ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bah63j07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK111511.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J05, full insert sequence Length = 2128 Score = 466 bits (235), Expect = e-128 Identities = 423/485 (87%), Gaps = 3/485 (0%) Strand = Plus / Plus Query: 146 tggcaaatgactttaggatgtggaggactgtctatggaacctggtccataccctgagcgt 205 |||||||||||||||||| |||||| ||||||||| | ||||||||||||||| Sbjct: 324 tggcaaatgactttagga---ggaggagagtctatggagtccactccataccctgagcgg 380 Query: 206 ataggagagcgtgattgcagttactatatgaggactggattttgtaggtttggggtaacc 265 |||||||||| || |||||||| ||||||||||||||| | |||||||||||| | ||| Sbjct: 381 ataggagagccagactgcagttattatatgaggactggactatgtaggtttgggatgacc 440 Query: 266 tgcaaattcaatcaccctgcagacaggaagctggctgttgctgctgcaaggatgaaaggc 325 ||||||||||||||||| || | || || |||||||||||||||||||||||||| || Sbjct: 441 tgcaaattcaatcaccccccaaatagaaaactggctgttgctgctgcaaggatgaatgga 500 Query: 326 gagtatccttacagagttggtcaacctgagtgtcaatattacctgaagactgggacatgc 385 ||||||||||| |||||||||||||||||||||||||| ||| |||| ||||| || ||| Sbjct: 501 gagtatccttatagagttggtcaacctgagtgtcaatactacttgaaaactggaacgtgc 560 Query: 386 aagtttggagcaacatgcaagttccatcatcccagagagaaggctgcaattgcaatctct 445 |||||||| |||||||||||||| ||||| ||||| |||||||||||| |||||| | | Sbjct: 561 aagtttggtgcaacatgcaagtttcatcaccccagggagaaggctgcacttgcaaaccgt 620 Query: 446 gcacagttgaatgttctaggctacccactgcgtttgaatgagaaggaatgtgtttattat 505 | |||||| ||||||||||||||||| ||||| ||||||||||||||||| ||| || Sbjct: 621 gtacagttaaatgttctaggctacccgatgcgtccgaatgagaaggaatgtgcttactac 680 Query: 506 ttaagaacagggcagtgtaagtttgcaagcacatgtaagtttcatcatccacaaccatct 565 |||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| Sbjct: 681 ttaagaacagggcagtgtaaatttgcaagcacatgtaagtttcatcatccacagccctct 740 Query: 566 agcacaatggttgctatacgtagctctatttgctcacctggacagtctacaacctctcct 625 | |||||||||||| |||| | |||||| | ||||||||||||||| ||||||||||| Sbjct: 741 aatacaatggttgctgtacggaactctatgtattcacctggacagtctgcaacctctcct 800 Query: 626 ggtca 630 ||||| Sbjct: 801 ggtca 805
>dbj|AK110345.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-164-G05, full insert sequence Length = 2873 Score = 325 bits (164), Expect = 1e-85 Identities = 368/436 (84%) Strand = Plus / Plus Query: 177 ctatggaacctggtccataccctgagcgtataggagagcgtgattgcagttactatatga 236 |||||||| |||| |||||||| |||||||| ||||| | ||||| ||||| || |||| Sbjct: 340 ctatggaagctgggccatacccagagcgtattggagaaccagattgtagttattacatga 399 Query: 237 ggactggattttgtaggtttggggtaacctgcaaattcaatcaccctgcagacaggaagc 296 ||||||| || || ||||||||| | ||||| ||||| |||||||| ||||| | ||| Sbjct: 400 ggactggcttgtgcaggtttgggatgacctgtaaatttaatcacccagcagatcgtaaga 459 Query: 297 tggctgttgctgctgcaaggatgaaaggcgagtatccttacagagttggtcaacctgagt 356 ||||||||||||||||||||||||| || || |||||| | ||| ||||||||||||| | Sbjct: 460 tggctgttgctgctgcaaggatgaagggggaatatcctcaaagaattggtcaacctgaat 519 Query: 357 gtcaatattacctgaagactgggacatgcaagtttggagcaacatgcaagttccatcatc 416 |||||||||| |||||||||| |||||||| |||||||||||||||||||| || || | Sbjct: 520 gtcaatattatttgaagactggaacatgcaaatttggagcaacatgcaagtttcaccacc 579 Query: 417 ccagagagaaggctgcaattgcaatctctgcacagttgaatgttctaggctacccactgc 476 || |||| || ||||||||||||| | | |||| |||||| | ||||||||||| ||| Sbjct: 580 cccgagaaaaagctgcaattgcaacccgagtacagctgaatgctttaggctacccattgc 639 Query: 477 gtttgaatgagaaggaatgtgtttattatttaagaacagggcagtgtaagtttgcaagca 536 | ||||||||||||||| | ||||||||||||||| || ||||| || |||| |||| Sbjct: 640 ggccgaatgagaaggaatgcgcttattatttaagaaccggacagtgcaaatttgggagca 699 Query: 537 catgtaagtttcatcatccacaaccatctagcacaatggttgctatacgtagctctattt 596 |||||||||||||||||||||| ||||||| || ||||||||| ||||| ||||| ||| Sbjct: 700 catgtaagtttcatcatccacagccatctaatacgatggttgctgtacgtggctctgttt 759 Query: 597 gctcacctggacagtc 612 |||||||||||||| Sbjct: 760 attcacctggacagtc 775 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 atgcaagttccatcatccca 419 |||||||||||||||||||| Sbjct: 1186 atgcaagttccatcatccca 1205
>gb|BT018914.1| Zea mays clone EL01T0403G12.d mRNA sequence Length = 1963 Score = 256 bits (129), Expect = 8e-65 Identities = 333/397 (83%), Gaps = 3/397 (0%) Strand = Plus / Plus Query: 233 atgaggactggattttgtaggtttggggtaacctgcaaattcaatcaccctgcagacagg 292 ||||||||||| | || ||||||||| | ||||| ||||| |||||||| |||||| | Sbjct: 370 atgaggactggcatgtgcaggtttgggatgacctgtaaatttaatcacccagcagaccga 429 Query: 293 aagctggctgttgctgctgcaaggatgaaaggcgagtatccttacagagttggtcaacct 352 ||||||||||||||||||||||| ||||| || || |||||| | ||| |||| || ||| Sbjct: 430 aagctggctgttgctgctgcaagaatgaagggagaatatcctcaaagaattgggcagcct 489 Query: 353 gagtgtcaatattacctgaagactgggacatgcaagtttggagcaacatgcaagttccat 412 || |||||||| || ||||||||||| || ||||||||||||||||| |||||||| ||| Sbjct: 490 gaatgtcaatactatctgaagactggcacgtgcaagtttggagcaacttgcaagtttcat 549 Query: 413 catcccagagagaaggctgcaattgcaatctc-tgcacagttgaatgttct-aggctacc 470 |||||| |||| ||||||||||| |||| ||| | |||||||||| || ||||||| Sbjct: 550 catccccgagaaaaggctgcaatggcaa-ctcgagttcagttgaatgaactggggctacc 608 Query: 471 cactgcgtttgaatgagaaggaatgtgtttattatttaagaacagggcagtgtaagtttg 530 |||| || |||||| || || |||| | ||||||||||||||||||||| ||||||| Sbjct: 609 cactccgcccgaatgaaaaagagtgtgccttttatttaagaacagggcagtgcaagtttg 668 Query: 531 caagcacatgtaagtttcatcatccacaaccatctagcacaatggttgctatacgtagct 590 |||||||||||||||||| ||| |||||||||| | || ||||||||| ||||| ||| Sbjct: 669 gaagcacatgtaagtttcaccattcacaaccatccaccatgatggttgctgtacgtggct 728 Query: 591 ctatttgctcacctggacagtctacaacctctcctgg 627 || ||| ||||||||||||||| |||| |||||||| Sbjct: 729 ctgtttattcacctggacagtctgcaacttctcctgg 765 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 atgcaagttccatcatcccag 420 ||||||||||||||||||||| Sbjct: 1159 atgcaagttccatcatcccag 1179
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 178 bits (90), Expect = 1e-41 Identities = 135/150 (90%) Strand = Plus / Plus Query: 481 gaatgagaaggaatgtgtttattatttaagaacagggcagtgtaagtttgcaagcacatg 540 ||||||||||||||||| ||| || |||||||||||||||||||| |||||||||||||| Sbjct: 12243387 gaatgagaaggaatgtgcttactacttaagaacagggcagtgtaaatttgcaagcacatg 12243446 Query: 541 taagtttcatcatccacaaccatctagcacaatggttgctatacgtagctctatttgctc 600 |||||||||||||||||| || |||| |||||||||||| |||| | |||||| | || Sbjct: 12243447 taagtttcatcatccacagccctctaatacaatggttgctgtacggaactctatgtattc 12243506 Query: 601 acctggacagtctacaacctctcctggtca 630 ||||||||||||| |||||||||||||||| Sbjct: 12243507 acctggacagtctgcaacctctcctggtca 12243536 Score = 117 bits (59), Expect = 5e-23 Identities = 118/137 (86%), Gaps = 3/137 (2%) Strand = Plus / Plus Query: 146 tggcaaatgactttaggatgtggaggactgtctatggaacctggtccataccctgagcgt 205 |||||||||||||||||| |||||| ||||||||| | ||||||||||||||| Sbjct: 12241286 tggcaaatgactttagga---ggaggagagtctatggagtccactccataccctgagcgg 12241342 Query: 206 ataggagagcgtgattgcagttactatatgaggactggattttgtaggtttggggtaacc 265 |||||||||| || |||||||| ||||||||||||||| | |||||||||||| | ||| Sbjct: 12241343 ataggagagccagactgcagttattatatgaggactggactatgtaggtttgggatgacc 12241402 Query: 266 tgcaaattcaatcaccc 282 ||||||||||||||||| Sbjct: 12241403 tgcaaattcaatcaccc 12241419 Score = 103 bits (52), Expect = 7e-19 Identities = 61/64 (95%) Strand = Plus / Plus Query: 298 ggctgttgctgctgcaaggatgaaaggcgagtatccttacagagttggtcaacctgagtg 357 |||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| Sbjct: 12242399 ggctgttgctgctgcaaggatgaatggagagtatccttatagagttggtcaacctgagtg 12242458 Query: 358 tcaa 361 |||| Sbjct: 12242459 tcaa 12242462 Score = 101 bits (51), Expect = 3e-18 Identities = 90/103 (87%) Strand = Plus / Plus Query: 369 tgaagactgggacatgcaagtttggagcaacatgcaagttccatcatcccagagagaagg 428 |||| ||||| || ||||||||||| |||||||||||||| ||||| ||||| ||||||| Sbjct: 12243156 tgaaaactggaacgtgcaagtttggtgcaacatgcaagtttcatcaccccagggagaagg 12243215 Query: 429 ctgcaattgcaatctctgcacagttgaatgttctaggctaccc 471 ||||| |||||| | || |||||| ||||||||||||||||| Sbjct: 12243216 ctgcacttgcaaaccgtgtacagttaaatgttctaggctaccc 12243258 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 gggagcggcagcgggcggtg 74 |||||||||||||||||||| Sbjct: 568455 gggagcggcagcgggcggtg 568436
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 178 bits (90), Expect = 1e-41 Identities = 135/150 (90%) Strand = Plus / Plus Query: 481 gaatgagaaggaatgtgtttattatttaagaacagggcagtgtaagtttgcaagcacatg 540 ||||||||||||||||| ||| || |||||||||||||||||||| |||||||||||||| Sbjct: 12197757 gaatgagaaggaatgtgcttactacttaagaacagggcagtgtaaatttgcaagcacatg 12197816 Query: 541 taagtttcatcatccacaaccatctagcacaatggttgctatacgtagctctatttgctc 600 |||||||||||||||||| || |||| |||||||||||| |||| | |||||| | || Sbjct: 12197817 taagtttcatcatccacagccctctaatacaatggttgctgtacggaactctatgtattc 12197876 Query: 601 acctggacagtctacaacctctcctggtca 630 ||||||||||||| |||||||||||||||| Sbjct: 12197877 acctggacagtctgcaacctctcctggtca 12197906 Score = 117 bits (59), Expect = 5e-23 Identities = 118/137 (86%), Gaps = 3/137 (2%) Strand = Plus / Plus Query: 146 tggcaaatgactttaggatgtggaggactgtctatggaacctggtccataccctgagcgt 205 |||||||||||||||||| |||||| ||||||||| | ||||||||||||||| Sbjct: 12195656 tggcaaatgactttagga---ggaggagagtctatggagtccactccataccctgagcgg 12195712 Query: 206 ataggagagcgtgattgcagttactatatgaggactggattttgtaggtttggggtaacc 265 |||||||||| || |||||||| ||||||||||||||| | |||||||||||| | ||| Sbjct: 12195713 ataggagagccagactgcagttattatatgaggactggactatgtaggtttgggatgacc 12195772 Query: 266 tgcaaattcaatcaccc 282 ||||||||||||||||| Sbjct: 12195773 tgcaaattcaatcaccc 12195789 Score = 103 bits (52), Expect = 7e-19 Identities = 61/64 (95%) Strand = Plus / Plus Query: 298 ggctgttgctgctgcaaggatgaaaggcgagtatccttacagagttggtcaacctgagtg 357 |||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| Sbjct: 12196769 ggctgttgctgctgcaaggatgaatggagagtatccttatagagttggtcaacctgagtg 12196828 Query: 358 tcaa 361 |||| Sbjct: 12196829 tcaa 12196832 Score = 101 bits (51), Expect = 3e-18 Identities = 90/103 (87%) Strand = Plus / Plus Query: 369 tgaagactgggacatgcaagtttggagcaacatgcaagttccatcatcccagagagaagg 428 |||| ||||| || ||||||||||| |||||||||||||| ||||| ||||| ||||||| Sbjct: 12197526 tgaaaactggaacgtgcaagtttggtgcaacatgcaagtttcatcaccccagggagaagg 12197585 Query: 429 ctgcaattgcaatctctgcacagttgaatgttctaggctaccc 471 ||||| |||||| | || |||||| ||||||||||||||||| Sbjct: 12197586 ctgcacttgcaaaccgtgtacagttaaatgttctaggctaccc 12197628 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 gggagcggcagcgggcggtg 74 |||||||||||||||||||| Sbjct: 568455 gggagcggcagcgggcggtg 568436
>emb|AL713955.4|CNS07YP3 Oryza sativa chromosome 12, . BAC OSJNBa0017L03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159296 Score = 178 bits (90), Expect = 1e-41 Identities = 135/150 (90%) Strand = Plus / Minus Query: 481 gaatgagaaggaatgtgtttattatttaagaacagggcagtgtaagtttgcaagcacatg 540 ||||||||||||||||| ||| || |||||||||||||||||||| |||||||||||||| Sbjct: 53930 gaatgagaaggaatgtgcttactacttaagaacagggcagtgtaaatttgcaagcacatg 53871 Query: 541 taagtttcatcatccacaaccatctagcacaatggttgctatacgtagctctatttgctc 600 |||||||||||||||||| || |||| |||||||||||| |||| | |||||| | || Sbjct: 53870 taagtttcatcatccacagccctctaatacaatggttgctgtacggaactctatgtattc 53811 Query: 601 acctggacagtctacaacctctcctggtca 630 ||||||||||||| |||||||||||||||| Sbjct: 53810 acctggacagtctgcaacctctcctggtca 53781 Score = 117 bits (59), Expect = 5e-23 Identities = 118/137 (86%), Gaps = 3/137 (2%) Strand = Plus / Minus Query: 146 tggcaaatgactttaggatgtggaggactgtctatggaacctggtccataccctgagcgt 205 |||||||||||||||||| |||||| ||||||||| | ||||||||||||||| Sbjct: 56031 tggcaaatgactttagga---ggaggagagtctatggagtccactccataccctgagcgg 55975 Query: 206 ataggagagcgtgattgcagttactatatgaggactggattttgtaggtttggggtaacc 265 |||||||||| || |||||||| ||||||||||||||| | |||||||||||| | ||| Sbjct: 55974 ataggagagccagactgcagttattatatgaggactggactatgtaggtttgggatgacc 55915 Query: 266 tgcaaattcaatcaccc 282 ||||||||||||||||| Sbjct: 55914 tgcaaattcaatcaccc 55898 Score = 103 bits (52), Expect = 7e-19 Identities = 61/64 (95%) Strand = Plus / Minus Query: 298 ggctgttgctgctgcaaggatgaaaggcgagtatccttacagagttggtcaacctgagtg 357 |||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| Sbjct: 54918 ggctgttgctgctgcaaggatgaatggagagtatccttatagagttggtcaacctgagtg 54859 Query: 358 tcaa 361 |||| Sbjct: 54858 tcaa 54855 Score = 101 bits (51), Expect = 3e-18 Identities = 90/103 (87%) Strand = Plus / Minus Query: 369 tgaagactgggacatgcaagtttggagcaacatgcaagttccatcatcccagagagaagg 428 |||| ||||| || ||||||||||| |||||||||||||| ||||| ||||| ||||||| Sbjct: 54161 tgaaaactggaacgtgcaagtttggtgcaacatgcaagtttcatcaccccagggagaagg 54102 Query: 429 ctgcaattgcaatctctgcacagttgaatgttctaggctaccc 471 ||||| |||||| | || |||||| ||||||||||||||||| Sbjct: 54101 ctgcacttgcaaaccgtgtacagttaaatgttctaggctaccc 54059
>gb|AC136786.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0027P09, complete sequence Length = 171861 Score = 127 bits (64), Expect = 5e-26 Identities = 115/132 (87%) Strand = Plus / Minus Query: 481 gaatgagaaggaatgtgtttattatttaagaacagggcagtgtaagtttgcaagcacatg 540 ||||||||||||||| | ||||||||||||||| || ||||| || |||| |||||||| Sbjct: 79408 gaatgagaaggaatgcgcttattatttaagaaccggacagtgcaaatttgggagcacatg 79349 Query: 541 taagtttcatcatccacaaccatctagcacaatggttgctatacgtagctctatttgctc 600 |||||||||||||||||| ||||||| || ||||||||| ||||| ||||| ||| || Sbjct: 79348 taagtttcatcatccacagccatctaatacgatggttgctgtacgtggctctgtttattc 79289 Query: 601 acctggacagtc 612 |||||||||||| Sbjct: 79288 acctggacagtc 79277 Score = 81.8 bits (41), Expect = 3e-12 Identities = 92/109 (84%) Strand = Plus / Minus Query: 369 tgaagactgggacatgcaagtttggagcaacatgcaagttccatcatcccagagagaagg 428 |||||||||| |||||||| |||||||||||||||||||| || || ||| |||| || | Sbjct: 79635 tgaagactggaacatgcaaatttggagcaacatgcaagtttcaccacccccgagaaaaag 79576 Query: 429 ctgcaattgcaatctctgcacagttgaatgttctaggctacccactgcg 477 |||||||||||| | | |||| |||||| | ||||||||||| |||| Sbjct: 79575 ctgcaattgcaacccgagtacagctgaatgctttaggctacccattgcg 79527 Score = 79.8 bits (40), Expect = 1e-11 Identities = 94/112 (83%) Strand = Plus / Minus Query: 177 ctatggaacctggtccataccctgagcgtataggagagcgtgattgcagttactatatga 236 |||||||| |||| |||||||| |||||||| ||||| | ||||| ||||| || |||| Sbjct: 81190 ctatggaagctgggccatacccagagcgtattggagaaccagattgtagttattacatga 81131 Query: 237 ggactggattttgtaggtttggggtaacctgcaaattcaatcaccctgcaga 288 ||||||| || || ||||||||| | ||||| ||||| |||||||| ||||| Sbjct: 81130 ggactggcttgtgcaggtttgggatgacctgtaaatttaatcacccagcaga 81079 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 298 ggctgttgctgctgcaaggatgaaaggcgagtatccttacagagttggtcaacctgagtg 357 |||||||||||||||||||||||| || || |||||| | ||| ||||||||||||| || Sbjct: 80558 ggctgttgctgctgcaaggatgaagggggaatatcctcaaagaattggtcaacctgaatg 80499 Query: 358 tcaa 361 |||| Sbjct: 80498 tcaa 80495 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 atgcaagttccatcatccca 419 |||||||||||||||||||| Sbjct: 78114 atgcaagttccatcatccca 78095
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 127 bits (64), Expect = 5e-26 Identities = 115/132 (87%) Strand = Plus / Minus Query: 481 gaatgagaaggaatgtgtttattatttaagaacagggcagtgtaagtttgcaagcacatg 540 ||||||||||||||| | ||||||||||||||| || ||||| || |||| |||||||| Sbjct: 15669727 gaatgagaaggaatgcgcttattatttaagaaccggacagtgcaaatttgggagcacatg 15669668 Query: 541 taagtttcatcatccacaaccatctagcacaatggttgctatacgtagctctatttgctc 600 |||||||||||||||||| ||||||| || ||||||||| ||||| ||||| ||| || Sbjct: 15669667 taagtttcatcatccacagccatctaatacgatggttgctgtacgtggctctgtttattc 15669608 Query: 601 acctggacagtc 612 |||||||||||| Sbjct: 15669607 acctggacagtc 15669596 Score = 81.8 bits (41), Expect = 3e-12 Identities = 92/109 (84%) Strand = Plus / Minus Query: 369 tgaagactgggacatgcaagtttggagcaacatgcaagttccatcatcccagagagaagg 428 |||||||||| |||||||| |||||||||||||||||||| || || ||| |||| || | Sbjct: 15669954 tgaagactggaacatgcaaatttggagcaacatgcaagtttcaccacccccgagaaaaag 15669895 Query: 429 ctgcaattgcaatctctgcacagttgaatgttctaggctacccactgcg 477 |||||||||||| | | |||| |||||| | ||||||||||| |||| Sbjct: 15669894 ctgcaattgcaacccgagtacagctgaatgctttaggctacccattgcg 15669846 Score = 79.8 bits (40), Expect = 1e-11 Identities = 94/112 (83%) Strand = Plus / Minus Query: 177 ctatggaacctggtccataccctgagcgtataggagagcgtgattgcagttactatatga 236 |||||||| |||| |||||||| |||||||| ||||| | ||||| ||||| || |||| Sbjct: 15671509 ctatggaagctgggccatacccagagcgtattggagaaccagattgtagttattacatga 15671450 Query: 237 ggactggattttgtaggtttggggtaacctgcaaattcaatcaccctgcaga 288 ||||||| || || ||||||||| | ||||| ||||| |||||||| ||||| Sbjct: 15671449 ggactggcttgtgcaggtttgggatgacctgtaaatttaatcacccagcaga 15671398 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 298 ggctgttgctgctgcaaggatgaaaggcgagtatccttacagagttggtcaacctgagtg 357 |||||||||||||||||||||||| || || |||||| | ||| ||||||||||||| || Sbjct: 15670877 ggctgttgctgctgcaaggatgaagggggaatatcctcaaagaattggtcaacctgaatg 15670818 Query: 358 tcaa 361 |||| Sbjct: 15670817 tcaa 15670814 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 atgcaagttccatcatccca 419 |||||||||||||||||||| Sbjct: 15668433 atgcaagttccatcatccca 15668414
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 127 bits (64), Expect = 5e-26 Identities = 115/132 (87%) Strand = Plus / Minus Query: 481 gaatgagaaggaatgtgtttattatttaagaacagggcagtgtaagtttgcaagcacatg 540 ||||||||||||||| | ||||||||||||||| || ||||| || |||| |||||||| Sbjct: 15757104 gaatgagaaggaatgcgcttattatttaagaaccggacagtgcaaatttgggagcacatg 15757045 Query: 541 taagtttcatcatccacaaccatctagcacaatggttgctatacgtagctctatttgctc 600 |||||||||||||||||| ||||||| || ||||||||| ||||| ||||| ||| || Sbjct: 15757044 taagtttcatcatccacagccatctaatacgatggttgctgtacgtggctctgtttattc 15756985 Query: 601 acctggacagtc 612 |||||||||||| Sbjct: 15756984 acctggacagtc 15756973 Score = 81.8 bits (41), Expect = 3e-12 Identities = 92/109 (84%) Strand = Plus / Minus Query: 369 tgaagactgggacatgcaagtttggagcaacatgcaagttccatcatcccagagagaagg 428 |||||||||| |||||||| |||||||||||||||||||| || || ||| |||| || | Sbjct: 15757331 tgaagactggaacatgcaaatttggagcaacatgcaagtttcaccacccccgagaaaaag 15757272 Query: 429 ctgcaattgcaatctctgcacagttgaatgttctaggctacccactgcg 477 |||||||||||| | | |||| |||||| | ||||||||||| |||| Sbjct: 15757271 ctgcaattgcaacccgagtacagctgaatgctttaggctacccattgcg 15757223 Score = 79.8 bits (40), Expect = 1e-11 Identities = 94/112 (83%) Strand = Plus / Minus Query: 177 ctatggaacctggtccataccctgagcgtataggagagcgtgattgcagttactatatga 236 |||||||| |||| |||||||| |||||||| ||||| | ||||| ||||| || |||| Sbjct: 15758886 ctatggaagctgggccatacccagagcgtattggagaaccagattgtagttattacatga 15758827 Query: 237 ggactggattttgtaggtttggggtaacctgcaaattcaatcaccctgcaga 288 ||||||| || || ||||||||| | ||||| ||||| |||||||| ||||| Sbjct: 15758826 ggactggcttgtgcaggtttgggatgacctgtaaatttaatcacccagcaga 15758775 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 298 ggctgttgctgctgcaaggatgaaaggcgagtatccttacagagttggtcaacctgagtg 357 |||||||||||||||||||||||| || || |||||| | ||| ||||||||||||| || Sbjct: 15758254 ggctgttgctgctgcaaggatgaagggggaatatcctcaaagaattggtcaacctgaatg 15758195 Query: 358 tcaa 361 |||| Sbjct: 15758194 tcaa 15758191 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 atgcaagttccatcatccca 419 |||||||||||||||||||| Sbjct: 15755810 atgcaagttccatcatccca 15755791
>ref|NM_189952.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1263 Score = 89.7 bits (45), Expect = 1e-14 Identities = 81/93 (87%) Strand = Plus / Plus Query: 347 caacctgagtgtcaatattacctgaagactgggacatgcaagtttggagcaacatgcaag 406 ||||| || ||||| ||||| ||||||||||| |||||||||||||| | |||||||| Sbjct: 250 caaccagaatgtcagtattatctgaagactggaacatgcaagtttgggcctacatgcaaa 309 Query: 407 ttccatcatcccagagagaaggctgcaattgca 439 ||||||||||||||||| || |||| ||||||| Sbjct: 310 ttccatcatcccagagaaaaagctggaattgca 342
>dbj|AK112102.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-B05, full insert sequence Length = 1733 Score = 89.7 bits (45), Expect = 1e-14 Identities = 81/93 (87%) Strand = Plus / Plus Query: 347 caacctgagtgtcaatattacctgaagactgggacatgcaagtttggagcaacatgcaag 406 ||||| || ||||| ||||| ||||||||||| |||||||||||||| | |||||||| Sbjct: 134 caaccagaatgtcagtattatctgaagactggaacatgcaagtttgggcctacatgcaaa 193 Query: 407 ttccatcatcccagagagaaggctgcaattgca 439 ||||||||||||||||| || |||| ||||||| Sbjct: 194 ttccatcatcccagagaaaaagctggaattgca 226
>dbj|AK098948.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050D10, full insert sequence Length = 1656 Score = 89.7 bits (45), Expect = 1e-14 Identities = 81/93 (87%) Strand = Plus / Plus Query: 347 caacctgagtgtcaatattacctgaagactgggacatgcaagtttggagcaacatgcaag 406 ||||| || ||||| ||||| ||||||||||| |||||||||||||| | |||||||| Sbjct: 533 caaccagaatgtcagtattatctgaagactggaacatgcaagtttgggcctacatgcaaa 592 Query: 407 ttccatcatcccagagagaaggctgcaattgca 439 ||||||||||||||||| || |||| ||||||| Sbjct: 593 ttccatcatcccagagaaaaagctggaattgca 625
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 362 tattacctgaagactgggacatgcaagtttggagcaacatgcaagttccatcatcccaga 421 ||||| ||||||||||| |||||||||||||| | |||||||| ||||||||||||||| Sbjct: 40002231 tattatctgaagactggaacatgcaagtttgggcctacatgcaaattccatcatcccaga 40002172 Query: 422 gagaaggctgcaattgca 439 || || |||| ||||||| Sbjct: 40002171 gaaaaagctggaattgca 40002154 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 369 tgaagactgggacatgcaagtttggagcaacatgcaagttccatcatcc 417 |||||||||| | ||||||||||||| | | |||||||||| ||||||| Sbjct: 24471595 tgaagactggtaaatgcaagtttggatcgaaatgcaagttcaatcatcc 24471547 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 52 ggcgggagcggcagcgggcgg 72 ||||||||||||||||||||| Sbjct: 28329276 ggcgggagcggcagcgggcgg 28329296 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 362 tattacctgaagactgggacatgcaagtttgg 393 |||||| ||||||||||||| ||||| ||||| Sbjct: 8661897 tattacatgaagactgggacttgcaaatttgg 8661866
>dbj|AP003451.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0413C03 Length = 162161 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 362 tattacctgaagactgggacatgcaagtttggagcaacatgcaagttccatcatcccaga 421 ||||| ||||||||||| |||||||||||||| | |||||||| ||||||||||||||| Sbjct: 93682 tattatctgaagactggaacatgcaagtttgggcctacatgcaaattccatcatcccaga 93623 Query: 422 gagaaggctgcaattgca 439 || || |||| ||||||| Sbjct: 93622 gaaaaagctggaattgca 93605
>gb|BT023972.1| Zea mays clone EL01N0401B01 mRNA sequence Length = 1490 Score = 77.8 bits (39), Expect = 4e-11 Identities = 174/219 (79%) Strand = Plus / Plus Query: 221 tgcagttactatatgaggactggattttgtaggtttggggtaacctgcaaattcaatcac 280 |||| ||||||| | ||||||||||| ||| | ||||| | | |||| ||||||||| Sbjct: 356 tgcacttactatctcaggactggattgtgtcgatttggcatgagctgccgattcaatcat 415 Query: 281 cctgcagacaggaagctggctgttgctgctgcaaggatgaaaggcgagtatccttacaga 340 ||| | || ||||| |||||| |||| |||| || ||||| || || ||| || | ||| Sbjct: 416 cctcccgataggaatctggctattgcctctgccagaatgaagggagaatattctgagaga 475 Query: 341 gttggtcaacctgagtgtcaatattacctgaagactgggacatgcaagtttggagcaaca 400 | || || || |||||||| ||||| ||||||||||| |||||||||||||| | ||| Sbjct: 476 gcaggacagccagagtgtcagtattatctgaagactggaacatgcaagtttggccctaca 535 Query: 401 tgcaagttccatcatcccagagagaaggctgcaattgca 439 ||||| || || |||||||| || ||||||| ||||||| Sbjct: 536 tgcaaatttcaccatcccagggaaaaggctggaattgca 574
>ref|NM_121660.3| Arabidopsis thaliana ZFN3 (ZINC FINGER PROTEIN 3); nucleic acid binding AT5G16540 (ZFN3) transcript variant AT5G16540.2 mRNA, complete cds Length = 1330 Score = 56.0 bits (28), Expect = 1e-04 Identities = 148/188 (78%) Strand = Plus / Plus Query: 230 tatatgaggactggattttgtaggtttggggtaacctgcaaattcaatcaccctgcagac 289 ||||| ||||||||| ||||||||||||| ||| ||| ||||||||| ||| ||| Sbjct: 261 tatataaggactggactttgtaggtttggttcaacttgccgattcaatcatcctcacgac 320 Query: 290 aggaagctggctgttgctgctgcaaggatgaaaggcgagtatccttacagagttggtcaa 349 |||| |||| | | || |||||||||| ||||| || || ||| | ||| ||||||| Sbjct: 321 cggaaactggttatagcaactgcaaggattaaaggagaataccctgaaagaattggtcag 380 Query: 350 cctgagtgtcaatattacctgaagactgggacatgcaagtttggagcaacatgcaagttc 409 ||||| ||| | | ||| |||||||| ||||| ||||| || |||| || |||||||| Sbjct: 381 cctgaatgtgagttttatctgaagacagggacctgcaaattcggagtgacttgcaagttt 440 Query: 410 catcatcc 417 |||||||| Sbjct: 441 catcatcc 448
>ref|NM_203061.1| Arabidopsis thaliana ZFN3 (ZINC FINGER PROTEIN 3); nucleic acid binding AT5G16540 (ZFN3) transcript variant AT5G16540.3 mRNA, complete cds Length = 1559 Score = 56.0 bits (28), Expect = 1e-04 Identities = 148/188 (78%) Strand = Plus / Plus Query: 230 tatatgaggactggattttgtaggtttggggtaacctgcaaattcaatcaccctgcagac 289 ||||| ||||||||| ||||||||||||| ||| ||| ||||||||| ||| ||| Sbjct: 462 tatataaggactggactttgtaggtttggttcaacttgccgattcaatcatcctcacgac 521 Query: 290 aggaagctggctgttgctgctgcaaggatgaaaggcgagtatccttacagagttggtcaa 349 |||| |||| | | || |||||||||| ||||| || || ||| | ||| ||||||| Sbjct: 522 cggaaactggttatagcaactgcaaggattaaaggagaataccctgaaagaattggtcag 581 Query: 350 cctgagtgtcaatattacctgaagactgggacatgcaagtttggagcaacatgcaagttc 409 ||||| ||| | | ||| |||||||| ||||| ||||| || |||| || |||||||| Sbjct: 582 cctgaatgtgagttttatctgaagacagggacctgcaaattcggagtgacttgcaagttt 641 Query: 410 catcatcc 417 |||||||| Sbjct: 642 catcatcc 649
>ref|NM_180710.2| Arabidopsis thaliana ZFN3 (ZINC FINGER PROTEIN 3); nucleic acid binding AT5G16540 (ZFN3) transcript variant AT5G16540.1 mRNA, complete cds Length = 1497 Score = 56.0 bits (28), Expect = 1e-04 Identities = 148/188 (78%) Strand = Plus / Plus Query: 230 tatatgaggactggattttgtaggtttggggtaacctgcaaattcaatcaccctgcagac 289 ||||| ||||||||| ||||||||||||| ||| ||| ||||||||| ||| ||| Sbjct: 400 tatataaggactggactttgtaggtttggttcaacttgccgattcaatcatcctcacgac 459 Query: 290 aggaagctggctgttgctgctgcaaggatgaaaggcgagtatccttacagagttggtcaa 349 |||| |||| | | || |||||||||| ||||| || || ||| | ||| ||||||| Sbjct: 460 cggaaactggttatagcaactgcaaggattaaaggagaataccctgaaagaattggtcag 519 Query: 350 cctgagtgtcaatattacctgaagactgggacatgcaagtttggagcaacatgcaagttc 409 ||||| ||| | | ||| |||||||| ||||| ||||| || |||| || |||||||| Sbjct: 520 cctgaatgtgagttttatctgaagacagggacctgcaaattcggagtgacttgcaagttt 579 Query: 410 catcatcc 417 |||||||| Sbjct: 580 catcatcc 587
>emb|BX831982.1|CNS09ZQQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH43ZE12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1515 Score = 56.0 bits (28), Expect = 1e-04 Identities = 148/188 (78%) Strand = Plus / Plus Query: 230 tatatgaggactggattttgtaggtttggggtaacctgcaaattcaatcaccctgcagac 289 ||||| ||||||||| ||||||||||||| ||| ||| ||||||||| ||| ||| Sbjct: 462 tatataaggactggactttgtaggtttggttcaacttgccgattcaatcatcctcacgac 521 Query: 290 aggaagctggctgttgctgctgcaaggatgaaaggcgagtatccttacagagttggtcaa 349 |||| |||| | | || |||||||||| ||||| || || ||| | ||| ||||||| Sbjct: 522 cggaaactggttatagcaactgcaaggattaaaggagaataccctgaaagaattggtcag 581 Query: 350 cctgagtgtcaatattacctgaagactgggacatgcaagtttggagcaacatgcaagttc 409 ||||| ||| | | ||| |||||||| ||||| ||||| || |||| || |||||||| Sbjct: 582 cctgaatgtgagttttatctgaagacagggacctgcaaattcggagtgacttgcaagttt 641 Query: 410 catcatcc 417 |||||||| Sbjct: 642 catcatcc 649
>emb|BX830990.1|CNS09ZHS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS46ZE06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1366 Score = 56.0 bits (28), Expect = 1e-04 Identities = 148/188 (78%) Strand = Plus / Plus Query: 230 tatatgaggactggattttgtaggtttggggtaacctgcaaattcaatcaccctgcagac 289 ||||| ||||||||| ||||||||||||| ||| ||| ||||||||| ||| ||| Sbjct: 291 tatataaggactggactttgtaggtttggttcaacttgccgattcaatcatcctcacgac 350 Query: 290 aggaagctggctgttgctgctgcaaggatgaaaggcgagtatccttacagagttggtcaa 349 |||| |||| | | || |||||||||| ||||| || || ||| | ||| ||||||| Sbjct: 351 cggaaactggttatagcaactgcaaggattaaaggagaataccctgaaagaattggtcag 410 Query: 350 cctgagtgtcaatattacctgaagactgggacatgcaagtttggagcaacatgcaagttc 409 ||||| ||| | | ||| |||||||| ||||| ||||| || |||| || |||||||| Sbjct: 411 cctgaatgtgagttttatctgaagacagggacctgcaaattcggagtgacttgcaagttt 470 Query: 410 catcatcc 417 |||||||| Sbjct: 471 catcatcc 478
>gb|AY084634.1| Arabidopsis thaliana clone 113763 mRNA, complete sequence Length = 1406 Score = 56.0 bits (28), Expect = 1e-04 Identities = 148/188 (78%) Strand = Plus / Plus Query: 230 tatatgaggactggattttgtaggtttggggtaacctgcaaattcaatcaccctgcagac 289 ||||| ||||||||| ||||||||||||| ||| ||| ||||||||| ||| ||| Sbjct: 308 tatataaggactggactttgtaggtttggttcaacttgccgattcaatcatcctcacgac 367 Query: 290 aggaagctggctgttgctgctgcaaggatgaaaggcgagtatccttacagagttggtcaa 349 |||| |||| | | || |||||||||| ||||| || || ||| | ||| ||||||| Sbjct: 368 cggaaactggttatagcaactgcaaggattaaaggagaataccctgaaagaattggtcag 427 Query: 350 cctgagtgtcaatattacctgaagactgggacatgcaagtttggagcaacatgcaagttc 409 ||||| ||| | | ||| |||||||| ||||| ||||| || |||| || |||||||| Sbjct: 428 cctgaatgtgagttttatctgaagacagggacctgcaaattcggagtgacttgcaagttt 487 Query: 410 catcatcc 417 |||||||| Sbjct: 488 catcatcc 495
>gb|AF138872.1|AF138872 Arabidopsis thaliana zinc finger protein 3 (ZFN3) mRNA, complete cds Length = 1238 Score = 56.0 bits (28), Expect = 1e-04 Identities = 148/188 (78%) Strand = Plus / Plus Query: 230 tatatgaggactggattttgtaggtttggggtaacctgcaaattcaatcaccctgcagac 289 ||||| ||||||||| ||||||||||||| ||| ||| ||||||||| ||| ||| Sbjct: 151 tatataaggactggactttgtaggtttggttcaacttgccgattcaatcatcctcacgac 210 Query: 290 aggaagctggctgttgctgctgcaaggatgaaaggcgagtatccttacagagttggtcaa 349 |||| |||| | | || |||||||||| ||||| || || ||| | ||| ||||||| Sbjct: 211 cggaaactggttatagcaactgcaaggattaaaggagaataccctgaaagaattggtcag 270 Query: 350 cctgagtgtcaatattacctgaagactgggacatgcaagtttggagcaacatgcaagttc 409 ||||| ||| | | ||| |||||||| ||||| ||||| || |||| || |||||||| Sbjct: 271 cctgaatgtgagttttatctgaagacagggacctgcaaattcggagtgacttgcaagttt 330 Query: 410 catcatcc 417 |||||||| Sbjct: 331 catcatcc 338
>ref|NM_111151.3| Arabidopsis thaliana ZFN1 (ZINC FINGER PROTEIN 1); nucleic acid binding AT3G02830 (ZFN1) mRNA, complete cds Length = 1658 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Plus Query: 369 tgaagactgggacatgcaagtttggagcaacatgcaagttccatcatcc 417 ||||||| || || ||||||||||||| |||||| ||||| |||||||| Sbjct: 520 tgaagacaggaacctgcaagtttggagtaacatgtaagtttcatcatcc 568 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 536 acatgtaagtttcatcatcca 556 ||||||||||||||||||||| Sbjct: 549 acatgtaagtttcatcatcca 569
>ref|NM_192796.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2118 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Plus Query: 369 tgaagactgggacatgcaagtttggagcaacatgcaagttccatcatcc 417 |||||||||| | ||||||||||||| | | |||||||||| ||||||| Sbjct: 857 tgaagactggtaaatgcaagtttggatcgaaatgcaagttcaatcatcc 905
>gb|DQ226900.1| Boechera divaricarpa isolate SLW-D-F09 mRNA sequence Length = 389 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Plus Query: 369 tgaagactgggacatgcaagtttggagcaacatgcaagttccatcatcc 417 ||||||| || || ||||||||||||| |||||| ||||| |||||||| Sbjct: 7 tgaagacaggaacctgcaagtttggagtaacatgtaagtttcatcatcc 55 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 536 acatgtaagtttcatcatcc 555 |||||||||||||||||||| Sbjct: 36 acatgtaagtttcatcatcc 55
>gb|AC018363.8|ATAC018363 Arabidopsis thaliana chromosome III BAC F13E7 genomic sequence, complete sequence Length = 100559 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 369 tgaagactgggacatgcaagtttggagcaacatgcaagttccatcatcc 417 ||||||| || || ||||||||||||| |||||| ||||| |||||||| Sbjct: 71574 tgaagacaggaacctgcaagtttggagtaacatgtaagtttcatcatcc 71526 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 536 acatgtaagtttcatcatcca 556 ||||||||||||||||||||| Sbjct: 71545 acatgtaagtttcatcatcca 71525
>emb|BX822532.1|CNS0A63L Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB46ZG09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1549 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Plus Query: 369 tgaagactgggacatgcaagtttggagcaacatgcaagttccatcatcc 417 ||||||| || || ||||||||||||| |||||| ||||| |||||||| Sbjct: 471 tgaagacaggaacctgcaagtttggagtaacatgtaagtttcatcatcc 519 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 536 acatgtaagtttcatcatcca 556 ||||||||||||||||||||| Sbjct: 500 acatgtaagtttcatcatcca 520
>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0686E09 Length = 156425 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 369 tgaagactgggacatgcaagtttggagcaacatgcaagttccatcatcc 417 |||||||||| | ||||||||||||| | | |||||||||| ||||||| Sbjct: 51979 tgaagactggtaaatgcaagtttggatcgaaatgcaagttcaatcatcc 51931
>dbj|AK117978.1| Arabidopsis thaliana At3g02830 mRNA for putative zinc finger protein 1 (zfn1), complete cds, clone: RAFL19-18-D10 Length = 1626 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Plus Query: 369 tgaagactgggacatgcaagtttggagcaacatgcaagttccatcatcc 417 ||||||| || || ||||||||||||| |||||| ||||| |||||||| Sbjct: 488 tgaagacaggaacctgcaagtttggagtaacatgtaagtttcatcatcc 536 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 536 acatgtaagtttcatcatcca 556 ||||||||||||||||||||| Sbjct: 517 acatgtaagtttcatcatcca 537
>dbj|AK112116.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-E06, full insert sequence Length = 1768 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Plus Query: 369 tgaagactgggacatgcaagtttggagcaacatgcaagttccatcatcc 417 |||||||||| | ||||||||||||| | | |||||||||| ||||||| Sbjct: 589 tgaagactggtaaatgcaagtttggatcgaaatgcaagttcaatcatcc 637
>dbj|AK111682.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159G03, full insert sequence Length = 1724 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Plus Query: 369 tgaagactgggacatgcaagtttggagcaacatgcaagttccatcatcc 417 |||||||||| | ||||||||||||| | | |||||||||| ||||||| Sbjct: 591 tgaagactggtaaatgcaagtttggatcgaaatgcaagttcaatcatcc 639
>gb|AF138743.1|AF138743 Arabidopsis thaliana zinc finger protein 1 (zfn1) mRNA, complete cds Length = 1440 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Plus Query: 369 tgaagactgggacatgcaagtttggagcaacatgcaagttccatcatcc 417 ||||||| || || ||||||||||||| |||||| ||||| |||||||| Sbjct: 284 tgaagacaggaacctgcaagtttggagtaacatgtaagtttcatcatcc 332 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 536 acatgtaagtttcatcatcca 556 ||||||||||||||||||||| Sbjct: 313 acatgtaagtttcatcatcca 333
>gb|AC146552.16| Medicago truncatula clone mth2-9d1, complete sequence Length = 113088 Score = 48.1 bits (24), Expect = 0.035 Identities = 33/36 (91%) Strand = Plus / Minus Query: 382 atgcaagtttggagcaacatgcaagttccatcatcc 417 |||||||||||| |||||||| || ||||||||||| Sbjct: 333 atgcaagtttggtgcaacatgtaaattccatcatcc 298
>gb|AC148289.2| Medicago truncatula chromosome 7 BAC clone mth2-36p20, complete sequence Length = 114452 Score = 48.1 bits (24), Expect = 0.035 Identities = 60/72 (83%) Strand = Plus / Minus Query: 491 gaatgtgtttattatttaagaacagggcagtgtaagtttgcaagcacatgtaagtttcat 550 ||||||| ||||||||||||||| || || || || |||| | ||| ||||| |||||| Sbjct: 57614 gaatgtgcttattatttaagaactggtcaatgcaaatttgggaacacttgtaaatttcat 57555 Query: 551 catccacaacca 562 ||||| |||||| Sbjct: 57554 catcctcaacca 57543
>emb|BX831370.1|CNS09ZFA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS83ZD07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1470 Score = 48.1 bits (24), Expect = 0.035 Identities = 147/188 (78%) Strand = Plus / Plus Query: 230 tatatgaggactggattttgtaggtttggggtaacctgcaaattcaatcaccctgcagac 289 ||||| ||||||||| ||||||||||||| ||| ||| ||||||||| ||| ||| Sbjct: 400 tatataaggactggactttgtaggtttggttcaacttgccgattcaatcatcctcacgac 459 Query: 290 aggaagctggctgttgctgctgcaaggatgaaaggcgagtatccttacagagttggtcaa 349 |||| |||| | | || |||| ||||| ||||| || || ||| | ||| ||||||| Sbjct: 460 cggaaactggttatagcaactgcgaggattaaaggagaataccctgaaagaattggtcag 519 Query: 350 cctgagtgtcaatattacctgaagactgggacatgcaagtttggagcaacatgcaagttc 409 ||||| ||| | | ||| |||||||| ||||| ||||| || |||| || |||||||| Sbjct: 520 cctgaatgtgagttttatctgaagacagggacctgcaaattcggagtgacttgcaagttt 579 Query: 410 catcatcc 417 |||||||| Sbjct: 580 catcatcc 587
>emb|BX831193.1|CNS09ZH5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS67ZB08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1334 Score = 46.1 bits (23), Expect = 0.14 Identities = 146/187 (78%) Strand = Plus / Plus Query: 230 tatatgaggactggattttgtaggtttggggtaacctgcaaattcaatcaccctgcagac 289 ||||| ||||||||| ||||||||||||| ||| ||| ||||||||| ||| ||| Sbjct: 279 tatataaggactggactttgtaggtttggttcaacttgccgattcaatcatcctcacgac 338 Query: 290 aggaagctggctgttgctgctgcaaggatgaaaggcgagtatccttacagagttggtcaa 349 |||| |||| | | || |||||||||| ||||| || || | | | ||| ||||||| Sbjct: 339 cggaaactggttatagcaactgcaaggattaaaggagaataccgtgagagaattggtcag 398 Query: 350 cctgagtgtcaatattacctgaagactgggacatgcaagtttggagcaacatgcaagttc 409 ||||| ||| | | ||| |||||||| ||||| ||||| || |||| || |||||||| Sbjct: 399 cctgaatgtgagttttatctgaagacagggacctgcaaattcggagtgacttgcaagttt 458 Query: 410 catcatc 416 ||||||| Sbjct: 459 catcatc 465
>gb|AF160977.1|AF160977 Pisum sativum zinc finger protein mRNA, complete cds Length = 1931 Score = 44.1 bits (22), Expect = 0.55 Identities = 37/42 (88%) Strand = Plus / Plus Query: 288 acaggaagctggctgttgctgctgcaaggatgaaaggcgagt 329 ||||||| |||||| |||| ||||| ||||||||||||||| Sbjct: 472 acaggaaactggctattgccactgcacggatgaaaggcgagt 513
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 53 gcgggagcggcagcgggcggtg 74 |||||||||||||||||||||| Sbjct: 1612535 gcgggagcggcagcgggcggtg 1612556
>emb|AL713888.10| Human DNA sequence from clone RP11-524O24 on chromosome 10 Contains the SLC25A16 gene for member 16 solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), a ribosomal protein L26 (RPL26) pseudogene, a novel pseudogene, the 5' end of the gene for leukemia-associated protein with a CXXC domain (LCX) and two CpG islands, complete sequence Length = 141221 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 492 aatgtgtttattatttaagaa 512 ||||||||||||||||||||| Sbjct: 7951 aatgtgtttattatttaagaa 7931
>gb|AF537363.1| Hordeum vulgare subsp. vulgare ADP-glucose pyrophosphorylase small subunit mRNA, complete cds; chloroplast gene for chloroplast product Length = 1800 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 59 gcggcagcgggcggtggcggggagg 83 ||||| ||||||||||||||||||| Sbjct: 170 gcggctgcgggcggtggcggggagg 194
>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0478H03 Length = 167560 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 52 ggcgggagcggcagcgggcgg 72 ||||||||||||||||||||| Sbjct: 163783 ggcgggagcggcagcgggcgg 163803
>dbj|AP003455.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0519D04 Length = 193068 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 52 ggcgggagcggcagcgggcgg 72 ||||||||||||||||||||| Sbjct: 44376 ggcgggagcggcagcgggcgg 44396
>dbj|AB005242.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQK4 Length = 82001 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 230 tatatgaggactggattttgtaggtttgg 258 ||||| ||||||||| ||||||||||||| Sbjct: 70397 tatataaggactggactttgtaggtttgg 70425
>gb|AY105977.1| Zea mays PCO089407 mRNA sequence Length = 769 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 atgcaagttccatcatcccag 420 ||||||||||||||||||||| Sbjct: 91 atgcaagttccatcatcccag 111
>emb|CT009557.4| Pan troglodytes chromosome X clone PTB-010G23 map Xq28, complete sequence Length = 244504 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 50 gcggcgggagcggcagcgggcggtg 74 ||||||||||||| ||||||||||| Sbjct: 197645 gcggcgggagcgggagcgggcggtg 197669
>emb|AL954671.8| Zebrafish DNA sequence from clone DKEY-180B4 in linkage group 1, complete sequence Length = 142357 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 atgcaagtttggagcaacatg 402 ||||||||||||||||||||| Sbjct: 72983 atgcaagtttggagcaacatg 72963
>gb|AC170805.2| Mus musculus BAC clone RP24-363B14 from chromosome 16, complete sequence Length = 149317 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 gaatgagaaggaatgtgttt 500 |||||||||||||||||||| Sbjct: 64070 gaatgagaaggaatgtgttt 64089
>ref|NM_187934.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1083 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 362 tattacctgaagactgggacatgcaagtttgg 393 |||||| ||||||||||||| ||||| ||||| Sbjct: 277 tattacatgaagactgggacttgcaaatttgg 308
>ref|XM_477592.1| Oryza sativa (japonica cultivar-group), mRNA Length = 270 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 gcggcagcgggcggtggcgg 78 |||||||||||||||||||| Sbjct: 86 gcggcagcgggcggtggcgg 105
>gb|AC008231.4| Drosophila melanogaster clone BACR12O13, complete sequence Length = 177339 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 atgtgtttattatttaagaa 512 |||||||||||||||||||| Sbjct: 99393 atgtgtttattatttaagaa 99412
>ref|NM_021224.3| Homo sapiens zinc finger protein 462 (ZNF462), mRNA Length = 8310 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 tggctgttgctgctgcaagg 316 |||||||||||||||||||| Sbjct: 1915 tggctgttgctgctgcaagg 1896
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ggagcggcagcgggcggtgg 75 |||||||||||||||||||| Sbjct: 5094922 ggagcggcagcgggcggtgg 5094941
>gb|BC019429.1| Mus musculus cDNA clone MGC:30371 IMAGE:5149920, complete cds Length = 1878 Score = 40.1 bits (20), Expect = 8.6 Identities = 41/48 (85%) Strand = Plus / Plus Query: 370 gaagactgggacatgcaagtttggagcaacatgcaagttccatcatcc 417 ||||||||| | ||| || ||||| ||| ||||||| ||||||||||| Sbjct: 836 gaagactggaaaatgtaaatttggcgcagcatgcaaattccatcatcc 883
>emb|AJ251914.1|SSC251914 Sus scrofa MHC class I SLA genes, haplotype H01, clone BAC 493A6 Length = 158063 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 gcagcgggcggtggcgggga 81 |||||||||||||||||||| Sbjct: 108699 gcagcgggcggtggcgggga 108680
>ref|XM_800752.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053509433.10) partial mRNA Length = 525 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 gggagcggcagcgggcggtg 74 |||||||||||||||||||| Sbjct: 209 gggagcggcagcgggcggtg 228
>ref|XM_801374.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053508015.40) partial mRNA Length = 1008 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 gggagcggcagcgggcggtg 74 |||||||||||||||||||| Sbjct: 692 gggagcggcagcgggcggtg 711
>gb|AC004682.1|HUAC004682 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-259H10, complete sequence Length = 189134 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 tggtcaacctgagtgtcaatatta 366 ||||||||||||| |||||||||| Sbjct: 37003 tggtcaacctgagggtcaatatta 37026
>gb|AC160757.3| Mus musculus chromosome 3, clone RP23-200C3, complete sequence Length = 228862 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 gaggactggattttgtaggt 254 |||||||||||||||||||| Sbjct: 132325 gaggactggattttgtaggt 132344
>emb|AL512593.9| Human DNA sequence from clone RP11-508N12 on chromosome 9 Contains two novel genes, the gene for a novel zinc finger protein (FLJ14960, KIAA1803), a ribosomal protein L7a (RPL7A) pseudogene and the 3' end of a novel gene, complete sequence Length = 148816 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 tggctgttgctgctgcaagg 316 |||||||||||||||||||| Sbjct: 47412 tggctgttgctgctgcaagg 47393
>emb|AL512407.9| Human DNA sequence from clone RP11-282C5 on chromosome 6 Contains a putative novel gene, complete sequence Length = 88376 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 agaaggaatgtgtttattat 505 |||||||||||||||||||| Sbjct: 2011 agaaggaatgtgtttattat 2030
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gccgactggcctgacgatcg 113 |||||||||||||||||||| Sbjct: 4227153 gccgactggcctgacgatcg 4227134 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gccgactggcctgacgatcg 113 |||||||||||||||||||| Sbjct: 2673257 gccgactggcctgacgatcg 2673238
>emb|CR936947.2| Medicago truncatula chromosome 5 clone mte1-85h10, COMPLETE SEQUENCE Length = 136310 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 537 catgtaagtttcatcatccacaac 560 |||| ||||||||||||||||||| Sbjct: 1197 catgcaagtttcatcatccacaac 1220
>emb|AJ301655.1|AGA301655 Anopheles gambiae partial egfr gene for putative epidermal growth factor receptor, exons 2-6 Length = 5217 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 gatggctgcggcgggagcggcagc 66 |||||||||||||| ||||||||| Sbjct: 3948 gatggctgcggcggcagcggcagc 3971
>emb|AL732622.4| Mouse DNA sequence from clone RP23-277G3 on chromosome 11 Contains part of the Ebf1 gene for early B-cell factor 1, complete sequence Length = 126781 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 aagaacagggcagtgtaagt 527 |||||||||||||||||||| Sbjct: 51013 aagaacagggcagtgtaagt 51032
>emb|CR931731.1| Medicago truncatula chromosome 5 clone mth2-83l19, COMPLETE SEQUENCE Length = 120299 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 537 catgtaagtttcatcatccacaac 560 |||| ||||||||||||||||||| Sbjct: 20539 catgcaagtttcatcatccacaac 20516
>emb|BX648965.1|HSM809116 Homo sapiens mRNA; cDNA DKFZp686L2367 (from clone DKFZp686L2367) Length = 8310 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 tggctgttgctgctgcaagg 316 |||||||||||||||||||| Sbjct: 1915 tggctgttgctgctgcaagg 1896
>emb|CR749850.1| Homo sapiens mRNA; cDNA DKFZp686B2325 (from clone DKFZp686B2325) Length = 7801 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 tggctgttgctgctgcaagg 316 |||||||||||||||||||| Sbjct: 1317 tggctgttgctgctgcaagg 1298
>dbj|AK127803.1| Homo sapiens cDNA FLJ45904 fis, clone OCBBF3026361 Length = 3475 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 tggctgttgctgctgcaagg 316 |||||||||||||||||||| Sbjct: 1911 tggctgttgctgctgcaagg 1892
>gb|AC182431.3| Pan troglodytes BAC clone CH251-185D5 from chromosome 19, complete sequence Length = 159441 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 592 tatttgctcacctggacagt 611 |||||||||||||||||||| Sbjct: 1843 tatttgctcacctggacagt 1824
>gb|AC092377.3| Homo sapiens chromosome 16 clone RP11-680G10, complete sequence Length = 207283 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 gggcggtggcggggaggggt 86 |||||||||||||||||||| Sbjct: 96321 gggcggtggcggggaggggt 96340
>gb|AC090482.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0015I18, from chromosome 10, complete sequence Length = 161479 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 cagcgggcggtggcggggag 82 |||||||||||||||||||| Sbjct: 77939 cagcgggcggtggcggggag 77958
>gb|AC116426.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0058P18, from chromosome 3, complete sequence Length = 155037 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 ggagcggcagcgggcggtgg 75 |||||||||||||||||||| Sbjct: 74783 ggagcggcagcgggcggtgg 74764
>gb|AC115687.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0091J11, from chromosome 3, complete sequence Length = 181163 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 ggagcggcagcgggcggtgg 75 |||||||||||||||||||| Sbjct: 161596 ggagcggcagcgggcggtgg 161577
>gb|AC009075.7| Homo sapiens chromosome 16 clone RP11-328J14, complete sequence Length = 189983 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 tggtcaacctgagtgtcaatatta 366 ||||||||||||| |||||||||| Sbjct: 17496 tggtcaacctgagggtcaatatta 17473
>gb|AC008413.7| Homo sapiens chromosome 5 clone CTC-281M20, complete sequence Length = 143200 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 cggtggcggggaggggtcct 89 |||||||||||||||||||| Sbjct: 55714 cggtggcggggaggggtcct 55695
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gccgactggcctgacgatcg 113 |||||||||||||||||||| Sbjct: 5033413 gccgactggcctgacgatcg 5033394 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gccgactggcctgacgatcg 113 |||||||||||||||||||| Sbjct: 4602910 gccgactggcctgacgatcg 4602891
>gb|AC158630.5| Mus musculus 10 BAC RP23-440F7 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 191380 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 atcatcccagagagaaggct 430 |||||||||||||||||||| Sbjct: 97961 atcatcccagagagaaggct 97942
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 cagcgggcggtggcggggag 82 |||||||||||||||||||| Sbjct: 9288478 cagcgggcggtggcggggag 9288459
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 gcggcagcgggcggtggcgg 78 |||||||||||||||||||| Sbjct: 11711255 gcggcagcgggcggtggcgg 11711236
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ggagcggcagcgggcggtgg 75 |||||||||||||||||||| Sbjct: 21533528 ggagcggcagcgggcggtgg 21533547
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ggagcggcagcgggcggtgg 75 |||||||||||||||||||| Sbjct: 5094139 ggagcggcagcgggcggtgg 5094158
>gb|AC027316.3|AC027316 Homo sapiens chromosome 5 clone CTC-304C4, complete sequence Length = 112361 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 cggtggcggggaggggtcct 89 |||||||||||||||||||| Sbjct: 98534 cggtggcggggaggggtcct 98515
>gb|AC161790.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0011F12, complete sequence Length = 122262 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 cagcgggcggtggcggggag 82 |||||||||||||||||||| Sbjct: 6321 cagcgggcggtggcggggag 6302
>gb|AC008554.8| Homo sapiens chromosome 19 clone CTC-513N18, complete sequence Length = 166873 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 592 tatttgctcacctggacagt 611 |||||||||||||||||||| Sbjct: 143095 tatttgctcacctggacagt 143076
>gb|AC006038.3| Homo sapiens BAC clone RP11-299C5 from 2, complete sequence Length = 184950 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ggctgttgctgctgcaagga 317 |||||||||||||||||||| Sbjct: 131776 ggctgttgctgctgcaagga 131795
>gb|AC009480.4| Homo sapiens BAC clone RP11-295N18 from 2, complete sequence Length = 188353 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 aagtttggagcaacatgcaa 405 |||||||||||||||||||| Sbjct: 116032 aagtttggagcaacatgcaa 116051
>dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0462H08 Length = 139152 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 362 tattacctgaagactgggacatgcaagtttgg 393 |||||| ||||||||||||| ||||| ||||| Sbjct: 94092 tattacatgaagactgggacttgcaaatttgg 94061
>gb|AC010636.6|AC010636 Homo sapiens chromosome 19 clone CTD-2332E11, complete sequence Length = 179393 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 592 tatttgctcacctggacagt 611 |||||||||||||||||||| Sbjct: 129466 tatttgctcacctggacagt 129485
>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0567G03 Length = 196834 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 ggagcggcagcgggcggtgg 75 |||||||||||||||||||| Sbjct: 90712 ggagcggcagcgggcggtgg 90731
>dbj|AP006344.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0680C01 Length = 145580 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 gcggcagcgggcggtggcgg 78 |||||||||||||||||||| Sbjct: 69414 gcggcagcgggcggtggcgg 69395
>dbj|AK112047.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-F12, full insert sequence Length = 1043 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 atgcaagttccatcatccca 419 |||||||||||||||||||| Sbjct: 144 atgcaagttccatcatccca 163
>dbj|AK111903.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093O12, full insert sequence Length = 2180 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 362 tattacctgaagactgggacatgcaagtttgg 393 |||||| ||||||||||||| ||||| ||||| Sbjct: 510 tattacatgaagactgggacttgcaaatttgg 541
>dbj|AK111727.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039E23, full insert sequence Length = 2106 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 362 tattacctgaagactgggacatgcaagtttgg 393 |||||| ||||||||||||| ||||| ||||| Sbjct: 491 tattacatgaagactgggacttgcaaatttgg 522
>dbj|AK111633.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116H24, full insert sequence Length = 2259 Score = 40.1 bits (20), Expect = 8.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 362 tattacctgaagactgggacatgcaagtttgg 393 |||||| ||||||||||||| ||||| ||||| Sbjct: 642 tattacatgaagactgggacttgcaaatttgg 673
>ref|XM_314948.2| Anopheles gambiae str. PEST ENSANGP00000024883 (ENSANGG00000016316), partial mRNA Length = 4128 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 gatggctgcggcgggagcggcagc 66 |||||||||||||| ||||||||| Sbjct: 3393 gatggctgcggcggcagcggcagc 3416
>ref|XM_314949.2| Anopheles gambiae str. PEST ENSANGP00000018805 (ENSANGG00000016316), partial mRNA Length = 3966 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 gatggctgcggcgggagcggcagc 66 |||||||||||||| ||||||||| Sbjct: 3396 gatggctgcggcggcagcggcagc 3419
>emb|AL928997.8| Zebrafish DNA sequence from clone CH211-125O15 in linkage group 18, complete sequence Length = 169038 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 555 cacaaccatctagcacaatg 574 |||||||||||||||||||| Sbjct: 161031 cacaaccatctagcacaatg 161012
>gb|AE003453.3| Drosophila melanogaster chromosome 2R, section 61 of 73 of the complete sequence Length = 305143 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 atgtgtttattatttaagaa 512 |||||||||||||||||||| Sbjct: 106216 atgtgtttattatttaagaa 106197
>gb|AC129557.10| Mus musculus chromosome 19, clone RP24-245F23, complete sequence Length = 174415 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 483 atgagaaggaatgtgtttat 502 |||||||||||||||||||| Sbjct: 36431 atgagaaggaatgtgtttat 36412
>gb|AC102657.13| Mus musculus chromosome 10, clone RP23-15N10, complete sequence Length = 186954 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 atcatcccagagagaaggct 430 |||||||||||||||||||| Sbjct: 168974 atcatcccagagagaaggct 168993
>gb|AC171178.2| Gallus gallus BAC clone CH261-77I20 from chromosome ul, complete sequence Length = 237797 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 52 ggcgggagcggcagcgggcggtgg 75 ||||||||||||||||||| |||| Sbjct: 1012 ggcgggagcggcagcgggctgtgg 989
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 cagcgggcggtggcggggag 82 |||||||||||||||||||| Sbjct: 9293617 cagcgggcggtggcggggag 9293598
>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 115859 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 gggagcggcagcgggcggtg 74 |||||||||||||||||||| Sbjct: 80388 gggagcggcagcgggcggtg 80407
>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome Length = 2905187 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 489 aggaatgtgtttattattta 508 |||||||||||||||||||| Sbjct: 1128292 aggaatgtgtttattattta 1128311
>emb|AL445429.10| Human DNA sequence from clone RP11-234E2 on chromosome 6, complete sequence Length = 71983 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 agaaggaatgtgtttattat 505 |||||||||||||||||||| Sbjct: 69973 agaaggaatgtgtttattat 69954
>gb|AY863213.1| Smittium culisetae mitochondrion, complete genome Length = 58654 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 atgtgtttattatttaagaa 512 |||||||||||||||||||| Sbjct: 9535 atgtgtttattatttaagaa 9516 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,848,931 Number of Sequences: 3902068 Number of extensions: 5848931 Number of successful extensions: 147979 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 112 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 146711 Number of HSP's gapped (non-prelim): 1263 length of query: 630 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 607 effective length of database: 17,143,297,704 effective search space: 10405981706328 effective search space used: 10405981706328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
