +3

Query: 210 HSSYFGGLSRSMRDLGSQSEASMLKEIYRSDPERVIK-----IFESQPLLRSNPSALSEY 374
           H SY  GL   +    S +E S  +EI   D    +K      FE  PL ++NP+     
Sbjct: 251 HLSYLAGLKNLVELWASNNELSSFQEI--EDELSGLKKLETVYFEGNPLQKTNPAVYRNK 308

Query: 375 VKALVKVDRLDDSTLL 422
           V+  +   R  D+T++
Sbjct: 309 VRLCLPQLRQIDATII 324

>CLH_DICDI (P25870) Clathrin heavy chain|
          Length = 1694

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 24/95 (25%), Positives = 44/95 (46%)
 Frame = +3

Query: 174 AGGALRNLHERYHSSYFGGLSRSMRDLGSQSEASMLKEIYRSDPERVIKIFESQPLLRSN 353
           A G L    ERY      G  +    + + S  S+L+ +      + I+ F+S P +   
Sbjct: 359 AEGLLTTQFERYFQQ---GQYKEAAKVAADSPGSILRNL------QTIQKFQSIPPIPDQ 409

Query: 354 PSALSEYVKALVKVDRLDDSTLLKTLQRGLAASER 458
           PSAL +Y   L++  +L+    L+ ++  LA  ++
Sbjct: 410 PSALLQYFGMLLEKGKLNKVESLELVRPVLAQGKK 444

>ADEC_ARCFU (O29999) Adenine deaminase (EC 3.5.4.2) (Adenase) (Adenine aminase)|
          Length = 556

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 23/85 (27%), Positives = 37/85 (43%)
 Frame = +3

Query: 183 ALRNLHERYHSSYFGGLSRSMRDLGSQSEASMLKEIYRSDPERVIKIFESQPLLRSNPSA 362
           AL+ L    H+       RS++D+    E   L  ++R   E  I   ++  +L  NP+ 
Sbjct: 253 ALKGLTGNRHTMLVTDGDRSVKDI---IEEGYLDHVFRRAIEEGIDEIKALQMLTLNPAE 309

Query: 363 LSEYVKALVKVDRLDDSTLLKTLQR 437
                  L+   RL D  LLK L++
Sbjct: 310 YFGINAGLIAPSRLADIVLLKNLRK 334

>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)|
          Length = 741

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +3

Query: 210 HSSYFGGLSRSMRDLGSQSEASMLKEIYRSDPERVIKIFESQPLLRSNPSA 362
           H  Y GG++     L   +   ++KEI+RSD E+ +K +    +++ N SA
Sbjct: 197 HKLYEGGVTLPTNFLSKYAPIPIVKEIFRSDGEQFLK-YPPPKVMQVNKSA 246

>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)|
          Length = 861

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 201 ERYHSSYFGGLSRSMRDLGSQSEASMLKEIYRSDPERVIK 320
           +  H  Y GG+      L   S   +LKEI+R+D E  +K
Sbjct: 309 DEVHGLYEGGIKLPTNILSQISPLPVLKEIFRTDGENTLK 348


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,202,474
Number of Sequences: 219361
Number of extensions: 1587859
Number of successful extensions: 5068
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5062
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)