ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah63j03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPL11_ORYSA (Q64HA9) Spotted leaf protein 11 (Spotted leaf11) (C... 79 1e-14
2PUB14_ARATH (Q8VZ40) E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Pro... 52 1e-06
3AP3D_SCHPO (Q9UTL8) AP-3 complex subunit delta (Adapter-related ... 37 0.034
4CTNB_URECA (P35224) Beta-catenin 35 0.17
5Y1553_XYLFT (Q87BA5) PKHD-type hydroxylase PD1553 (EC 1.14.11.-) 33 0.64
6Y598_XYLFA (Q9PFQ9) PKHD-type hydroxylase Xf0598 (EC 1.14.11.-) 33 0.84
7PKP2_HUMAN (Q99959) Plakophilin-2 32 1.9
8AP2A1_MOUSE (P17426) AP-2 complex subunit alpha-1 (Adapter-relat... 32 1.9
9AP2A1_HUMAN (O95782) AP-2 complex subunit alpha-1 (Adapter-relat... 32 1.9
10AP2A2_HUMAN (O94973) AP-2 complex subunit alpha-2 (Adapter-relat... 31 3.2
11AP2A2_MOUSE (P17427) AP-2 complex subunit alpha-2 (Adapter-relat... 31 3.2
12LIFO_PSES5 (P25276) Lipase chaperone (Lipase foldase) (Lipase he... 31 3.2
13TILS_FUSNN (Q8RHN5) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR... 31 3.2
14DXR_MYCPE (Q8EWQ6) 1-deoxy-D-xylulose 5-phosphate reductoisomera... 31 3.2
15BCR_HUMAN (P11274) Breakpoint cluster region protein (EC 2.7.11.... 31 3.2
16AP2A2_RAT (P18484) AP-2 complex subunit alpha-2 (Adapter-related... 31 3.2
17LIFO1_BURCE (P22089) Lipase chaperone (Lipase foldase) (Lipase h... 30 4.2
18CTND1_HUMAN (O60716) Catenin delta-1 (p120 catenin) (p120(ctn)) ... 30 4.2
19DNAJ_GLUOX (Q5FSL4) Chaperone protein dnaJ 30 4.2
20MIAA_NEIMB (Q9JZR0) tRNA delta(2)-isopentenylpyrophosphate trans... 30 7.1
21MASS1_MOUSE (Q8VHN7) Monogenic audiogenic seizure susceptibility... 30 7.1
22Y1275_ARATH (P61430) Hypothetical protein At1g22275 29 9.3
23HTPG_SHIFL (Q83SE6) Chaperone protein htpG (Heat shock protein h... 29 9.3
24ABS_DROME (Q9V3C0) ATP-dependent RNA helicase abstrakt (EC 3.6.1... 29 9.3

>SPL11_ORYSA (Q64HA9) Spotted leaf protein 11 (Spotted leaf11) (Cell|
           death-related protein SPL11)
          Length = 694

 Score = 79.0 bits (193), Expect = 1e-14
 Identities = 56/214 (26%), Positives = 106/214 (49%), Gaps = 24/214 (11%)
 Frame = +1

Query: 34  SGATFEREAILKWFKESDSSGRSLVCPITRKELSSTELNPSIALRNTIDEWMHRN----- 198
           +G T+ER  I KW     +SG    CP T++++S++ L P+  LR+ I +W   N     
Sbjct: 294 TGQTYERACIEKWI----ASGHH-TCPTTQQKMSTSALTPNYVLRSLISQWCETNGMEPP 348

Query: 199 ----------------QAAKLDVARKSLTSENSEHDTLQALEYVVEICQRSRSSRHVVRK 330
                           + A +D     L S ++E     A E  + + +R+ ++R  + +
Sbjct: 349 KRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRL-LAKRNANNRICIAE 407

Query: 331 LGLISLISELLKNSSTKVRQKALESLCFIAKDDNDNKDEIAAGDNIRTIVKFLSHGHVQE 510
            G I L+  LL +S  + ++ A+ +L  ++  + DNK  I +   + +IV  L +G ++ 
Sbjct: 408 AGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHE-DNKASIISSGAVPSIVHVLKNGSMEA 466

Query: 511 KEQAASLLYELS---QYKPLSEKIGSVPGAILIL 603
           +E AA+ L+ LS   +YK     +G++P  +++L
Sbjct: 467 RENAAATLFSLSVIDEYKVTIGGMGAIPALVVLL 500



to top

>PUB14_ARATH (Q8VZ40) E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical U-box|
           domain protein 14)
          Length = 632

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 23/213 (10%)
 Frame = +1

Query: 34  SGATFEREAILKWFKESDSSGRSLVCPITRKELSSTELNPSIALRNTIDEWMHRN----- 198
           +G T+ER +I KW      +     CP +++ L    L P+  L++ I  W   N     
Sbjct: 269 TGQTYERSSIQKWLDAGHKT-----CPKSQETLLHAGLTPNYVLKSLIALWCESNGIELP 323

Query: 199 ---QAAKLDVARKSLTSENSEHDTLQALEYVVE---------------ICQRSRSSRHVV 324
               + +      S +S+      L  LE +                 + +R+  +R  +
Sbjct: 324 QNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCI 383

Query: 325 RKLGLISLISELLKNSSTKVRQKALESLCFIAKDDNDNKDEIAAGDNIRTIVKFLSHGHV 504
            + G I L+ ELL +   + ++ ++ +L  ++ ++  NK  I     I  IV+ L +G +
Sbjct: 384 AEAGAIPLLVELLSSPDPRTQEHSVTALLNLSINEG-NKGAIVDAGAITDIVEVLKNGSM 442

Query: 505 QEKEQAASLLYELSQYKPLSEKIGSVPGAILIL 603
           + +E AA+ L+ LS        IG+  GAI  L
Sbjct: 443 EARENAAATLFSLSVIDENKVAIGAA-GAIQAL 474



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 28/88 (31%), Positives = 47/88 (53%)
 Frame = +1

Query: 334 GLISLISELLKNSSTKVRQKALESLCFIAKDDNDNKDEIAAGDNIRTIVKFLSHGHVQEK 513
           G I+ I E+LKN S + R+ A  +L  ++  D +NK  I A   I+ ++  L  G  + K
Sbjct: 428 GAITDIVEVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIQALISLLEEGTRRGK 486

Query: 514 EQAASLLYELSQYKPLSEKIGSVPGAIL 597
           + AA+ ++ L  Y+    K  +V G I+
Sbjct: 487 KDAATAIFNLCIYQ--GNKSRAVKGGIV 512



to top

>AP3D_SCHPO (Q9UTL8) AP-3 complex subunit delta (Adapter-related protein|
           complex 3 delta subunit) (Delta-adaptin 3) (AP-3 complex
           delta subunit) (Delta-adaptin)
          Length = 834

 Score = 37.4 bits (85), Expect = 0.034
 Identities = 26/90 (28%), Positives = 44/90 (48%)
 Frame = +1

Query: 256 DTLQALEYVVEICQRSRSSRHVVRKLGLISLISELLKNSSTKVRQKALESLCFIAKDDND 435
           DT Q L+Y+  +C R  ++ H       + +I + L ++ T +R +AL           D
Sbjct: 301 DTDQNLKYIALLCLRKLANTHPSLVSAQLDIILKCLVDTDTSIRLRAL-----------D 349

Query: 436 NKDEIAAGDNIRTIVKFLSHGHVQEKEQAA 525
             +EI   +NIRTIVK L    +   +++A
Sbjct: 350 LVNEIVNKENIRTIVKTLMLQLIVSSDESA 379



to top

>CTNB_URECA (P35224) Beta-catenin|
          Length = 818

 Score = 35.0 bits (79), Expect = 0.17
 Identities = 25/96 (26%), Positives = 45/96 (46%)
 Frame = +1

Query: 283 VEICQRSRSSRHVVRKLGLISLISELLKNSSTKVRQKALESLCFIAKDDNDNKDEIAAGD 462
           + I  R   +R V+R L  ISL ++LL +    +++ A   LC +A  D +  + I    
Sbjct: 600 LHIMAREAHNRAVIRGLNCISLFAQLLYSPIDNIQRVAAGVLCELAA-DKEGAEMIEQEG 658

Query: 463 NIRTIVKFLSHGHVQEKEQAASLLYELSQYKPLSEK 570
               + + L   +      AA++L+ +S+ KP   K
Sbjct: 659 TTAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYK 694



to top

>Y1553_XYLFT (Q87BA5) PKHD-type hydroxylase PD1553 (EC 1.14.11.-)|
          Length = 230

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 18/59 (30%), Positives = 33/59 (55%)
 Frame = +1

Query: 106 VCPITRKELSSTELNPSIALRNTIDEWMHRNQAAKLDVARKSLTSENSEHDTLQALEYV 282
           V P+TR       +     +++ + +  HR+Q  +LD A +SLT+ N++H+T+  L  V
Sbjct: 165 VAPVTR----GMRIASFFWVQSLVRQATHRHQLLELDTAIQSLTASNTDHNTILRLTNV 219



to top

>Y598_XYLFA (Q9PFQ9) PKHD-type hydroxylase Xf0598 (EC 1.14.11.-)|
          Length = 230

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 17/56 (30%), Positives = 32/56 (57%)
 Frame = +1

Query: 106 VCPITRKELSSTELNPSIALRNTIDEWMHRNQAAKLDVARKSLTSENSEHDTLQAL 273
           V P+TR       +     +++ + +  HR+Q  +LD A +SLT+ N++H+T+  L
Sbjct: 165 VAPVTR----GMRIASFFWVQSLVRQATHRHQLLELDTAIQSLTASNTDHNTILRL 216



to top

>PKP2_HUMAN (Q99959) Plakophilin-2|
          Length = 881

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 19/68 (27%), Positives = 39/68 (57%)
 Frame = +1

Query: 286 EICQRSRSSRHVVRKLGLISLISELLKNSSTKVRQKALESLCFIAKDDNDNKDEIAAGDN 465
           E  Q+S + + V +  G++ L+ +LLK  +  V++    +L  +  +DNDNK E+A  + 
Sbjct: 380 ECFQKSEARKRVNQLRGILKLL-QLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNG 438

Query: 466 IRTIVKFL 489
           +  +++ L
Sbjct: 439 VPRLLQVL 446



to top

>AP2A1_MOUSE (P17426) AP-2 complex subunit alpha-1 (Adapter-related protein|
           complex 2 alpha-1 subunit) (Alpha-adaptin A) (Adaptor
           protein complex AP-2 alpha-1 subunit) (Clathrin assembly
           protein complex 2 alpha-A large chain) (100 kDa coated
           vesicle prote
          Length = 977

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
 Frame = +1

Query: 349 ISELLKNSSTKVRQKALESLCFIAKDDNDNKDEIAAGDNIRTIVKFL-SHGHVQEKEQAA 525
           + + L++  T +R  ALES+C +A  +  ++   A   +I T++  L +   V  +++AA
Sbjct: 334 LGQFLQHRETNLRYLALESMCTLASSEFSHE---AVKTHIDTVINALKTERDVSVRQRAA 390

Query: 526 SLLYEL 543
            LLY +
Sbjct: 391 DLLYAM 396



to top

>AP2A1_HUMAN (O95782) AP-2 complex subunit alpha-1 (Adapter-related protein|
           complex 2 alpha-1 subunit) (Alpha-adaptin A) (Adaptor
           protein complex AP-2 alpha-1 subunit) (Clathrin assembly
           protein complex 2 alpha-A large chain) (100 kDa coated
           vesicle prote
          Length = 977

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
 Frame = +1

Query: 349 ISELLKNSSTKVRQKALESLCFIAKDDNDNKDEIAAGDNIRTIVKFL-SHGHVQEKEQAA 525
           + + L++  T +R  ALES+C +A  +  ++   A   +I T++  L +   V  +++AA
Sbjct: 334 LGQFLQHRETNLRYLALESMCTLASSEFSHE---AVKTHIDTVINALKTERDVSVRQRAA 390

Query: 526 SLLYEL 543
            LLY +
Sbjct: 391 DLLYAM 396



to top

>AP2A2_HUMAN (O94973) AP-2 complex subunit alpha-2 (Adapter-related protein|
           complex 2 alpha-2 subunit) (Alpha-adaptin C) (Adaptor
           protein complex AP-2 alpha-2 subunit) (Clathrin assembly
           protein complex 2 alpha-C large chain) (100 kDa coated
           vesicle prote
          Length = 939

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +1

Query: 349 ISELLKNSSTKVRQKALESLCFIAKDDNDNKDEIAAGDNIRTIVKFL-SHGHVQEKEQAA 525
           + + L++  T +R  ALES+C +A  +  ++   A   +I T++  L +   V  +++A 
Sbjct: 333 LGQFLQHRETNLRYLALESMCTLASSEFSHE---AVKTHIETVINALKTERDVSVRQRAV 389

Query: 526 SLLYEL 543
            LLY +
Sbjct: 390 DLLYAM 395



to top

>AP2A2_MOUSE (P17427) AP-2 complex subunit alpha-2 (Adapter-related protein|
           complex 2 alpha-2 subunit) (Alpha-adaptin C) (Adaptor
           protein complex AP-2 alpha-2 subunit) (Clathrin assembly
           protein complex 2 alpha-C large chain) (100 kDa coated
           vesicle prote
          Length = 938

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +1

Query: 349 ISELLKNSSTKVRQKALESLCFIAKDDNDNKDEIAAGDNIRTIVKFL-SHGHVQEKEQAA 525
           + + L++  T +R  ALES+C +A  +  ++   A   +I T++  L +   V  +++A 
Sbjct: 333 LGQFLQHRETNLRYLALESMCTLASSEFSHE---AVKTHIETVINALKTERDVSVRQRAV 389

Query: 526 SLLYEL 543
            LLY +
Sbjct: 390 DLLYAM 395



to top

>LIFO_PSES5 (P25276) Lipase chaperone (Lipase foldase) (Lipase helper protein)|
           (Lipase activator protein) (Lipase modulator)
           (Transcriptional activator act)
          Length = 344

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 17/73 (23%), Positives = 39/73 (53%)
 Frame = +1

Query: 178 DEWMHRNQAAKLDVARKSLTSENSEHDTLQALEYVVEICQRSRSSRHVVRKLGLISLISE 357
           ++W  R   A+L +A+    ++  + + L ALE  +   +R+ + +H+ ++   I  I++
Sbjct: 193 EQWRQRYDLARLKIAQDPTLTDAQKAERLAALEQQMPADERA-AQQHIDQQRAAIDQIAQ 251

Query: 358 LLKNSSTKVRQKA 396
           L K+ +T    +A
Sbjct: 252 LQKSGATPDAMRA 264



to top

>TILS_FUSNN (Q8RHN5) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 448

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 24/117 (20%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
 Frame = +1

Query: 241 ENSEHDTLQALEYVVEICQRSRSSRHVVRKLGLIS------LISELLKNSSTKVRQKALE 402
           EN+++++L    Y          +R ++ K+  +S      L+S  L   + +V +  ++
Sbjct: 229 ENNQNNSLNLSNYT------DSENRIILEKIKFLSDFDKKNLLSLFLNQKNIEVNRNKID 282

Query: 403 SLCFIAKDDNDNKDEIAAGDNIRTIVKFLSHGHVQEKEQAASLLYELSQYKPLSEKI 573
            +  + K +   K ++   D    IVK  +H +++EK++  +++  + + K  SE+I
Sbjct: 283 EINSLIKSNGTKKIDL---DKSYRIVKDYTHLYIEEKKENFTIVNRVVKLKIPSEQI 336



to top

>DXR_MYCPE (Q8EWQ6) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC|
           1.1.1.267) (DXP reductoisomerase)
           (1-deoxyxylulose-5-phosphate reductoisomerase)
           (2-C-methyl-D-erythritol 4-phosphate synthase)
          Length = 377

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 28/123 (22%), Positives = 55/123 (44%)
 Frame = +1

Query: 148 NPSIALRNTIDEWMHRNQAAKLDVARKSLTSENSEHDTLQALEYVVEICQRSRSSRHVVR 327
           +PS+  +NT++ +    +    D+   +L   +  H TL AL+  V++   ++ S  V  
Sbjct: 64  SPSVKTKNTVNSFEELLEKTNPDIILNALVGFSGLHITLLALKNNVDLALANKESLVVAG 123

Query: 328 KLGLISLISELLKNSSTKVRQKALESLCFIAKDDNDNKDEIAAGDNIRTIVKFLSHGHVQ 507
                 LI +L ++SS+++     E         N+NK+       I+ ++   S G   
Sbjct: 124 -----WLIEDLKRSSSSRIYPVDSEHSSLYDSLKNNNKE-------IKELIITCSGGPFY 171

Query: 508 EKE 516
           +KE
Sbjct: 172 KKE 174



to top

>BCR_HUMAN (P11274) Breakpoint cluster region protein (EC 2.7.11.1) (NY-REN-26|
           antigen)
          Length = 1271

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 19/56 (33%), Positives = 31/56 (55%)
 Frame = +1

Query: 223 RKSLTSENSEHDTLQALEYVVEICQRSRSSRHVVRKLGLISLISELLKNSSTKVRQ 390
           R+S+T +  EH  L    ++VE+ + +R  RHV     L+ L ++L K S  K +Q
Sbjct: 696 RQSMTVKKGEHRQLLKDSFMVELVEGARKLRHVFLFTELL-LCTKLKKQSGGKTQQ 750



to top

>AP2A2_RAT (P18484) AP-2 complex subunit alpha-2 (Adapter-related protein|
           complex 2 alpha-2 subunit) (Alpha-adaptin C) (Adaptor
           protein complex AP-2 alpha-2 subunit) (Clathrin assembly
           protein complex 2 alpha-C large chain) (100 kDa coated
           vesicle protein
          Length = 937

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = +1

Query: 349 ISELLKNSSTKVRQKALESLCFIAKDDNDNKDEIAAGDNIRTIVKFL-SHGHVQEKEQAA 525
           + + L++  T +R  ALES+C +A  +  ++   A   +I T++  L +   V  +++A 
Sbjct: 332 LGQFLQHRETNLRYLALESMCTLASSEFSHE---AVKTHIETVINALKTERDVSVRQRAV 388

Query: 526 SLLYEL 543
            LLY +
Sbjct: 389 DLLYAM 394



to top

>LIFO1_BURCE (P22089) Lipase chaperone (Lipase foldase) (Lipase helper protein)|
           (Lipase activator protein) (Lipase modulator)
          Length = 344

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 19/73 (26%), Positives = 37/73 (50%)
 Frame = +1

Query: 178 DEWMHRNQAAKLDVARKSLTSENSEHDTLQALEYVVEICQRSRSSRHVVRKLGLISLISE 357
           ++W  R   A+L +A+    ++  + + L ALE  +   +R+   R V R+   I  I++
Sbjct: 193 EQWRQRYDLARLKIAQDPALTDAQKAERLAALEQQMPADERAAQQR-VDRQRAAIDQIAQ 251

Query: 358 LLKNSSTKVRQKA 396
           L K+ +T    +A
Sbjct: 252 LQKSGATPDAMRA 264



to top

>CTND1_HUMAN (O60716) Catenin delta-1 (p120 catenin) (p120(ctn))|
           (Cadherin-associated Src substrate) (CAS) (p120(cas))
          Length = 968

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
 Frame = +1

Query: 268 ALEYVVEICQRSRSSRHVVRKLGLISLISELLKNSSTKVRQKALESLCFIA-KDDNDNKD 444
           A  Y+  +C R+   +  VRKL  I ++  LL +   +V   A  +L  I+   D DNK 
Sbjct: 386 AAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 445

Query: 445 EIAAGDNIRTIVKFLSHGHVQE-KEQAASLLYELSQYKPLSEKI 573
            I   D +  +V+ L      +  E     L+ LS +  +  +I
Sbjct: 446 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEI 489



to top

>DNAJ_GLUOX (Q5FSL4) Chaperone protein dnaJ|
          Length = 380

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
 Frame = -2

Query: 547 VKVHITEMQPVLSLGRGHEIRTSLLCECC-------PRQQSHPCYHCH 425
           V+V IT M+    + +  E+RT + CE C       P+  S  C  CH
Sbjct: 124 VQVEITLMEAFTGVTKDVEVRTRVTCEACHGSGSADPKAGSSTCPTCH 171



to top

>MIAA_NEIMB (Q9JZR0) tRNA delta(2)-isopentenylpyrophosphate transferase (EC|
           2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPTase) (IPPT)
          Length = 313

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 195 PMHPFINSVSQSNTWIQLSAAELLPSNRADKAPSTAIRFLEPLQNGF 55
           PM   + S++       L  A L+P NRA    + A+RF   L+ GF
Sbjct: 175 PMSTHLGSLTSHTLPFDLHTAALIPENRARLHENIALRFHLMLEQGF 221



to top

>MASS1_MOUSE (Q8VHN7) Monogenic audiogenic seizure susceptibility protein 1|
            precursor (Very large G-protein coupled receptor 1)
            (Neurepin)
          Length = 6298

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = -1

Query: 182  SSIVFLRAILGFNSVLLSSFLVIGQTRLLPLLSDSLNHFKMASRSNVAPL 33
            +S+  L A  GF  VL+ + ++ G  ++    SDS ++F +ASR N + L
Sbjct: 3334 NSVYMLTA--GFRLVLIQTIIISGSCQVRHFTSDSQDYFIIASRRNDSEL 3381



to top

>Y1275_ARATH (P61430) Hypothetical protein At1g22275|
          Length = 856

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
 Frame = +1

Query: 121 RKELSSTELNPSIALRNTIDEWMHRNQAAKLDVARKSLTSENSEHDT-LQALEYVVEICQ 297
           R+E  S ELN    L+   D+ + +NQ    +  ++ +T+  SEHD  L+A +     CQ
Sbjct: 626 REEHESKELN----LKAKYDQELRQNQIQAENELKERITALKSEHDAQLKAFK-----CQ 676

Query: 298 RSRSSRHVVRKLGLISLISELLKNSSTKVRQKALESLCFIAKDDNDNKDEIAAGDNIRTI 477
                + +  +L L             + RQ+AL  L +    DN  +++    +     
Sbjct: 677 YEDDCKKLQEELDL---------QRKKEERQRALVQLQWKVMSDNPPEEQEVNSN----- 722

Query: 478 VKFLSHGHVQEKE 516
            K  SH  V+ KE
Sbjct: 723 -KDYSHSSVKVKE 734



to top

>HTPG_SHIFL (Q83SE6) Chaperone protein htpG (Heat shock protein htpG) (High|
           temperature protein G)
          Length = 624

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 46/160 (28%), Positives = 63/160 (39%), Gaps = 1/160 (0%)
 Frame = +1

Query: 73  FKESDSSGRSLVCPITRKELSSTELNPSIALRNTIDEWMHRNQAAKLDVARKSLTSENSE 252
           F ES   G   V  IT KE   TE+  ++ LR   DE++        D   +S+ S+ S+
Sbjct: 153 FWESAGEGEYTVADIT-KEDRGTEI--TLHLREGEDEFLD-------DWRVRSIISKYSD 202

Query: 253 HDTLQALEYVVEICQRSRSSRHVVRKLGLISLISEL-LKNSSTKVRQKALESLCFIAKDD 429
           H  L      VEI +R       V     I+    L  +N S    ++  E    IA D 
Sbjct: 203 HIALP-----VEIEKREEKDGETVISWAKINKAQALWTRNKSEITDEEYKEFYKHIAHDF 257

Query: 430 NDNKDEIAAGDNIRTIVKFLSHGHVQEKEQAASLLYELSQ 549
           ND                  SH  V+ K++  SLLY  SQ
Sbjct: 258 NDPLT--------------WSHNRVEGKQEYTSLLYIPSQ 283



to top

>ABS_DROME (Q9V3C0) ATP-dependent RNA helicase abstrakt (EC 3.6.1.-) (DEAD box|
           protein abstrakt)
          Length = 619

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 18/86 (20%), Positives = 39/86 (45%)
 Frame = +1

Query: 217 VARKSLTSENSEHDTLQALEYVVEICQRSRSSRHVVRKLGLISLISELLKNSSTKVRQKA 396
           V R   +S++SE   L   +YV  +  + R  +H+++   ++ L+SE  +  S+      
Sbjct: 4   VKRYRRSSKSSEEGDLDNEDYVPYVPVKERKKQHMIKLGRIVQLVSETAQPKSS------ 57

Query: 397 LESLCFIAKDDNDNKDEIAAGDNIRT 474
                     +N+N+D+     ++ T
Sbjct: 58  ---------SENENEDDSQGAHDVET 74


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.132    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,302,454
Number of Sequences: 219361
Number of extensions: 1370397
Number of successful extensions: 4126
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 4031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4124
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top